Wall clock time and date at job start Tue Mar 31 2020 17:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00402 * 2 1 4 4 C 1.50706 * 109.47690 * 180.02562 * 3 2 1 5 5 C 1.38351 * 120.34653 * 90.00249 * 4 3 2 6 6 N 1.31930 * 121.07485 * 180.02562 * 5 4 3 7 7 C 1.31689 * 121.87919 * 359.97438 * 6 5 4 8 8 C 1.39519 * 120.56886 * 359.97438 * 7 6 5 9 9 C 1.47849 * 120.55758 * 180.02562 * 8 7 6 10 10 O 1.21550 * 119.99510 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99973 * 359.97438 * 9 8 7 12 12 C 1.46501 * 119.99993 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.49380 * 325.00994 * 12 11 9 14 14 C 1.53189 * 109.49461 * 85.07065 * 12 11 9 15 15 N 1.46991 * 108.73977 * 65.34826 * 14 12 11 16 16 C 1.36939 * 120.61375 * 233.56744 * 15 14 12 17 17 H 1.08002 * 120.00060 * 152.63125 * 16 15 14 18 18 C 1.38815 * 119.99992 * 332.63279 * 16 15 14 19 19 N 1.31621 * 119.99533 * 159.34171 * 18 16 15 20 20 Si 1.86802 * 119.99938 * 339.34482 * 18 16 15 21 21 H 1.48498 * 109.47084 * 92.93656 * 20 18 16 22 22 H 1.48502 * 109.46672 * 212.92863 * 20 18 16 23 23 H 1.48494 * 109.47046 * 332.92901 * 20 18 16 24 24 C 1.46927 * 118.75622 * 53.58869 * 15 14 12 25 25 C 1.53184 * 108.77312 * 306.39283 * 24 15 14 26 26 C 1.53032 * 109.49909 * 204.94377 * 12 11 9 27 27 H 1.09001 * 109.46035 * 181.39868 * 26 12 11 28 28 C 1.52999 * 109.46287 * 61.43327 * 26 12 11 29 29 C 1.38354 * 120.34273 * 270.25793 * 4 3 2 30 30 H 1.08994 * 109.46854 * 59.99817 * 1 2 3 31 31 H 1.08996 * 109.46763 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46563 * 300.00024 * 1 2 3 33 33 H 1.09006 * 109.47335 * 59.99802 * 3 2 1 34 34 H 1.09001 * 109.47043 * 300.00092 * 3 2 1 35 35 H 1.07994 * 119.46285 * 359.97376 * 5 4 3 36 36 H 1.08006 * 119.71337 * 180.02562 * 7 6 5 37 37 H 0.96998 * 120.00280 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.58754 * 185.10788 * 14 12 11 39 39 H 1.09004 * 109.58567 * 305.52861 * 14 12 11 40 40 H 0.97003 * 119.99401 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.58370 * 186.60870 * 24 15 14 42 42 H 1.08997 * 109.70000 * 66.25054 * 24 15 14 43 43 H 1.09004 * 109.50387 * 294.68401 * 25 24 15 44 44 H 1.09004 * 109.50377 * 174.58517 * 25 24 15 45 45 H 1.08998 * 109.46961 * 60.00417 * 28 26 12 46 46 H 1.09008 * 109.47008 * 180.02562 * 28 26 12 47 47 H 1.08994 * 109.46915 * 299.99943 * 28 26 12 48 48 H 1.07997 * 120.86373 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5127 1.1864 -0.0006 5 6 4.2090 1.1315 -1.1949 6 7 5.5240 1.0269 -1.2122 7 6 6.2319 0.9706 -0.1032 8 6 5.6049 1.0211 1.1422 9 6 6.3999 0.9584 2.3871 10 8 5.8430 1.0028 3.4666 11 7 7.7419 0.8511 2.3250 12 6 8.5298 0.7896 3.5586 13 1 8.0657 1.4187 4.3183 14 6 8.5860 -0.6576 4.0576 15 7 9.3289 -1.4657 3.0801 16 6 8.7800 -2.6061 2.5571 17 1 9.0765 -2.9475 1.5763 18 6 7.8424 -3.3233 3.2875 19 7 7.0251 -4.1530 2.6744 20 14 7.7406 -3.1107 5.1406 21 1 6.7359 -2.0664 5.4646 22 1 7.3372 -4.3963 5.7649 23 1 9.0679 -2.7006 5.6654 24 6 10.6714 -1.0273 2.6750 25 6 10.5911 0.4242 2.1919 26 6 9.9508 1.2861 3.2825 27 1 10.5433 1.2167 4.1947 28 6 9.9004 2.7427 2.8171 29 6 4.2095 1.1257 1.1931 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6672 1.1742 -2.1281 36 1 7.3072 0.8855 -0.1582 37 1 8.1863 0.8154 1.4635 38 1 9.0937 -0.6923 5.0215 39 1 7.5735 -1.0479 4.1615 40 1 6.3702 -4.6544 3.1849 41 1 11.0346 -1.6619 1.8667 42 1 11.3512 -1.0926 3.5246 43 1 9.9855 0.4735 1.2869 44 1 11.5946 0.7930 1.9792 45 1 9.4456 3.3569 3.5942 46 1 10.9125 3.0963 2.6199 47 1 9.3075 2.8125 1.9052 48 1 3.6910 1.1627 2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966843444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:30 Heat of formation + Delta-G solvation = -43.787020 kcal Electronic energy + Delta-G solvation = -29855.856380 eV Core-core repulsion = 25910.648471 eV Total energy + Delta-G solvation = -3945.207909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.88532 -40.77933 -39.19039 -38.67985 -36.07552 -34.62021 -34.03980 -33.37231 -33.06285 -31.02212 -29.12364 -28.41975 -26.52676 -26.03951 -25.46748 -24.09306 -23.74364 -22.83247 -21.73901 -20.44324 -19.10193 -18.83202 -17.94927 -17.74128 -17.40967 -17.27459 -16.67681 -16.52295 -16.20756 -16.08043 -15.85582 -15.24820 -15.14354 -15.07950 -14.91539 -14.60816 -14.32368 -14.25772 -14.00707 -13.78832 -13.65162 -13.35832 -13.16136 -12.92762 -12.89630 -12.53970 -12.42683 -12.37241 -12.20351 -11.84236 -11.68807 -11.42900 -11.27206 -11.13591 -10.99913 -10.77243 -10.73766 -10.51935 -10.30546 -10.02345 -8.88970 -8.19643 -5.47712 -0.46277 -0.00363 1.26632 1.30194 1.38439 1.73875 2.12149 2.38077 2.61149 3.03409 3.07689 3.23557 3.34716 3.60964 3.69930 3.72943 3.76962 3.83589 3.93340 4.01695 4.02402 4.27226 4.33411 4.46500 4.49098 4.52401 4.53999 4.61094 4.63882 4.65030 4.72835 4.85124 4.87669 4.90359 4.90491 5.02457 5.04737 5.13658 5.20250 5.22190 5.42238 5.43484 5.47931 5.57480 5.86578 6.10905 6.18408 6.48292 6.71233 6.91012 7.14783 7.62474 8.03021 8.99812 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.004253 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.992459 B = 6582.242606 C = 7899.572367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.109 3.891 4 C -0.152 4.152 5 C 0.142 3.858 6 N -0.499 5.499 7 C 0.145 3.855 8 C -0.199 4.199 9 C 0.559 3.441 10 O -0.584 6.584 11 N -0.683 5.683 12 C 0.139 3.861 13 H 0.079 0.921 14 C 0.110 3.890 15 N -0.611 5.611 16 C -0.230 4.230 17 H 0.061 0.939 18 C -0.030 4.030 19 N -0.954 5.954 20 Si 0.930 3.070 21 H -0.299 1.299 22 H -0.313 1.313 23 H -0.253 1.253 24 C 0.137 3.863 25 C -0.121 4.121 26 C -0.086 4.086 27 H 0.092 0.908 28 C -0.137 4.137 29 C -0.013 4.013 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.196 0.804 36 H 0.173 0.827 37 H 0.407 0.593 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.256 0.744 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 18.750 -7.094 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C 0.032 3.968 4 C -0.154 4.154 5 C -0.014 4.014 6 N -0.207 5.207 7 C -0.013 4.013 8 C -0.204 4.204 9 C 0.346 3.654 10 O -0.466 6.466 11 N -0.333 5.333 12 C 0.033 3.967 13 H 0.097 0.903 14 C -0.016 4.016 15 N -0.336 5.336 16 C -0.360 4.360 17 H 0.078 0.922 18 C -0.225 4.225 19 N -0.600 5.600 20 Si 0.761 3.239 21 H -0.227 1.227 22 H -0.242 1.242 23 H -0.177 1.177 24 C 0.013 3.987 25 C -0.160 4.160 26 C -0.105 4.105 27 H 0.110 0.890 28 C -0.194 4.194 29 C -0.039 4.039 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.213 0.787 36 H 0.190 0.810 37 H 0.245 0.755 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.072 0.928 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.246 18.472 -7.126 20.063 hybrid contribution -0.990 -0.757 1.799 2.189 sum -4.237 17.714 -5.326 18.977 Atomic orbital electron populations 1.22953 0.78885 1.03717 1.01484 1.87975 1.21969 1.28313 1.95724 1.21362 0.86684 0.85171 1.03539 1.20829 0.97461 1.03810 0.93325 1.23468 0.89555 0.89676 0.98730 1.67812 1.08858 1.13515 1.30465 1.23168 1.01106 0.90697 0.86345 1.20997 0.95567 1.08998 0.94812 1.18312 0.82934 0.75767 0.88386 1.90710 1.71751 1.52951 1.31200 1.45649 1.05205 1.71968 1.10508 1.21475 0.92958 0.95769 0.86540 0.90269 1.21741 0.95347 0.92248 0.92311 1.44421 1.14808 1.24361 1.49970 1.18817 1.18995 1.00045 0.98166 0.92174 1.25756 0.98523 0.97580 1.00599 1.69951 1.21657 1.32298 1.36122 0.86165 0.78356 0.74630 0.84775 1.22741 1.24171 1.17687 1.21226 0.84414 0.94935 0.98111 1.22010 1.01906 0.94551 0.97508 1.21318 0.92437 0.96151 1.00628 0.88968 1.21774 1.02919 0.93575 1.01167 1.21734 0.92477 0.90026 0.99673 0.91663 0.89373 0.93066 0.91032 0.88356 0.78707 0.81001 0.75460 0.94447 0.94502 0.93506 0.92200 0.94530 0.92335 0.88224 0.92832 0.90223 0.92799 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -10.18 10.69 -148.98 -1.59 -11.77 16 3 C 0.11 2.06 6.08 71.24 0.43 2.49 16 4 C -0.15 -3.83 5.52 -19.81 -0.11 -3.94 16 5 C 0.14 3.38 10.85 84.70 0.92 4.30 16 6 N -0.50 -14.08 10.35 -194.76 -2.01 -16.09 16 7 C 0.14 4.31 10.71 85.02 0.91 5.22 16 8 C -0.20 -6.76 5.89 -19.99 -0.12 -6.88 16 9 C 0.56 21.81 7.75 86.79 0.67 22.48 16 10 O -0.58 -27.03 16.08 -3.87 -0.06 -27.10 16 11 N -0.68 -23.28 4.21 -445.05 -1.87 -25.16 16 12 C 0.14 4.74 2.24 45.07 0.10 4.84 16 13 H 0.08 2.78 7.58 -2.38 -0.02 2.76 16 14 C 0.11 4.83 3.80 86.35 0.33 5.16 16 15 N -0.61 -27.60 2.69 -698.94 -1.88 -29.48 16 16 C -0.23 -12.94 10.04 84.03 0.84 -12.09 16 17 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 18 C -0.03 -1.81 5.23 84.86 0.44 -1.37 16 19 N -0.95 -62.50 13.97 21.65 0.30 -62.19 16 20 Si 0.93 50.18 24.34 68.60 1.67 51.85 16 21 H -0.30 -16.68 6.62 99.48 0.66 -16.02 16 22 H -0.31 -17.09 7.11 99.48 0.71 -16.38 16 23 H -0.25 -12.65 6.64 99.48 0.66 -11.99 16 24 C 0.14 4.68 6.52 86.36 0.56 5.24 16 25 C -0.12 -2.97 5.20 30.67 0.16 -2.81 16 26 C -0.09 -2.11 2.48 -10.77 -0.03 -2.14 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 C -0.14 -2.55 9.05 71.98 0.65 -1.90 16 29 C -0.01 -0.40 9.40 22.73 0.21 -0.18 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.20 8.10 -2.38 -0.02 1.18 16 34 H 0.10 1.15 8.09 -2.39 -0.02 1.13 16 35 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.17 4.39 6.42 -2.91 -0.02 4.38 16 37 H 0.41 12.03 4.70 -92.71 -0.44 11.60 16 38 H 0.04 1.61 7.07 -2.39 -0.02 1.59 16 39 H 0.04 1.97 4.50 -2.38 -0.01 1.96 16 40 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 41 H 0.06 2.08 7.93 -2.39 -0.02 2.06 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 1.46 6.40 -2.39 -0.02 1.44 16 44 H 0.10 1.79 8.14 -2.38 -0.02 1.78 16 45 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.05 1.01 7.54 -2.39 -0.02 0.99 16 48 H 0.14 4.45 7.74 -2.91 -0.02 4.43 16 Total: -1.00 -80.99 380.08 2.22 -78.77 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.44 Total: 21.10 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 7.23 Total: 20.07 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -5.46 Total: -132.92 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.65 Total: -38.87 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 1.67 Total: 51.85 kcal Total: -80.99 2.22 -78.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966843444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.980 kcal (2) G-P(sol) polarization free energy of solvation -80.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds