Wall clock time and date at job start Tue Mar 31 2020 17:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00362 * 2 1 4 4 C 1.50703 * 109.47467 * 180.02562 * 3 2 1 5 5 C 1.38352 * 120.35110 * 89.99848 * 4 3 2 6 6 N 1.31923 * 121.07745 * 180.02562 * 5 4 3 7 7 C 1.31685 * 121.88449 * 0.02562 * 6 5 4 8 8 C 1.39522 * 120.56421 * 0.02562 * 7 6 5 9 9 C 1.47842 * 120.55945 * 179.97438 * 8 7 6 10 10 O 1.21554 * 120.00276 * 179.97438 * 9 8 7 11 11 N 1.34780 * 120.00049 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00011 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.50194 * 35.06498 * 12 11 9 14 14 C 1.53183 * 109.49809 * 274.99484 * 12 11 9 15 15 N 1.46927 * 108.78012 * 185.41467 * 14 12 11 16 16 C 1.36933 * 120.63353 * 233.59018 * 15 14 12 17 17 H 1.08000 * 120.00191 * 151.84471 * 16 15 14 18 18 C 1.38816 * 120.00216 * 331.84389 * 16 15 14 19 19 N 1.31624 * 119.99356 * 343.07025 * 18 16 15 20 20 Si 1.86793 * 120.00395 * 163.07047 * 18 16 15 21 21 H 1.48493 * 109.47484 * 90.00085 * 20 18 16 22 22 H 1.48503 * 109.47169 * 210.00310 * 20 18 16 23 23 H 1.48506 * 109.47138 * 329.99723 * 20 18 16 24 24 C 1.46927 * 118.73625 * 53.60636 * 15 14 12 25 25 C 1.53188 * 108.89428 * 306.32307 * 24 15 14 26 26 C 1.53047 * 109.49880 * 155.15813 * 12 11 9 27 27 H 1.08999 * 109.45547 * 61.30470 * 26 12 11 28 28 C 1.53002 * 109.45598 * 301.33854 * 26 12 11 29 29 C 1.38363 * 120.34672 * 270.30004 * 4 3 2 30 30 H 1.09001 * 109.47008 * 60.00150 * 1 2 3 31 31 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46784 * 300.00181 * 1 2 3 33 33 H 1.08997 * 109.47222 * 59.99432 * 3 2 1 34 34 H 1.09011 * 109.46878 * 299.99595 * 3 2 1 35 35 H 1.08002 * 119.46092 * 359.97385 * 5 4 3 36 36 H 1.08003 * 119.72195 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99735 * 359.97438 * 11 9 8 38 38 H 1.08997 * 109.58943 * 65.62584 * 14 12 11 39 39 H 1.08997 * 109.59011 * 305.20183 * 14 12 11 40 40 H 0.96997 * 119.99488 * 180.02562 * 19 18 16 41 41 H 1.09007 * 109.58506 * 66.18326 * 24 15 14 42 42 H 1.09000 * 109.58539 * 186.46214 * 24 15 14 43 43 H 1.08999 * 109.49809 * 174.65694 * 25 24 15 44 44 H 1.08993 * 109.50069 * 294.75424 * 25 24 15 45 45 H 1.08999 * 109.47631 * 60.00181 * 28 26 12 46 46 H 1.09003 * 109.46594 * 180.02562 * 28 26 12 47 47 H 1.09002 * 109.47240 * 299.99097 * 28 26 12 48 48 H 1.07998 * 120.85268 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2090 1.1314 -1.1948 6 7 5.5240 1.0267 -1.2121 7 6 6.2318 0.9695 -0.1032 8 6 5.6046 1.0179 1.1422 9 6 6.3994 0.9531 2.3871 10 8 5.8425 0.9965 3.4667 11 7 7.7415 0.8468 2.3251 12 6 8.5291 0.7831 3.5587 13 1 7.9721 0.2343 4.3180 14 6 8.8120 2.2032 4.0585 15 7 9.7093 2.1260 5.2194 16 6 9.3758 2.7333 6.4006 17 1 9.7455 2.3370 7.3348 18 6 8.5625 3.8582 6.3973 19 7 8.3831 4.5373 5.2842 20 14 7.7228 4.4083 7.9726 21 1 8.6062 5.3545 8.7001 22 1 6.4416 5.0823 7.6413 23 1 7.4527 3.2253 8.8287 24 6 10.9714 1.3852 5.0888 25 6 10.6672 -0.0270 4.5792 26 6 9.8549 0.0704 3.2821 27 1 10.4219 0.6332 2.5407 28 6 9.5758 -1.3366 2.7498 29 6 4.2095 1.1248 1.1931 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.6672 1.1740 -2.1282 36 1 7.3070 0.8835 -0.1581 37 1 8.1860 0.8125 1.4635 38 1 7.8769 2.6809 4.3506 39 1 9.2882 2.7813 3.2666 40 1 7.8152 5.3235 5.2819 41 1 11.6236 1.8966 4.3808 42 1 11.4622 1.3254 6.0602 43 1 11.6019 -0.5541 4.3883 44 1 10.0905 -0.5681 5.3293 45 1 9.0004 -1.2684 1.8266 46 1 10.5200 -1.8446 2.5532 47 1 9.0083 -1.8996 3.4909 48 1 3.6908 1.1611 2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966843555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:33 Heat of formation + Delta-G solvation = -49.951412 kcal Electronic energy + Delta-G solvation = -29002.185617 eV Core-core repulsion = 25056.710400 eV Total energy + Delta-G solvation = -3945.475217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.84850 -40.61017 -39.11664 -38.67337 -36.16194 -34.84911 -34.06375 -33.23508 -32.75210 -30.45518 -28.99995 -28.42180 -26.51967 -26.15224 -25.54027 -23.87426 -23.45405 -22.64805 -21.54365 -20.88444 -18.94282 -18.76423 -18.09109 -17.69305 -17.39961 -17.00782 -16.71120 -16.45390 -16.11516 -16.07050 -15.64004 -15.28935 -15.24772 -14.97152 -14.65773 -14.46739 -14.24590 -14.10036 -13.95144 -13.56369 -13.37338 -13.28612 -13.07020 -12.91738 -12.73072 -12.57146 -12.38732 -12.37417 -12.19681 -11.92303 -11.64351 -11.58423 -11.22613 -11.16445 -11.00621 -10.74082 -10.56175 -10.52024 -10.32007 -10.07446 -8.69697 -7.90848 -5.36353 -0.47433 -0.01167 1.39154 1.43458 1.51636 1.74508 2.04387 2.47716 2.59033 3.02783 3.22898 3.26602 3.57467 3.69034 3.70952 3.78362 3.81317 3.84432 3.99178 4.01663 4.16249 4.28558 4.46462 4.48222 4.52432 4.55850 4.57771 4.61257 4.66836 4.73420 4.88253 4.89993 4.92624 4.98431 5.04170 5.12560 5.18223 5.19994 5.28244 5.39057 5.43418 5.45529 5.52747 5.60892 5.76738 6.14889 6.34595 6.50185 6.70629 7.09933 7.18720 7.83855 8.32968 9.13974 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011569 B = 0.003258 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.717871 B = 8592.824248 C =10175.636744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.107 3.893 4 C -0.151 4.151 5 C 0.146 3.854 6 N -0.496 5.496 7 C 0.147 3.853 8 C -0.196 4.196 9 C 0.556 3.444 10 O -0.580 6.580 11 N -0.696 5.696 12 C 0.141 3.859 13 H 0.051 0.949 14 C 0.179 3.821 15 N -0.609 5.609 16 C -0.264 4.264 17 H 0.067 0.933 18 C -0.051 4.051 19 N -0.930 5.930 20 Si 0.961 3.039 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.273 1.273 24 C 0.135 3.865 25 C -0.115 4.115 26 C -0.086 4.086 27 H 0.083 0.917 28 C -0.136 4.136 29 C -0.013 4.013 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.196 0.804 36 H 0.185 0.815 37 H 0.411 0.589 38 H 0.043 0.957 39 H 0.001 0.999 40 H 0.247 0.753 41 H 0.023 0.977 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.041 0.959 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.521 -10.881 -16.962 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.031 3.969 4 C -0.153 4.153 5 C -0.011 4.011 6 N -0.204 5.204 7 C -0.011 4.011 8 C -0.201 4.201 9 C 0.343 3.657 10 O -0.461 6.461 11 N -0.348 5.348 12 C 0.035 3.965 13 H 0.069 0.931 14 C 0.051 3.949 15 N -0.333 5.333 16 C -0.394 4.394 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.202 1.202 22 H -0.224 1.224 23 H -0.198 1.198 24 C 0.010 3.990 25 C -0.155 4.155 26 C -0.105 4.105 27 H 0.101 0.899 28 C -0.194 4.194 29 C -0.039 4.039 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.213 0.787 36 H 0.201 0.799 37 H 0.249 0.751 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.407 -10.918 -17.000 21.883 hybrid contribution -1.017 1.140 1.773 2.340 sum -9.423 -9.778 -15.227 20.403 Atomic orbital electron populations 1.22959 0.78973 1.03907 1.01269 1.87924 1.21787 1.27838 1.95704 1.21331 0.87017 0.85349 1.03232 1.20787 0.97221 1.03893 0.93368 1.23457 0.89637 0.89439 0.98550 1.67855 1.08614 1.13548 1.30389 1.23315 1.01422 0.90561 0.85841 1.20928 0.95221 1.09484 0.94507 1.18465 0.82829 0.75880 0.88545 1.90794 1.71914 1.51669 1.31712 1.45751 1.05496 1.73219 1.10309 1.21555 0.91968 0.97846 0.85178 0.93072 1.20786 0.94171 0.92077 0.87820 1.44226 1.17919 1.60869 1.10246 1.19474 1.28366 1.05415 0.86165 0.91494 1.25792 1.02902 0.96159 0.99760 1.70169 1.41026 1.18199 1.28150 0.85368 0.77733 0.78074 0.79906 1.20250 1.22364 1.19775 1.21187 0.87172 0.91705 0.98941 1.22022 1.00342 0.97055 0.96043 1.21340 0.93540 0.97180 0.98409 0.89918 1.21785 1.02446 0.94463 1.00657 1.21732 0.92695 0.89918 0.99577 0.91976 0.88752 0.93486 0.91704 0.88646 0.78709 0.79869 0.75055 0.93887 0.98070 0.94443 0.95927 0.92662 0.88393 0.93205 0.91836 0.90205 0.93938 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.85 10.69 -148.98 -1.59 -9.44 16 3 C 0.11 1.73 6.08 71.24 0.43 2.17 16 4 C -0.15 -3.19 5.52 -19.81 -0.11 -3.30 16 5 C 0.15 2.74 10.85 84.71 0.92 3.66 16 6 N -0.50 -11.00 10.34 -194.76 -2.01 -13.01 16 7 C 0.15 3.39 10.71 85.02 0.91 4.30 16 8 C -0.20 -5.73 5.89 -19.99 -0.12 -5.85 16 9 C 0.56 20.56 7.75 86.78 0.67 21.23 16 10 O -0.58 -27.67 16.09 -3.89 -0.06 -27.74 16 11 N -0.70 -22.61 4.33 -445.05 -1.92 -24.54 16 12 C 0.14 5.49 2.07 45.07 0.09 5.58 16 13 H 0.05 2.36 7.58 -2.39 -0.02 2.34 16 14 C 0.18 9.02 4.88 86.36 0.42 9.44 16 15 N -0.61 -31.64 2.99 -699.11 -2.09 -33.73 16 16 C -0.26 -15.27 9.58 84.04 0.81 -14.46 16 17 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 18 C -0.05 -3.00 4.92 84.86 0.42 -2.58 16 19 N -0.93 -58.11 11.20 21.65 0.24 -57.87 16 20 Si 0.96 47.97 29.59 68.60 2.03 50.00 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 23 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 24 C 0.13 5.47 6.50 86.36 0.56 6.03 16 25 C -0.12 -3.60 5.39 30.77 0.17 -3.44 16 26 C -0.09 -2.52 2.27 -10.66 -0.02 -2.54 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 C -0.14 -3.05 9.02 71.98 0.65 -2.40 16 29 C -0.01 -0.35 9.40 22.73 0.21 -0.14 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 34 H 0.10 0.94 8.09 -2.38 -0.02 0.92 16 35 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.18 3.13 6.42 -2.91 -0.02 3.11 16 37 H 0.41 9.79 6.37 -92.71 -0.59 9.20 16 38 H 0.04 2.62 6.06 -2.39 -0.01 2.60 16 39 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.05 2.20 7.93 -2.39 -0.02 2.19 16 43 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.06 1.25 7.36 -2.39 -0.02 1.23 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.13 4.01 7.74 -2.91 -0.02 3.99 16 Total: -1.00 -80.44 389.70 2.21 -78.23 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.37 Total: 18.87 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 7.26 Total: 19.24 kcal Atomic # 7 Polarization: -123.36 SS G_CDS: -5.79 Total: -129.15 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.65 Total: -37.18 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -80.44 2.21 -78.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966843555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.274 kcal (2) G-P(sol) polarization free energy of solvation -80.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds