Wall clock time and date at job start Tue Mar 31 2020 17:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99780 * 2 1 4 4 C 1.50707 * 109.46985 * 179.97438 * 3 2 1 5 5 C 1.38351 * 120.34909 * 270.02341 * 4 3 2 6 6 N 1.31927 * 121.07834 * 179.97438 * 5 4 3 7 7 C 1.31699 * 121.87832 * 359.76910 * 6 5 4 8 8 C 1.39513 * 120.56721 * 0.49053 * 7 6 5 9 9 C 1.47843 * 120.55882 * 179.77487 * 8 7 6 10 10 O 1.21553 * 120.00144 * 179.72826 * 9 8 7 11 11 N 1.34777 * 119.99829 * 359.72447 * 9 8 7 12 12 C 1.46502 * 119.99997 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49726 * 34.92972 * 12 11 9 14 14 C 1.53191 * 109.49482 * 274.83653 * 12 11 9 15 15 N 1.46928 * 108.77452 * 294.68181 * 14 12 11 16 16 C 1.36942 * 120.63079 * 126.36876 * 15 14 12 17 17 H 1.07993 * 120.00428 * 207.68649 * 16 15 14 18 18 C 1.38816 * 119.99711 * 27.68302 * 16 15 14 19 19 N 1.31618 * 120.00302 * 17.37489 * 18 16 15 20 20 Si 1.86804 * 119.99860 * 197.37001 * 18 16 15 21 21 H 1.48502 * 109.47075 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47121 * 119.99996 * 20 18 16 23 23 H 1.48499 * 109.47214 * 240.00130 * 20 18 16 24 24 C 1.46919 * 118.74239 * 306.39305 * 15 14 12 25 25 C 1.53196 * 108.77243 * 53.60431 * 24 15 14 26 26 C 1.53036 * 109.49926 * 154.99791 * 12 11 9 27 27 H 1.08998 * 109.45824 * 178.58932 * 26 12 11 28 28 C 1.52996 * 109.46085 * 298.56235 * 26 12 11 29 29 C 1.38358 * 120.34760 * 89.99770 * 4 3 2 30 30 H 1.09000 * 109.46618 * 60.00441 * 1 2 3 31 31 H 1.08998 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47059 * 300.00667 * 1 2 3 33 33 H 1.09003 * 109.47949 * 59.99627 * 3 2 1 34 34 H 1.09004 * 109.47410 * 299.99076 * 3 2 1 35 35 H 1.07998 * 119.45890 * 359.97438 * 5 4 3 36 36 H 1.08002 * 119.71322 * 180.24530 * 7 6 5 37 37 H 0.97000 * 120.00160 * 359.97438 * 11 9 8 38 38 H 1.09005 * 109.58861 * 54.46969 * 14 12 11 39 39 H 1.08997 * 109.58708 * 174.89322 * 14 12 11 40 40 H 0.97003 * 120.00335 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.59402 * 173.39723 * 24 15 14 42 42 H 1.09003 * 109.58765 * 293.68111 * 24 15 14 43 43 H 1.09005 * 109.49453 * 185.41539 * 25 24 15 44 44 H 1.09000 * 109.49399 * 65.32528 * 25 24 15 45 45 H 1.09007 * 109.47034 * 60.00019 * 28 26 12 46 46 H 1.08998 * 109.47207 * 300.00399 * 28 26 12 47 47 H 1.08996 * 109.47487 * 180.02562 * 28 26 12 48 48 H 1.08002 * 120.85582 * 0.04347 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2089 1.1310 1.1949 6 7 5.5239 1.0263 1.2122 7 6 6.2315 0.9655 0.1031 8 6 5.6049 1.0208 -1.1422 9 6 6.3998 0.9575 -2.3871 10 8 5.8430 1.0015 -3.4667 11 7 7.7419 0.8511 -2.3250 12 6 8.5297 0.7889 -3.5586 13 1 8.0647 1.4162 -4.3192 14 6 8.5887 -0.6591 -4.0551 15 7 9.3323 -1.4645 -3.0768 16 6 8.7848 -2.6044 -2.5513 17 1 9.0784 -2.9409 -1.5680 18 6 7.8525 -3.3275 -3.2826 19 7 7.7417 -3.1359 -4.5800 20 14 6.7551 -4.5726 -2.4253 21 1 7.0748 -4.5988 -0.9753 22 1 5.3324 -4.1893 -2.6111 23 1 6.9851 -5.9191 -3.0078 24 6 10.6742 -1.0234 -2.6725 25 6 10.5917 0.4287 -2.1915 26 6 9.9500 1.2879 -3.2833 27 1 10.5426 1.2179 -4.1955 28 6 9.8975 2.7452 -2.8202 29 6 4.2099 1.1310 -1.1931 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8465 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.6671 1.1741 2.1281 36 1 7.3064 0.8761 0.1581 37 1 8.1863 0.8164 -1.4635 38 1 7.5770 -1.0516 -4.1581 39 1 9.0965 -0.6945 -5.0189 40 1 7.0899 -3.6409 -5.0910 41 1 11.0386 -1.6563 -1.8633 42 1 11.3527 -1.0909 -3.5229 43 1 11.5947 0.7992 -1.9795 44 1 9.9862 0.4784 -1.2865 45 1 9.3045 2.8155 -1.9083 46 1 9.4416 3.3575 -3.5982 47 1 10.9091 3.1009 -2.6246 48 1 3.6918 1.1725 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966843558.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:36 Heat of formation + Delta-G solvation = -24.015436 kcal Electronic energy + Delta-G solvation = -29807.744856 eV Core-core repulsion = 25863.394308 eV Total energy + Delta-G solvation = -3944.350548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.62172 -39.30234 -37.95361 -37.40693 -34.18258 -33.25428 -32.81254 -31.88225 -30.99054 -29.13787 -27.66232 -27.30586 -25.72651 -24.62816 -23.89629 -22.69498 -22.13872 -21.09888 -20.39278 -18.74176 -17.80825 -17.04747 -16.66914 -16.62469 -16.52259 -15.61807 -15.43331 -14.96910 -14.89591 -14.47148 -14.03606 -13.84004 -13.67790 -13.52857 -13.28830 -13.16759 -13.03193 -12.85292 -12.65966 -12.58413 -12.06895 -11.93540 -11.66675 -11.58980 -11.39576 -11.11030 -10.90326 -10.70863 -10.50879 -10.19471 -10.01751 -9.95918 -9.89730 -9.83093 -9.66014 -9.50270 -9.25923 -9.15950 -8.44683 -8.39208 -6.63966 -5.75254 -3.17796 0.68141 1.10823 3.09366 3.40842 3.49563 3.49794 3.50407 3.73500 4.06147 4.27136 4.52895 4.59146 4.67451 4.83829 4.87454 4.99940 5.09452 5.13585 5.16945 5.19837 5.23236 5.33893 5.42016 5.44361 5.45763 5.52315 5.56778 5.86507 5.91789 5.98538 6.03238 6.08469 6.14092 6.27698 6.34984 6.43504 6.48105 6.53412 6.63728 6.74964 6.86734 6.86990 6.97680 7.35741 7.67837 7.79123 7.83186 8.02257 8.48157 8.68863 9.23454 9.87707 10.42720 11.32634 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010096 B = 0.004449 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.782464 B = 6291.893429 C = 7909.299145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.110 3.890 4 C -0.156 4.156 5 C 0.135 3.865 6 N -0.488 5.488 7 C 0.142 3.858 8 C -0.173 4.173 9 C 0.561 3.439 10 O -0.539 6.539 11 N -0.689 5.689 12 C 0.126 3.874 13 H 0.078 0.922 14 C 0.160 3.840 15 N -0.587 5.587 16 C -0.254 4.254 17 H 0.064 0.936 18 C 0.008 3.992 19 N -0.897 5.897 20 Si 0.893 3.107 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.290 1.290 24 C 0.142 3.858 25 C -0.129 4.129 26 C -0.094 4.094 27 H 0.079 0.921 28 C -0.145 4.145 29 C 0.001 3.999 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.394 0.606 38 H 0.098 0.902 39 H 0.026 0.974 40 H 0.253 0.747 41 H 0.054 0.946 42 H 0.018 0.982 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.507 13.497 9.336 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.033 3.967 4 C -0.159 4.159 5 C -0.022 4.022 6 N -0.195 5.195 7 C -0.016 4.016 8 C -0.178 4.178 9 C 0.346 3.654 10 O -0.418 6.418 11 N -0.340 5.340 12 C 0.020 3.980 13 H 0.096 0.904 14 C 0.033 3.967 15 N -0.310 5.310 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.191 4.191 19 N -0.541 5.541 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.217 1.217 24 C 0.015 3.985 25 C -0.169 4.169 26 C -0.113 4.113 27 H 0.097 0.903 28 C -0.202 4.202 29 C -0.025 4.025 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.230 0.770 38 H 0.116 0.884 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.420 13.218 9.236 17.356 hybrid contribution -1.034 -0.605 -0.047 1.199 sum -7.454 12.613 9.189 17.294 Atomic orbital electron populations 1.22774 0.80770 1.03063 0.99969 1.88026 1.19779 1.27079 1.95394 1.21211 0.88747 0.85427 1.01338 1.20526 0.95714 1.05302 0.94309 1.22810 0.90022 0.92029 0.97349 1.67734 1.07798 1.13025 1.30974 1.23029 1.00359 0.91388 0.86865 1.21162 0.95141 1.06087 0.95455 1.17818 0.82501 0.77172 0.87924 1.90757 1.70879 1.50747 1.29398 1.45738 1.05508 1.72487 1.10232 1.21849 0.89318 1.01057 0.85755 0.90432 1.21211 0.99813 0.85544 0.90130 1.43990 1.11742 1.25343 1.49919 1.19119 1.20941 1.00634 0.97628 0.91782 1.24976 1.01509 0.97789 0.94801 1.70005 1.36244 1.43187 1.04653 0.86374 0.81100 0.81079 0.79169 1.20260 1.21503 1.21682 1.20935 0.88384 0.91897 0.97254 1.22087 0.99081 0.98093 0.97595 1.21320 0.96155 0.94070 0.99790 0.90289 1.21854 1.00948 0.96345 1.01051 1.21626 0.92632 0.89455 0.98802 0.93877 0.89427 0.93991 0.91912 0.91937 0.82455 0.82312 0.77010 0.88438 0.95584 0.93657 0.92781 0.96385 0.92659 0.92820 0.93097 0.93073 0.93069 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.72 10.69 -35.23 -0.38 -5.09 16 3 C 0.11 1.11 6.08 36.01 0.22 1.33 16 4 C -0.16 -1.99 5.52 -104.53 -0.58 -2.57 16 5 C 0.14 1.69 10.85 -17.47 -0.19 1.50 16 6 N -0.49 -7.00 10.35 -12.91 -0.13 -7.13 16 7 C 0.14 2.09 10.71 -17.13 -0.18 1.90 16 8 C -0.17 -2.84 5.89 -104.82 -0.62 -3.45 16 9 C 0.56 10.67 7.75 -12.33 -0.10 10.58 16 10 O -0.54 -12.06 16.08 5.32 0.09 -11.97 16 11 N -0.69 -12.12 4.21 -54.63 -0.23 -12.35 16 12 C 0.13 2.34 2.24 -67.81 -0.15 2.19 16 13 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 14 C 0.16 3.79 4.91 -3.71 -0.02 3.77 16 15 N -0.59 -14.08 2.91 -172.32 -0.50 -14.58 16 16 C -0.25 -6.87 9.59 -15.06 -0.14 -7.01 16 17 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 18 C 0.01 0.24 4.91 -17.43 -0.09 0.15 16 19 N -0.90 -26.65 11.19 55.49 0.62 -26.03 16 20 Si 0.89 22.61 29.59 -169.99 -5.03 17.58 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 C 0.14 2.78 6.52 -3.71 -0.02 2.75 16 25 C -0.13 -1.98 5.20 -26.61 -0.14 -2.12 16 26 C -0.09 -1.43 2.48 -90.58 -0.22 -1.66 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 C -0.14 -1.80 9.05 37.16 0.34 -1.46 16 29 C 0.00 0.02 9.39 -38.87 -0.37 -0.34 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.16 2.05 6.42 -52.49 -0.34 1.71 16 37 H 0.39 6.16 4.71 -40.82 -0.19 5.97 16 38 H 0.10 2.75 6.04 -51.93 -0.31 2.44 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.80 6.40 -51.93 -0.33 0.47 16 45 H 0.05 0.61 7.54 -51.93 -0.39 0.22 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.15 2.21 7.74 -52.49 -0.41 1.80 16 LS Contribution 386.50 15.07 5.82 5.82 Total: -1.00 -33.57 386.50 -8.28 -41.86 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.40 Total: 4.98 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.15 Total: 6.92 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.24 Total: -60.09 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.29 Total: -17.06 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.57 -8.28 -41.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966843558.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.841 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds