Wall clock time and date at job start Tue Mar 31 2020 17:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99780 * 2 1 4 4 C 1.50707 * 109.46985 * 179.97438 * 3 2 1 5 5 C 1.38351 * 120.34909 * 270.02341 * 4 3 2 6 6 N 1.31927 * 121.07834 * 179.97438 * 5 4 3 7 7 C 1.31699 * 121.87832 * 359.76910 * 6 5 4 8 8 C 1.39513 * 120.56721 * 0.49053 * 7 6 5 9 9 C 1.47843 * 120.55882 * 179.77487 * 8 7 6 10 10 O 1.21553 * 120.00144 * 179.72826 * 9 8 7 11 11 N 1.34777 * 119.99829 * 359.72447 * 9 8 7 12 12 C 1.46502 * 119.99997 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49726 * 34.92972 * 12 11 9 14 14 C 1.53191 * 109.49482 * 274.83653 * 12 11 9 15 15 N 1.46928 * 108.77452 * 294.68181 * 14 12 11 16 16 C 1.36942 * 120.63079 * 126.36876 * 15 14 12 17 17 H 1.07993 * 120.00428 * 207.68649 * 16 15 14 18 18 C 1.38816 * 119.99711 * 27.68302 * 16 15 14 19 19 N 1.31618 * 120.00302 * 17.37489 * 18 16 15 20 20 Si 1.86804 * 119.99860 * 197.37001 * 18 16 15 21 21 H 1.48502 * 109.47075 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47121 * 119.99996 * 20 18 16 23 23 H 1.48499 * 109.47214 * 240.00130 * 20 18 16 24 24 C 1.46919 * 118.74239 * 306.39305 * 15 14 12 25 25 C 1.53196 * 108.77243 * 53.60431 * 24 15 14 26 26 C 1.53036 * 109.49926 * 154.99791 * 12 11 9 27 27 H 1.08998 * 109.45824 * 178.58932 * 26 12 11 28 28 C 1.52996 * 109.46085 * 298.56235 * 26 12 11 29 29 C 1.38358 * 120.34760 * 89.99770 * 4 3 2 30 30 H 1.09000 * 109.46618 * 60.00441 * 1 2 3 31 31 H 1.08998 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47059 * 300.00667 * 1 2 3 33 33 H 1.09003 * 109.47949 * 59.99627 * 3 2 1 34 34 H 1.09004 * 109.47410 * 299.99076 * 3 2 1 35 35 H 1.07998 * 119.45890 * 359.97438 * 5 4 3 36 36 H 1.08002 * 119.71322 * 180.24530 * 7 6 5 37 37 H 0.97000 * 120.00160 * 359.97438 * 11 9 8 38 38 H 1.09005 * 109.58861 * 54.46969 * 14 12 11 39 39 H 1.08997 * 109.58708 * 174.89322 * 14 12 11 40 40 H 0.97003 * 120.00335 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.59402 * 173.39723 * 24 15 14 42 42 H 1.09003 * 109.58765 * 293.68111 * 24 15 14 43 43 H 1.09005 * 109.49453 * 185.41539 * 25 24 15 44 44 H 1.09000 * 109.49399 * 65.32528 * 25 24 15 45 45 H 1.09007 * 109.47034 * 60.00019 * 28 26 12 46 46 H 1.08998 * 109.47207 * 300.00399 * 28 26 12 47 47 H 1.08996 * 109.47487 * 180.02562 * 28 26 12 48 48 H 1.08002 * 120.85582 * 0.04347 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2089 1.1310 1.1949 6 7 5.5239 1.0263 1.2122 7 6 6.2315 0.9655 0.1031 8 6 5.6049 1.0208 -1.1422 9 6 6.3998 0.9575 -2.3871 10 8 5.8430 1.0015 -3.4667 11 7 7.7419 0.8511 -2.3250 12 6 8.5297 0.7889 -3.5586 13 1 8.0647 1.4162 -4.3192 14 6 8.5887 -0.6591 -4.0551 15 7 9.3323 -1.4645 -3.0768 16 6 8.7848 -2.6044 -2.5513 17 1 9.0784 -2.9409 -1.5680 18 6 7.8525 -3.3275 -3.2826 19 7 7.7417 -3.1359 -4.5800 20 14 6.7551 -4.5726 -2.4253 21 1 7.0748 -4.5988 -0.9753 22 1 5.3324 -4.1893 -2.6111 23 1 6.9851 -5.9191 -3.0078 24 6 10.6742 -1.0234 -2.6725 25 6 10.5917 0.4287 -2.1915 26 6 9.9500 1.2879 -3.2833 27 1 10.5426 1.2179 -4.1955 28 6 9.8975 2.7452 -2.8202 29 6 4.2099 1.1310 -1.1931 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8465 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.6671 1.1741 2.1281 36 1 7.3064 0.8761 0.1581 37 1 8.1863 0.8164 -1.4635 38 1 7.5770 -1.0516 -4.1581 39 1 9.0965 -0.6945 -5.0189 40 1 7.0899 -3.6409 -5.0910 41 1 11.0386 -1.6563 -1.8633 42 1 11.3527 -1.0909 -3.5229 43 1 11.5947 0.7992 -1.9795 44 1 9.9862 0.4784 -1.2865 45 1 9.3045 2.8155 -1.9083 46 1 9.4416 3.3575 -3.5982 47 1 10.9091 3.1009 -2.6246 48 1 3.6918 1.1725 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966843558.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:35 Heat of formation + Delta-G solvation = -46.819403 kcal Electronic energy + Delta-G solvation = -29808.733711 eV Core-core repulsion = 25863.394308 eV Total energy + Delta-G solvation = -3945.339403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83865 -40.67319 -39.06232 -38.67036 -35.97369 -34.58583 -34.02692 -33.17326 -32.73614 -30.70009 -28.93978 -28.42020 -26.52900 -26.14104 -25.42465 -23.81950 -23.62323 -22.73915 -21.68788 -20.33932 -19.05204 -18.71205 -17.91884 -17.69100 -17.41222 -16.91348 -16.61610 -16.45629 -16.13227 -15.98896 -15.69865 -15.38862 -14.96629 -14.94492 -14.75704 -14.40591 -14.24869 -14.11044 -13.98401 -13.58484 -13.36264 -13.16856 -13.00406 -12.91403 -12.76889 -12.63990 -12.49340 -12.38557 -12.21915 -11.95479 -11.55898 -11.39658 -11.19855 -11.06871 -10.99085 -10.74180 -10.58127 -10.49267 -10.29010 -9.95533 -8.65702 -7.88426 -5.31885 -0.44968 -0.00419 1.35329 1.40437 1.47047 1.79609 2.18013 2.45656 2.62907 3.06942 3.24757 3.27844 3.63178 3.68260 3.71343 3.75189 3.83146 3.88440 4.00060 4.03021 4.13594 4.28289 4.46971 4.51943 4.52264 4.53509 4.60961 4.68396 4.71915 4.81561 4.86551 4.89663 4.92010 4.97327 5.05641 5.10044 5.18676 5.25461 5.27444 5.43156 5.47650 5.51794 5.59524 5.69202 5.71505 6.16837 6.37959 6.56761 6.71555 7.13469 7.23669 7.87278 8.37049 9.16514 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010096 B = 0.004449 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.782464 B = 6291.893429 C = 7909.299145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.108 3.892 4 C -0.152 4.152 5 C 0.142 3.858 6 N -0.497 5.497 7 C 0.144 3.856 8 C -0.197 4.197 9 C 0.556 3.444 10 O -0.585 6.585 11 N -0.679 5.679 12 C 0.137 3.863 13 H 0.067 0.933 14 C 0.170 3.830 15 N -0.600 5.600 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.048 4.048 19 N -0.932 5.932 20 Si 0.945 3.055 21 H -0.261 1.261 22 H -0.305 1.305 23 H -0.289 1.289 24 C 0.135 3.865 25 C -0.117 4.117 26 C -0.087 4.087 27 H 0.079 0.921 28 C -0.136 4.136 29 C -0.013 4.013 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.196 0.804 36 H 0.175 0.825 37 H 0.405 0.595 38 H 0.047 0.953 39 H -0.001 1.001 40 H 0.244 0.756 41 H 0.057 0.943 42 H 0.014 0.986 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.077 0.923 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 15.268 12.749 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C 0.032 3.968 4 C -0.154 4.154 5 C -0.014 4.014 6 N -0.205 5.205 7 C -0.014 4.014 8 C -0.202 4.202 9 C 0.343 3.657 10 O -0.466 6.466 11 N -0.329 5.329 12 C 0.030 3.970 13 H 0.085 0.915 14 C 0.043 3.957 15 N -0.323 5.323 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.243 4.243 19 N -0.579 5.579 20 Si 0.775 3.225 21 H -0.185 1.185 22 H -0.233 1.233 23 H -0.216 1.216 24 C 0.010 3.990 25 C -0.156 4.156 26 C -0.106 4.106 27 H 0.097 0.903 28 C -0.193 4.193 29 C -0.040 4.040 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.213 0.787 36 H 0.192 0.808 37 H 0.244 0.756 38 H 0.066 0.934 39 H 0.017 0.983 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.032 0.968 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.096 0.904 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.987 15.008 12.707 20.555 hybrid contribution -1.177 -1.156 -1.085 1.975 sum -7.164 13.851 11.622 19.449 Atomic orbital electron populations 1.22953 0.78907 1.03716 1.01475 1.87960 1.21934 1.28304 1.95728 1.21362 0.86769 0.85162 1.03507 1.20821 0.97385 1.03856 0.93339 1.23463 0.89574 0.89743 0.98656 1.67832 1.08770 1.13497 1.30386 1.23201 1.01169 0.90781 0.86228 1.21009 0.95499 1.08872 0.94796 1.18332 0.82919 0.76076 0.88394 1.90725 1.71723 1.52867 1.31322 1.45616 1.05186 1.71805 1.10335 1.21548 0.92058 0.97245 0.86110 0.91526 1.20886 0.96621 0.88586 0.89615 1.44185 1.13742 1.24781 1.49633 1.19456 1.19940 1.00672 0.97521 0.91180 1.25615 1.03394 1.00048 0.95254 1.70161 1.37082 1.44670 1.05981 0.85525 0.78591 0.79264 0.79143 1.18536 1.23318 1.21626 1.21166 0.85760 0.94887 0.97189 1.21977 1.01485 0.94684 0.97430 1.21282 0.93060 0.96137 1.00143 0.90294 1.21770 1.02764 0.93631 1.01132 1.21737 0.92517 0.90112 0.99642 0.93140 0.89329 0.91672 0.88357 0.91157 0.78694 0.80805 0.75628 0.93431 0.98262 0.94651 0.92413 0.96754 0.88835 0.91935 0.92512 0.93131 0.90401 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.60 10.69 -148.98 -1.59 -11.19 16 3 C 0.11 1.94 6.08 71.24 0.43 2.37 16 4 C -0.15 -3.62 5.52 -19.81 -0.11 -3.73 16 5 C 0.14 3.14 10.85 84.71 0.92 4.06 16 6 N -0.50 -13.07 10.35 -194.76 -2.01 -15.09 16 7 C 0.14 4.05 10.71 85.02 0.91 4.96 16 8 C -0.20 -6.48 5.89 -19.99 -0.12 -6.60 16 9 C 0.56 21.87 7.75 86.79 0.67 22.55 16 10 O -0.58 -27.79 16.08 -3.88 -0.06 -27.86 16 11 N -0.68 -23.92 4.21 -445.04 -1.87 -25.79 16 12 C 0.14 5.16 2.24 45.07 0.10 5.26 16 13 H 0.07 2.67 7.58 -2.39 -0.02 2.65 16 14 C 0.17 8.44 4.91 86.36 0.42 8.86 16 15 N -0.60 -29.11 2.91 -699.10 -2.04 -31.15 16 16 C -0.25 -13.42 9.59 84.03 0.81 -12.62 16 17 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 18 C -0.05 -2.77 4.91 84.86 0.42 -2.36 16 19 N -0.93 -58.26 11.19 21.65 0.24 -58.02 16 20 Si 0.95 47.71 29.59 68.60 2.03 49.74 16 21 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.31 -16.12 7.11 99.48 0.71 -15.41 16 23 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 24 C 0.13 5.10 6.52 86.37 0.56 5.66 16 25 C -0.12 -3.21 5.20 30.67 0.16 -3.05 16 26 C -0.09 -2.48 2.48 -10.77 -0.03 -2.50 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 C -0.14 -2.91 9.05 71.98 0.65 -2.26 16 29 C -0.01 -0.41 9.39 22.73 0.21 -0.20 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 1.06 8.09 -2.39 -0.02 1.04 16 34 H 0.07 1.13 8.09 -2.38 -0.02 1.11 16 35 H 0.20 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.18 4.14 6.42 -2.91 -0.02 4.12 16 37 H 0.41 12.12 4.71 -92.71 -0.44 11.68 16 38 H 0.05 2.85 6.04 -2.38 -0.01 2.84 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.06 1.64 6.40 -2.39 -0.02 1.62 16 45 H 0.06 1.17 7.54 -2.38 -0.02 1.15 16 46 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.14 4.33 7.74 -2.91 -0.02 4.31 16 Total: -1.00 -77.68 386.50 2.49 -75.19 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.53 Total: 22.13 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 7.26 Total: 22.02 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -5.68 Total: -130.04 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.65 Total: -39.04 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -77.68 2.49 -75.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966843558.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.372 kcal (2) G-P(sol) polarization free energy of solvation -77.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds