Wall clock time and date at job start Tue Mar 31 2020 17:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00402 * 2 1 4 4 C 1.50706 * 109.47690 * 180.02562 * 3 2 1 5 5 C 1.38351 * 120.34653 * 90.00249 * 4 3 2 6 6 N 1.31930 * 121.07485 * 180.02562 * 5 4 3 7 7 C 1.31689 * 121.87919 * 359.97438 * 6 5 4 8 8 C 1.39519 * 120.56886 * 359.97438 * 7 6 5 9 9 C 1.47849 * 120.55758 * 180.02562 * 8 7 6 10 10 O 1.21550 * 119.99510 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99973 * 359.97438 * 9 8 7 12 12 C 1.46501 * 119.99993 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.49380 * 325.00994 * 12 11 9 14 14 C 1.53189 * 109.49461 * 85.07065 * 12 11 9 15 15 N 1.46991 * 108.73977 * 65.34826 * 14 12 11 16 16 C 1.36939 * 120.61375 * 233.56744 * 15 14 12 17 17 H 1.08002 * 120.00060 * 152.63125 * 16 15 14 18 18 C 1.38815 * 119.99992 * 332.63279 * 16 15 14 19 19 N 1.31621 * 119.99533 * 159.34171 * 18 16 15 20 20 Si 1.86802 * 119.99938 * 339.34482 * 18 16 15 21 21 H 1.48498 * 109.47084 * 92.93656 * 20 18 16 22 22 H 1.48502 * 109.46672 * 212.92863 * 20 18 16 23 23 H 1.48494 * 109.47046 * 332.92901 * 20 18 16 24 24 C 1.46927 * 118.75622 * 53.58869 * 15 14 12 25 25 C 1.53184 * 108.77312 * 306.39283 * 24 15 14 26 26 C 1.53032 * 109.49909 * 204.94377 * 12 11 9 27 27 H 1.09001 * 109.46035 * 181.39868 * 26 12 11 28 28 C 1.52999 * 109.46287 * 61.43327 * 26 12 11 29 29 C 1.38354 * 120.34273 * 270.25793 * 4 3 2 30 30 H 1.08994 * 109.46854 * 59.99817 * 1 2 3 31 31 H 1.08996 * 109.46763 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46563 * 300.00024 * 1 2 3 33 33 H 1.09006 * 109.47335 * 59.99802 * 3 2 1 34 34 H 1.09001 * 109.47043 * 300.00092 * 3 2 1 35 35 H 1.07994 * 119.46285 * 359.97376 * 5 4 3 36 36 H 1.08006 * 119.71337 * 180.02562 * 7 6 5 37 37 H 0.96998 * 120.00280 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.58754 * 185.10788 * 14 12 11 39 39 H 1.09004 * 109.58567 * 305.52861 * 14 12 11 40 40 H 0.97003 * 119.99401 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.58370 * 186.60870 * 24 15 14 42 42 H 1.08997 * 109.70000 * 66.25054 * 24 15 14 43 43 H 1.09004 * 109.50387 * 294.68401 * 25 24 15 44 44 H 1.09004 * 109.50377 * 174.58517 * 25 24 15 45 45 H 1.08998 * 109.46961 * 60.00417 * 28 26 12 46 46 H 1.09008 * 109.47008 * 180.02562 * 28 26 12 47 47 H 1.08994 * 109.46915 * 299.99943 * 28 26 12 48 48 H 1.07997 * 120.86373 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5127 1.1864 -0.0006 5 6 4.2090 1.1315 -1.1949 6 7 5.5240 1.0269 -1.2122 7 6 6.2319 0.9706 -0.1032 8 6 5.6049 1.0211 1.1422 9 6 6.3999 0.9584 2.3871 10 8 5.8430 1.0028 3.4666 11 7 7.7419 0.8511 2.3250 12 6 8.5298 0.7896 3.5586 13 1 8.0657 1.4187 4.3183 14 6 8.5860 -0.6576 4.0576 15 7 9.3289 -1.4657 3.0801 16 6 8.7800 -2.6061 2.5571 17 1 9.0765 -2.9475 1.5763 18 6 7.8424 -3.3233 3.2875 19 7 7.0251 -4.1530 2.6744 20 14 7.7406 -3.1107 5.1406 21 1 6.7359 -2.0664 5.4646 22 1 7.3372 -4.3963 5.7649 23 1 9.0679 -2.7006 5.6654 24 6 10.6714 -1.0273 2.6750 25 6 10.5911 0.4242 2.1919 26 6 9.9508 1.2861 3.2825 27 1 10.5433 1.2167 4.1947 28 6 9.9004 2.7427 2.8171 29 6 4.2095 1.1257 1.1931 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6672 1.1742 -2.1281 36 1 7.3072 0.8855 -0.1582 37 1 8.1863 0.8154 1.4635 38 1 9.0937 -0.6923 5.0215 39 1 7.5735 -1.0479 4.1615 40 1 6.3702 -4.6544 3.1849 41 1 11.0346 -1.6619 1.8667 42 1 11.3512 -1.0926 3.5246 43 1 9.9855 0.4735 1.2869 44 1 11.5946 0.7930 1.9792 45 1 9.4456 3.3569 3.5942 46 1 10.9125 3.0963 2.6199 47 1 9.3075 2.8125 1.9052 48 1 3.6910 1.1627 2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966843444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:31 Heat of formation + Delta-G solvation = -18.050556 kcal Electronic energy + Delta-G solvation = -29854.740363 eV Core-core repulsion = 25910.648471 eV Total energy + Delta-G solvation = -3944.091892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.63846 -39.45980 -37.95663 -37.55664 -34.34170 -33.27710 -32.84828 -31.91837 -31.34753 -29.58997 -27.70977 -27.49238 -25.68832 -24.63277 -23.84527 -22.74325 -22.55817 -21.24113 -20.47605 -18.93133 -17.85363 -17.07915 -16.65958 -16.60972 -16.56520 -15.59805 -15.50663 -15.31658 -14.99667 -14.59107 -14.35291 -13.85438 -13.79075 -13.55881 -13.37137 -13.19950 -13.12799 -13.00031 -12.72540 -12.61037 -12.16116 -12.07338 -11.95136 -11.67061 -11.62069 -11.48270 -11.15757 -10.62457 -10.53905 -10.27079 -10.03277 -9.94019 -9.90060 -9.80599 -9.77264 -9.40723 -9.29712 -9.13501 -8.74380 -8.41478 -6.93754 -5.91128 -3.27262 0.70367 1.14349 3.06789 3.41311 3.44015 3.52800 3.54592 3.71226 4.07453 4.29930 4.58639 4.62410 4.69528 4.86580 4.89634 4.94400 4.96801 5.02712 5.09047 5.12492 5.16285 5.19144 5.20917 5.44936 5.46087 5.49580 5.55133 5.71323 5.72979 5.84062 5.95688 6.04343 6.05729 6.06409 6.13422 6.19581 6.30151 6.36286 6.48819 6.51709 6.60585 6.68629 6.80221 6.91591 6.96798 7.82486 7.88686 7.98890 8.35397 8.57633 8.96079 9.75918 10.11998 11.24405 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.004253 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.992459 B = 6582.242606 C = 7899.572367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.110 3.890 4 C -0.156 4.156 5 C 0.138 3.862 6 N -0.487 5.487 7 C 0.146 3.854 8 C -0.174 4.174 9 C 0.565 3.435 10 O -0.543 6.543 11 N -0.691 5.691 12 C 0.135 3.865 13 H 0.082 0.918 14 C 0.112 3.888 15 N -0.601 5.601 16 C -0.262 4.262 17 H 0.085 0.915 18 C 0.029 3.971 19 N -0.904 5.904 20 Si 0.875 3.125 21 H -0.284 1.284 22 H -0.304 1.304 23 H -0.271 1.271 24 C 0.145 3.855 25 C -0.131 4.131 26 C -0.095 4.095 27 H 0.080 0.920 28 C -0.144 4.144 29 C 0.003 3.997 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.397 0.603 38 H 0.033 0.967 39 H 0.081 0.919 40 H 0.262 0.738 41 H 0.064 0.936 42 H 0.023 0.977 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.539 16.071 -5.842 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.033 3.967 4 C -0.159 4.159 5 C -0.019 4.019 6 N -0.195 5.195 7 C -0.012 4.012 8 C -0.179 4.179 9 C 0.351 3.649 10 O -0.421 6.421 11 N -0.342 5.342 12 C 0.029 3.971 13 H 0.100 0.900 14 C -0.014 4.014 15 N -0.325 5.325 16 C -0.390 4.390 17 H 0.102 0.898 18 C -0.170 4.170 19 N -0.547 5.547 20 Si 0.705 3.295 21 H -0.212 1.212 22 H -0.232 1.232 23 H -0.196 1.196 24 C 0.019 3.981 25 C -0.170 4.170 26 C -0.114 4.114 27 H 0.099 0.901 28 C -0.202 4.202 29 C -0.023 4.023 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.234 0.766 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.476 15.743 -5.866 17.386 hybrid contribution -0.619 0.037 1.504 1.627 sum -5.095 15.780 -4.362 17.147 Atomic orbital electron populations 1.22772 0.80808 1.03095 0.99892 1.88042 1.19737 1.26985 1.95374 1.21204 0.88747 0.85480 1.01269 1.20515 0.95719 1.05342 0.94282 1.22819 0.90015 0.91745 0.97358 1.67731 1.07814 1.13002 1.30918 1.22995 1.00320 0.91072 0.86832 1.21056 0.95096 1.06557 0.95222 1.17861 0.82353 0.76626 0.88085 1.90746 1.70932 1.50872 1.29562 1.45685 1.05614 1.72852 1.10051 1.21540 0.90200 0.98947 0.86424 0.89988 1.21801 0.97935 0.89727 0.91951 1.44314 1.12670 1.25499 1.49996 1.18826 1.20936 0.99685 0.99533 0.89786 1.25239 0.97631 0.96655 0.97507 1.69833 1.19889 1.29811 1.35150 0.87056 0.78160 0.75875 0.88413 1.21173 1.23199 1.19603 1.20953 0.87043 0.92341 0.97728 1.22094 0.99554 0.97624 0.97769 1.21324 0.95495 0.94552 0.99992 0.90138 1.21842 1.01239 0.95884 1.01218 1.21597 0.92565 0.89343 0.98805 0.94012 0.89376 0.93957 0.92017 0.91926 0.82407 0.82373 0.76594 0.94941 0.90074 0.92829 0.91785 0.95905 0.92360 0.92141 0.92961 0.92798 0.92859 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.86 10.69 -35.23 -0.38 -5.24 16 3 C 0.11 1.15 6.08 36.01 0.22 1.36 16 4 C -0.16 -2.05 5.52 -104.53 -0.58 -2.63 16 5 C 0.14 1.78 10.85 -17.47 -0.19 1.59 16 6 N -0.49 -7.21 10.35 -12.91 -0.13 -7.35 16 7 C 0.15 2.21 10.71 -17.14 -0.18 2.02 16 8 C -0.17 -2.90 5.89 -104.82 -0.62 -3.52 16 9 C 0.57 10.71 7.75 -12.33 -0.10 10.61 16 10 O -0.54 -11.98 16.08 5.32 0.09 -11.89 16 11 N -0.69 -11.88 4.21 -54.64 -0.23 -12.11 16 12 C 0.14 2.37 2.24 -67.82 -0.15 2.22 16 13 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 14 C 0.11 2.49 3.80 -3.68 -0.01 2.47 16 15 N -0.60 -13.75 2.69 -172.27 -0.46 -14.21 16 16 C -0.26 -7.22 10.04 -15.06 -0.15 -7.37 16 17 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 18 C 0.03 0.86 5.23 -17.43 -0.09 0.77 16 19 N -0.90 -28.41 13.97 55.49 0.78 -27.64 16 20 Si 0.87 23.32 24.34 -169.99 -4.14 19.18 16 21 H -0.28 -7.69 6.62 56.52 0.37 -7.32 16 22 H -0.30 -8.22 7.11 56.52 0.40 -7.82 16 23 H -0.27 -6.96 6.64 56.52 0.38 -6.59 16 24 C 0.15 2.65 6.52 -3.71 -0.02 2.63 16 25 C -0.13 -1.86 5.20 -26.61 -0.14 -2.00 16 26 C -0.09 -1.32 2.48 -90.58 -0.22 -1.54 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 C -0.14 -1.64 9.05 37.16 0.34 -1.30 16 29 C 0.00 0.05 9.40 -38.87 -0.37 -0.31 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 36 H 0.16 2.09 6.42 -52.48 -0.34 1.75 16 37 H 0.40 6.08 4.70 -40.82 -0.19 5.89 16 38 H 0.03 0.71 7.07 -51.93 -0.37 0.35 16 39 H 0.08 2.11 4.50 -51.93 -0.23 1.88 16 40 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 41 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.83 6.40 -51.93 -0.33 0.49 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 47 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 48 H 0.15 2.23 7.74 -52.49 -0.41 1.82 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -35.24 380.08 -7.23 -42.47 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.32 Total: 4.68 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.16 Total: 6.38 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.05 Total: -61.31 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.29 Total: -17.13 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.14 Total: 19.18 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.24 -7.23 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966843444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.423 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds