Wall clock time and date at job start Tue Mar 31 2020 17:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00362 * 2 1 4 4 C 1.50703 * 109.47467 * 180.02562 * 3 2 1 5 5 C 1.38352 * 120.35110 * 89.99848 * 4 3 2 6 6 N 1.31923 * 121.07745 * 180.02562 * 5 4 3 7 7 C 1.31685 * 121.88449 * 0.02562 * 6 5 4 8 8 C 1.39522 * 120.56421 * 0.02562 * 7 6 5 9 9 C 1.47842 * 120.55945 * 179.97438 * 8 7 6 10 10 O 1.21554 * 120.00276 * 179.97438 * 9 8 7 11 11 N 1.34780 * 120.00049 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00011 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.50194 * 35.06498 * 12 11 9 14 14 C 1.53183 * 109.49809 * 274.99484 * 12 11 9 15 15 N 1.46927 * 108.78012 * 185.41467 * 14 12 11 16 16 C 1.36933 * 120.63353 * 233.59018 * 15 14 12 17 17 H 1.08000 * 120.00191 * 151.84471 * 16 15 14 18 18 C 1.38816 * 120.00216 * 331.84389 * 16 15 14 19 19 N 1.31624 * 119.99356 * 343.07025 * 18 16 15 20 20 Si 1.86793 * 120.00395 * 163.07047 * 18 16 15 21 21 H 1.48493 * 109.47484 * 90.00085 * 20 18 16 22 22 H 1.48503 * 109.47169 * 210.00310 * 20 18 16 23 23 H 1.48506 * 109.47138 * 329.99723 * 20 18 16 24 24 C 1.46927 * 118.73625 * 53.60636 * 15 14 12 25 25 C 1.53188 * 108.89428 * 306.32307 * 24 15 14 26 26 C 1.53047 * 109.49880 * 155.15813 * 12 11 9 27 27 H 1.08999 * 109.45547 * 61.30470 * 26 12 11 28 28 C 1.53002 * 109.45598 * 301.33854 * 26 12 11 29 29 C 1.38363 * 120.34672 * 270.30004 * 4 3 2 30 30 H 1.09001 * 109.47008 * 60.00150 * 1 2 3 31 31 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46784 * 300.00181 * 1 2 3 33 33 H 1.08997 * 109.47222 * 59.99432 * 3 2 1 34 34 H 1.09011 * 109.46878 * 299.99595 * 3 2 1 35 35 H 1.08002 * 119.46092 * 359.97385 * 5 4 3 36 36 H 1.08003 * 119.72195 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99735 * 359.97438 * 11 9 8 38 38 H 1.08997 * 109.58943 * 65.62584 * 14 12 11 39 39 H 1.08997 * 109.59011 * 305.20183 * 14 12 11 40 40 H 0.96997 * 119.99488 * 180.02562 * 19 18 16 41 41 H 1.09007 * 109.58506 * 66.18326 * 24 15 14 42 42 H 1.09000 * 109.58539 * 186.46214 * 24 15 14 43 43 H 1.08999 * 109.49809 * 174.65694 * 25 24 15 44 44 H 1.08993 * 109.50069 * 294.75424 * 25 24 15 45 45 H 1.08999 * 109.47631 * 60.00181 * 28 26 12 46 46 H 1.09003 * 109.46594 * 180.02562 * 28 26 12 47 47 H 1.09002 * 109.47240 * 299.99097 * 28 26 12 48 48 H 1.07998 * 120.85268 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2090 1.1314 -1.1948 6 7 5.5240 1.0267 -1.2121 7 6 6.2318 0.9695 -0.1032 8 6 5.6046 1.0179 1.1422 9 6 6.3994 0.9531 2.3871 10 8 5.8425 0.9965 3.4667 11 7 7.7415 0.8468 2.3251 12 6 8.5291 0.7831 3.5587 13 1 7.9721 0.2343 4.3180 14 6 8.8120 2.2032 4.0585 15 7 9.7093 2.1260 5.2194 16 6 9.3758 2.7333 6.4006 17 1 9.7455 2.3370 7.3348 18 6 8.5625 3.8582 6.3973 19 7 8.3831 4.5373 5.2842 20 14 7.7228 4.4083 7.9726 21 1 8.6062 5.3545 8.7001 22 1 6.4416 5.0823 7.6413 23 1 7.4527 3.2253 8.8287 24 6 10.9714 1.3852 5.0888 25 6 10.6672 -0.0270 4.5792 26 6 9.8549 0.0704 3.2821 27 1 10.4219 0.6332 2.5407 28 6 9.5758 -1.3366 2.7498 29 6 4.2095 1.1248 1.1931 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.6672 1.1740 -2.1282 36 1 7.3070 0.8835 -0.1581 37 1 8.1860 0.8125 1.4635 38 1 7.8769 2.6809 4.3506 39 1 9.2882 2.7813 3.2666 40 1 7.8152 5.3235 5.2819 41 1 11.6236 1.8966 4.3808 42 1 11.4622 1.3254 6.0602 43 1 11.6019 -0.5541 4.3883 44 1 10.0905 -0.5681 5.3293 45 1 9.0004 -1.2684 1.8266 46 1 10.5200 -1.8446 2.5532 47 1 9.0083 -1.8996 3.4909 48 1 3.6908 1.1611 2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966843555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:34 Heat of formation + Delta-G solvation = -25.986212 kcal Electronic energy + Delta-G solvation = -29001.146408 eV Core-core repulsion = 25056.710400 eV Total energy + Delta-G solvation = -3944.436008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.74801 -39.28173 -38.04307 -37.47846 -34.43133 -33.39246 -33.02457 -32.06947 -30.95026 -28.89224 -27.76005 -27.33648 -25.83308 -24.70565 -23.95505 -22.84333 -22.04806 -21.03642 -20.11058 -19.39718 -17.77096 -17.13142 -16.78081 -16.72771 -16.67315 -15.74597 -15.58901 -15.13130 -14.96142 -14.54084 -14.05850 -13.77942 -13.71391 -13.48140 -13.38356 -13.28787 -13.18710 -12.92070 -12.73477 -12.42216 -12.18672 -11.99789 -11.78443 -11.64591 -11.58763 -10.90127 -10.69159 -10.66263 -10.45771 -10.19500 -10.15100 -10.07799 -9.98856 -9.92746 -9.80924 -9.51091 -9.35383 -9.29919 -8.56541 -8.42196 -6.64604 -5.75189 -3.18385 0.53157 0.97334 2.94477 3.36364 3.42909 3.49482 3.51423 3.52454 3.90917 4.12853 4.47893 4.53532 4.57307 4.70017 4.74824 4.89019 4.99127 5.02683 5.09995 5.15712 5.25443 5.30949 5.34414 5.38652 5.40915 5.51907 5.59706 5.88840 5.91212 5.95507 6.00100 6.02811 6.11820 6.24290 6.33894 6.38797 6.45862 6.51595 6.72579 6.74940 6.75227 6.90072 6.97177 7.28526 7.64350 7.72234 7.81128 7.86733 8.47844 8.53690 9.23565 9.87591 10.42512 11.32890 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011569 B = 0.003258 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.717871 B = 8592.824248 C =10175.636744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.108 3.892 4 C -0.153 4.153 5 C 0.136 3.864 6 N -0.488 5.488 7 C 0.138 3.862 8 C -0.176 4.176 9 C 0.558 3.442 10 O -0.524 6.524 11 N -0.710 5.710 12 C 0.124 3.876 13 H 0.084 0.916 14 C 0.166 3.834 15 N -0.588 5.588 16 C -0.256 4.256 17 H 0.066 0.934 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.141 3.859 25 C -0.125 4.125 26 C -0.093 4.093 27 H 0.068 0.932 28 C -0.145 4.145 29 C 0.002 3.998 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.391 0.609 38 H 0.095 0.905 39 H 0.018 0.982 40 H 0.253 0.747 41 H 0.018 0.982 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 -9.315 -14.521 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.155 4.155 5 C -0.021 4.021 6 N -0.196 5.196 7 C -0.020 4.020 8 C -0.181 4.181 9 C 0.342 3.658 10 O -0.401 6.401 11 N -0.361 5.361 12 C 0.019 3.981 13 H 0.102 0.898 14 C 0.039 3.961 15 N -0.310 5.310 16 C -0.385 4.385 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.543 5.543 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.015 3.985 25 C -0.165 4.165 26 C -0.112 4.112 27 H 0.086 0.914 28 C -0.202 4.202 29 C -0.024 4.024 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.176 0.824 36 H 0.178 0.822 37 H 0.225 0.775 38 H 0.113 0.887 39 H 0.036 0.964 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.750 -9.319 -14.521 19.346 hybrid contribution -0.886 0.655 1.067 1.534 sum -9.637 -8.664 -13.454 18.680 Atomic orbital electron populations 1.22776 0.80662 1.03003 1.00162 1.87975 1.19877 1.27190 1.95456 1.21235 0.88646 0.85358 1.01657 1.20544 0.95796 1.04954 0.94249 1.22832 0.89969 0.91860 0.97424 1.67729 1.07817 1.13074 1.30932 1.23030 1.00291 0.91866 0.86847 1.21173 0.95150 1.06464 0.95320 1.17902 0.82436 0.77373 0.88056 1.90828 1.70847 1.49048 1.29327 1.45977 1.05908 1.73967 1.10241 1.22052 0.90010 1.01325 0.84688 0.89791 1.21095 0.96887 0.89548 0.88528 1.43946 1.15785 1.60446 1.10851 1.19126 1.28841 1.05711 0.84848 0.91647 1.25041 1.01742 0.95561 0.96934 1.70014 1.40146 1.17804 1.26314 0.86307 0.79096 0.78372 0.83061 1.21443 1.21551 1.20381 1.20967 0.89114 0.89950 0.98455 1.22119 0.98457 0.99807 0.96092 1.21368 0.96135 0.95379 0.98294 0.91408 1.21858 1.00844 0.96927 1.00584 1.21664 0.92645 0.89154 0.98935 0.93912 0.89448 0.93791 0.91720 0.91768 0.82351 0.82248 0.77464 0.88713 0.96438 0.93690 0.96399 0.92610 0.92518 0.92087 0.93266 0.93047 0.92897 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.96 10.69 -35.23 -0.38 -4.34 16 3 C 0.11 0.96 6.08 36.01 0.22 1.18 16 4 C -0.15 -1.72 5.52 -104.53 -0.58 -2.29 16 5 C 0.14 1.46 10.85 -17.47 -0.19 1.27 16 6 N -0.49 -6.01 10.34 -12.91 -0.13 -6.14 16 7 C 0.14 1.70 10.71 -17.14 -0.18 1.51 16 8 C -0.18 -2.53 5.89 -104.82 -0.62 -3.15 16 9 C 0.56 9.85 7.75 -12.33 -0.10 9.75 16 10 O -0.52 -11.59 16.09 5.32 0.09 -11.50 16 11 N -0.71 -11.41 4.33 -54.64 -0.24 -11.65 16 12 C 0.12 2.37 2.07 -67.81 -0.14 2.23 16 13 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 14 C 0.17 4.02 4.88 -3.71 -0.02 4.00 16 15 N -0.59 -14.82 2.99 -172.32 -0.52 -15.33 16 16 C -0.26 -7.16 9.58 -15.06 -0.14 -7.31 16 17 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 18 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 19 N -0.90 -26.77 11.20 55.49 0.62 -26.15 16 20 Si 0.90 22.51 29.59 -169.99 -5.03 17.48 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.14 2.90 6.50 -3.71 -0.02 2.88 16 25 C -0.13 -2.08 5.39 -26.45 -0.14 -2.22 16 26 C -0.09 -1.45 2.27 -90.41 -0.21 -1.66 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 C -0.14 -1.86 9.02 37.16 0.34 -1.52 16 29 C 0.00 0.03 9.40 -38.87 -0.37 -0.33 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.06 0.42 8.09 -51.92 -0.42 0.00 16 35 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.16 1.56 6.42 -52.48 -0.34 1.22 16 37 H 0.39 4.92 6.37 -40.82 -0.26 4.66 16 38 H 0.09 2.71 6.06 -51.93 -0.31 2.39 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.15 2.05 7.74 -52.49 -0.41 1.64 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -34.33 389.70 -8.38 -42.71 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.55 Total: 3.29 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -1.12 Total: 5.76 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.26 Total: -59.27 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.29 Total: -15.84 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.33 -8.38 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966843555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.722 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds