Wall clock time and date at job start Tue Mar 31 2020 17:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.45211 * 2 1 4 4 C 1.53042 * 109.45996 * 119.96208 * 2 1 3 5 5 C 1.53189 * 109.31559 * 181.38817 * 4 2 1 6 6 N 1.46932 * 108.77328 * 305.36333 * 5 4 2 7 7 C 1.36933 * 120.63277 * 233.58554 * 6 5 4 8 8 H 1.07995 * 120.00560 * 152.67137 * 7 6 5 9 9 C 1.38819 * 119.99704 * 332.94837 * 7 6 5 10 10 N 1.31621 * 119.99889 * 159.01605 * 9 7 6 11 11 Si 1.86793 * 120.00166 * 339.01590 * 9 7 6 12 12 H 1.48498 * 109.47408 * 93.11402 * 11 9 7 13 13 H 1.48498 * 109.47421 * 213.11670 * 11 9 7 14 14 H 1.48510 * 109.47320 * 333.11387 * 11 9 7 15 15 C 1.46926 * 118.73546 * 53.86349 * 6 5 4 16 16 C 1.53038 * 109.46235 * 240.03122 * 2 1 3 17 17 H 1.09001 * 109.49925 * 298.59533 * 16 2 1 18 18 N 1.46496 * 109.50030 * 58.66489 * 16 2 1 19 19 C 1.34776 * 119.99989 * 205.00517 * 18 16 2 20 20 O 1.21686 * 120.00120 * 359.97438 * 19 18 16 21 21 C 1.46677 * 119.99611 * 179.97438 * 19 18 16 22 22 C 1.38159 * 126.18934 * 179.68946 * 21 19 18 23 23 C 1.38939 * 106.95132 * 179.84415 * 22 21 19 24 24 C 1.36271 * 108.02187 * 0.46364 * 23 22 21 25 25 N 1.34747 * 108.83821 * 359.66144 * 24 23 22 26 26 H 0.97000 * 125.71535 * 180.02562 * 25 24 23 27 27 C 1.51086 * 122.58499 * 179.56987 * 24 23 22 28 28 C 1.53542 * 107.71738 * 344.13214 * 27 24 23 29 29 O 1.42995 * 109.68874 * 48.02169 * 28 27 24 30 30 C 1.43423 * 114.33204 * 288.96661 * 29 28 27 31 31 H 1.08996 * 109.47385 * 300.03937 * 1 2 3 32 32 H 1.08999 * 109.46801 * 60.03797 * 1 2 3 33 33 H 1.08997 * 109.47249 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.49677 * 61.43440 * 4 2 1 35 35 H 1.09004 * 109.49884 * 301.33639 * 4 2 1 36 36 H 1.09005 * 109.59140 * 185.58219 * 5 4 2 37 37 H 1.08997 * 109.58961 * 65.15270 * 5 4 2 38 38 H 0.96996 * 120.00187 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.58782 * 65.92640 * 15 6 5 40 40 H 1.09007 * 109.58094 * 186.35251 * 15 6 5 41 41 H 0.97001 * 119.99614 * 24.99773 * 18 16 2 42 42 H 1.08004 * 126.52625 * 359.97438 * 22 21 19 43 43 H 1.09010 * 109.81365 * 103.69358 * 27 24 23 44 44 H 1.08997 * 109.81591 * 224.58184 * 27 24 23 45 45 H 1.09004 * 109.43758 * 287.95216 * 28 27 24 46 46 H 1.09003 * 109.40374 * 168.06757 * 28 27 24 47 47 H 1.09004 * 109.76305 * 291.10842 * 30 29 28 48 48 H 1.09001 * 109.80282 * 170.36949 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6885 1.2644 6 7 4.0679 -1.2489 0.0002 7 6 4.9764 -2.2734 0.0002 8 1 5.0134 -2.9625 -0.8305 9 6 5.8461 -2.4296 1.0708 10 7 6.4169 -3.5952 1.2903 11 14 6.2064 -0.9859 2.2000 12 1 5.2764 -1.0183 3.3572 13 1 7.6062 -1.0759 2.6873 14 1 6.0231 0.2845 1.4530 15 6 3.5757 -0.6848 -1.2641 16 6 2.0399 -0.7208 -1.2500 17 1 1.6974 -1.7555 -1.2385 18 7 1.5257 -0.0488 -2.4459 19 6 1.3972 -0.7325 -3.6003 20 8 1.7087 -1.9078 -3.6493 21 6 0.8819 -0.0597 -4.7975 22 6 0.7043 -0.6323 -6.0422 23 6 0.1953 0.3571 -6.8744 24 6 0.0800 1.5027 -6.1456 25 7 0.4924 1.2604 -4.8859 26 1 0.5127 1.9064 -4.1626 27 6 -0.4354 2.7944 -6.7361 28 6 -0.3873 2.6611 -8.2650 29 8 -0.9708 1.4164 -8.6587 30 6 -0.1817 0.2642 -8.3318 31 1 -0.3634 0.5144 0.8896 32 1 -0.3633 0.5132 -0.8903 33 1 -0.3633 -1.0276 0.0005 34 1 1.6978 -1.7556 1.2384 35 1 1.6572 -0.2206 2.1399 36 1 3.9417 -1.2844 2.0986 37 1 3.9142 0.3410 1.3675 38 1 7.0249 -3.7043 2.0382 39 1 3.9189 0.3449 -1.3630 40 1 3.9488 -1.2785 -2.0987 41 1 1.2776 0.8881 -2.4069 42 1 0.9182 -1.6550 -6.3158 43 1 -1.4622 2.9650 -6.4122 44 1 0.1957 3.6240 -6.4177 45 1 0.6494 2.6977 -8.5999 46 1 -0.9438 3.4818 -8.7177 47 1 0.7191 0.2482 -8.9453 48 1 -0.7619 -0.6421 -8.5054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966629974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:25 Heat of formation + Delta-G solvation = -15.297973 kcal Electronic energy + Delta-G solvation = -29099.967766 eV Core-core repulsion = 25155.995235 eV Total energy + Delta-G solvation = -3943.972531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90100 -39.69629 -38.36356 -37.66644 -34.73492 -33.24193 -32.78122 -31.79841 -31.43100 -29.76723 -28.93535 -27.69188 -25.69938 -24.20390 -23.80952 -22.94187 -21.69807 -21.33929 -20.22372 -19.82746 -19.27726 -18.41171 -16.86818 -16.67972 -16.20778 -15.88248 -15.65059 -15.19892 -15.06680 -14.70657 -14.43471 -14.09999 -14.00337 -13.84138 -13.66204 -13.47786 -13.34523 -13.22869 -12.84767 -12.66316 -12.40178 -12.23233 -12.12848 -11.74364 -11.72252 -11.34872 -11.27135 -11.00812 -10.92802 -10.71176 -10.18432 -10.17115 -10.06143 -9.89443 -9.72553 -9.46421 -9.10356 -9.05493 -8.55952 -8.19182 -6.99072 -5.93337 -3.30005 1.31404 2.35236 2.69393 3.17161 3.30044 3.40995 3.46825 3.49342 3.51341 4.23844 4.45626 4.52502 4.66693 4.75606 4.80545 4.89574 4.93566 5.00516 5.08097 5.13299 5.17291 5.18133 5.23694 5.41564 5.42690 5.54474 5.67085 5.73485 5.75900 5.76576 5.87499 5.91559 5.96906 6.06047 6.19950 6.29907 6.41082 6.44717 6.47095 6.56774 6.61652 6.64835 6.72765 6.81342 6.90422 7.08012 7.57646 7.96200 8.28035 8.35955 8.94761 9.72350 10.07616 11.22593 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.002584 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.824880 B =10834.260057 C =11315.391093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.126 4.126 5 C 0.122 3.878 6 N -0.601 5.601 7 C -0.259 4.259 8 H 0.087 0.913 9 C 0.023 3.977 10 N -0.906 5.906 11 Si 0.883 3.117 12 H -0.288 1.288 13 H -0.303 1.303 14 H -0.272 1.272 15 C 0.144 3.856 16 C 0.133 3.867 17 H 0.094 0.906 18 N -0.722 5.722 19 C 0.585 3.415 20 O -0.518 6.518 21 C -0.048 4.048 22 C -0.089 4.089 23 C -0.220 4.220 24 C 0.049 3.951 25 N -0.525 5.525 26 H 0.415 0.585 27 C -0.086 4.086 28 C 0.069 3.931 29 O -0.381 6.381 30 C 0.136 3.864 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.021 0.979 40 H 0.069 0.931 41 H 0.387 0.613 42 H 0.151 0.849 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.101 0.899 47 H 0.063 0.937 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 16.418 -14.541 27.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.324 5.324 7 C -0.387 4.387 8 H 0.105 0.895 9 C -0.175 4.175 10 N -0.549 5.549 11 Si 0.713 3.287 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.197 1.197 15 C 0.017 3.983 16 C 0.028 3.972 17 H 0.112 0.888 18 N -0.372 5.372 19 C 0.372 3.628 20 O -0.393 6.393 21 C -0.161 4.161 22 C -0.115 4.115 23 C -0.227 4.227 24 C -0.070 4.070 25 N -0.120 5.120 26 H 0.252 0.748 27 C -0.125 4.125 28 C -0.009 4.009 29 O -0.299 6.299 30 C 0.059 3.941 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.087 0.913 41 H 0.219 0.781 42 H 0.169 0.831 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.076 0.924 46 H 0.119 0.881 47 H 0.081 0.919 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.565 15.469 -14.401 26.853 hybrid contribution 0.498 1.623 1.454 2.236 sum -16.067 17.092 -12.947 26.794 Atomic orbital electron populations 1.21836 0.95522 1.01996 1.00752 1.21308 0.95020 0.99500 0.95276 0.91469 1.22075 0.98328 1.00750 0.95437 1.21406 0.91706 0.96941 0.90323 1.44294 1.48764 1.40344 0.99008 1.18958 1.09752 1.02613 1.07402 0.89501 1.25266 0.97513 0.96644 0.98111 1.69846 1.32820 1.21793 1.30461 0.86955 0.76329 0.84821 0.80559 1.21625 1.23153 1.19718 1.21309 0.90220 0.96682 0.90096 1.21860 0.96371 0.97413 0.81591 0.88788 1.45980 1.66821 1.13644 1.10797 1.16985 0.78082 0.86300 0.81457 1.90903 1.49607 1.14960 1.83804 1.20655 1.14145 0.84113 0.97155 1.20844 1.00884 0.99533 0.90239 1.19914 1.11187 0.93888 0.97711 1.20205 1.04521 0.97497 0.84752 1.41610 1.49776 1.10253 1.10323 0.74796 1.21014 1.01914 0.92595 0.96939 1.22534 0.99158 0.87132 0.92057 1.88018 1.47160 1.14064 1.80651 1.21060 0.95183 0.88689 0.89119 0.92792 0.93469 0.92514 0.91256 0.92191 0.90652 0.95718 0.92759 0.96108 0.91261 0.78066 0.83090 0.89349 0.89606 0.92447 0.88071 0.91933 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.02 37.16 0.34 -1.33 16 2 C -0.09 -1.31 2.27 -90.58 -0.21 -1.52 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -2.13 5.36 -26.61 -0.14 -2.27 16 5 C 0.12 2.60 4.20 -3.71 -0.02 2.59 16 6 N -0.60 -14.43 2.77 -172.05 -0.48 -14.91 16 7 C -0.26 -7.43 10.03 -15.06 -0.15 -7.58 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 10 N -0.91 -28.21 13.97 55.49 0.78 -27.43 16 11 Si 0.88 22.41 24.35 -169.99 -4.14 18.27 16 12 H -0.29 -7.00 6.62 56.52 0.37 -6.62 16 13 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 14 H -0.27 -6.75 6.64 56.52 0.38 -6.38 16 15 C 0.14 2.95 6.12 -3.48 -0.02 2.93 16 16 C 0.13 2.21 2.08 -67.59 -0.14 2.07 16 17 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 18 N -0.72 -9.61 4.36 -54.78 -0.24 -9.84 16 19 C 0.59 9.00 7.76 -12.85 -0.10 8.90 16 20 O -0.52 -10.33 16.54 5.20 0.09 -10.25 16 21 C -0.05 -0.61 7.07 -81.75 -0.58 -1.18 16 22 C -0.09 -1.11 10.63 -39.35 -0.42 -1.53 16 23 C -0.22 -2.33 6.02 -105.01 -0.63 -2.96 16 24 C 0.05 0.45 7.14 -81.83 -0.58 -0.13 16 25 N -0.52 -4.77 5.97 -5.43 -0.03 -4.81 16 26 H 0.41 2.52 8.19 -40.82 -0.33 2.19 16 27 C -0.09 -0.51 6.56 -27.41 -0.18 -0.69 16 28 C 0.07 0.42 6.78 37.44 0.25 0.68 16 29 O -0.38 -3.44 10.75 -35.23 -0.38 -3.81 16 30 C 0.14 1.18 7.25 36.07 0.26 1.45 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.47 7.36 -51.93 -0.38 0.09 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.78 4.48 -51.93 -0.23 1.55 16 37 H 0.02 0.52 7.09 -51.93 -0.37 0.15 16 38 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 1.56 7.93 -51.93 -0.41 1.15 16 41 H 0.39 3.77 7.44 -40.82 -0.30 3.46 16 42 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 43 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 46 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -35.30 374.73 -8.70 -44.00 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.53 Total: 3.14 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.41 Total: 0.00 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.03 Total: -57.00 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.29 Total: -14.06 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.14 Total: 18.27 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.30 -8.70 -44.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966629974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.702 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds