Wall clock time and date at job start Tue Mar 31 2020 17:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35739 * 117.00289 * 2 1 4 4 C 1.39279 * 120.84342 * 359.97438 * 3 2 1 5 5 C 1.37949 * 119.09138 * 180.02562 * 4 3 2 6 6 N 1.31983 * 120.82622 * 0.02562 * 5 4 3 7 7 C 1.31955 * 121.85857 * 0.02562 * 6 5 4 8 8 C 1.37997 * 120.82082 * 359.71711 * 7 6 5 9 9 C 1.50693 * 120.45217 * 180.31073 * 8 7 6 10 10 C 1.50698 * 109.46889 * 265.24917 * 9 8 7 11 11 O 1.21276 * 120.00559 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99795 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99777 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.50109 * 35.06140 * 13 12 10 15 15 C 1.53196 * 109.49387 * 274.99863 * 13 12 10 16 16 N 1.46930 * 108.77398 * 294.68186 * 15 13 12 17 17 C 1.36943 * 120.62900 * 126.37193 * 16 15 13 18 18 H 1.08001 * 119.99971 * 332.62658 * 17 16 15 19 19 C 1.38812 * 119.99775 * 152.62773 * 17 16 15 20 20 N 1.31621 * 119.99772 * 159.35764 * 19 17 16 21 21 Si 1.86790 * 120.00234 * 339.35958 * 19 17 16 22 22 H 1.48496 * 109.47670 * 92.90228 * 21 19 17 23 23 H 1.48501 * 109.47189 * 212.90344 * 21 19 17 24 24 H 1.48506 * 109.47113 * 332.89969 * 21 19 17 25 25 C 1.46921 * 118.73886 * 306.39249 * 16 15 13 26 26 C 1.53190 * 108.77473 * 53.61289 * 25 16 15 27 27 C 1.53036 * 109.49700 * 155.16343 * 13 12 10 28 28 H 1.09005 * 109.46118 * 178.60545 * 27 13 12 29 29 C 1.53003 * 109.46010 * 298.55939 * 27 13 12 30 30 H 1.08999 * 109.47175 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46820 * 59.99958 * 1 2 3 32 32 H 1.09000 * 109.46679 * 299.99956 * 1 2 3 33 33 H 1.07999 * 120.46155 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.59382 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.58357 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47319 * 25.24532 * 9 8 7 37 37 H 1.08997 * 109.47618 * 145.24709 * 9 8 7 38 38 H 0.96997 * 120.00018 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.58717 * 54.47199 * 15 13 12 40 40 H 1.08993 * 109.58444 * 174.89889 * 15 13 12 41 41 H 0.96994 * 119.99917 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.58265 * 173.39558 * 25 16 15 43 43 H 1.08998 * 109.59103 * 293.67887 * 25 16 15 44 44 H 1.08996 * 109.50599 * 65.31548 * 26 25 16 45 45 H 1.09005 * 109.49788 * 185.38352 * 26 25 16 46 46 H 1.09006 * 109.46819 * 59.99739 * 29 27 13 47 47 H 1.08990 * 109.47479 * 180.02562 * 29 27 13 48 48 H 1.08999 * 109.47178 * 300.00827 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3886 -0.0005 5 6 1.9677 3.5980 -0.0011 6 7 3.2867 3.6457 -0.0016 7 6 4.0232 2.5508 -0.0021 8 6 3.4346 1.3027 0.0037 9 6 4.2838 0.0578 0.0101 10 6 4.4702 -0.4303 -1.4034 11 8 3.9631 0.1730 -2.3252 12 7 5.1997 -1.5380 -1.6431 13 6 5.3814 -2.0122 -3.0174 14 1 5.4473 -1.1580 -3.6913 15 6 4.1903 -2.8885 -3.4175 16 7 4.1925 -4.0986 -2.5841 17 6 3.0786 -4.4582 -1.8733 18 1 2.3771 -3.7032 -1.5502 19 6 2.8511 -5.7931 -1.5679 20 7 2.0471 -6.1136 -0.5763 21 14 3.6860 -7.1345 -2.5642 22 1 4.9588 -7.5217 -1.9045 23 1 2.7923 -8.3174 -2.6486 24 1 3.9707 -6.6307 -3.9319 25 6 5.4125 -4.9152 -2.5274 26 6 6.5899 -4.0161 -2.1372 27 6 6.6684 -2.8354 -3.1077 28 1 6.7901 -3.2086 -4.1246 29 6 7.8642 -1.9537 -2.7421 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 0.2246 2.3567 -0.0014 34 1 1.4010 4.5173 -0.0011 35 1 5.1001 2.6326 -0.0029 36 1 5.2562 0.2835 0.4477 37 1 3.7908 -0.7153 0.5994 38 1 5.6051 -2.0207 -0.9059 39 1 3.2627 -2.3382 -3.2603 40 1 4.2785 -3.1678 -4.4673 41 1 1.8879 -7.0463 -0.3632 42 1 5.2913 -5.7021 -1.7829 43 1 5.5991 -5.3617 -3.5041 44 1 6.4435 -3.6444 -1.1231 45 1 7.5162 -4.5887 -2.1846 46 1 7.7425 -1.5797 -1.7254 47 1 8.7809 -2.5396 -2.8068 48 1 7.9209 -1.1133 -3.4339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966904815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:51 Heat of formation + Delta-G solvation = -15.109554 kcal Electronic energy + Delta-G solvation = -30153.661316 eV Core-core repulsion = 26209.696956 eV Total energy + Delta-G solvation = -3943.964360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.77207 -39.63134 -38.13598 -37.72092 -34.35871 -33.25140 -32.73803 -31.40360 -31.19480 -29.86025 -28.09122 -27.54650 -27.12925 -23.92239 -23.03066 -22.88404 -22.36015 -21.29099 -20.34206 -18.83294 -18.30660 -17.13832 -17.06578 -16.55250 -15.78996 -15.68858 -15.26504 -15.01436 -14.91948 -14.67542 -14.17250 -14.08584 -13.79571 -13.69060 -13.53004 -13.46472 -13.30726 -13.02337 -12.51006 -12.29915 -12.22450 -11.94667 -11.84327 -11.56012 -11.52264 -11.44057 -11.23128 -11.14049 -10.67419 -10.60016 -10.21935 -9.89477 -9.70962 -9.58724 -9.48787 -9.41082 -9.09831 -8.80075 -8.63153 -8.39656 -6.93116 -5.94243 -3.28952 1.08076 1.39912 3.10430 3.19968 3.30099 3.47995 3.50688 3.58335 3.94425 4.41025 4.52929 4.62897 4.77705 4.91312 4.96850 4.99948 5.10605 5.13829 5.17130 5.20522 5.22778 5.34655 5.37847 5.43573 5.58482 5.60487 5.73582 5.74937 5.76764 5.87122 5.97486 6.00315 6.08219 6.11033 6.13278 6.24657 6.34609 6.40327 6.55065 6.55500 6.62130 6.71985 6.80485 7.06405 7.24833 7.96381 8.00077 8.01991 8.34440 8.70970 8.96055 9.73640 10.10870 11.21899 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.004138 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.823003 B = 6765.006616 C = 8413.186869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.296 6.296 3 C 0.187 3.813 4 C -0.264 4.264 5 C 0.129 3.871 6 N -0.512 5.512 7 C 0.141 3.859 8 C -0.143 4.143 9 C -0.092 4.092 10 C 0.521 3.479 11 O -0.547 6.547 12 N -0.702 5.702 13 C 0.136 3.864 14 H 0.080 0.920 15 C 0.138 3.862 16 N -0.601 5.601 17 C -0.250 4.250 18 H 0.084 0.916 19 C 0.022 3.978 20 N -0.910 5.910 21 Si 0.882 3.118 22 H -0.290 1.290 23 H -0.305 1.305 24 H -0.272 1.272 25 C 0.123 3.877 26 C -0.129 4.129 27 C -0.094 4.094 28 H 0.077 0.923 29 C -0.143 4.143 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.137 0.863 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.399 0.601 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.261 0.739 42 H 0.073 0.927 43 H 0.024 0.976 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.179 13.789 2.132 14.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.206 6.206 3 C 0.132 3.868 4 C -0.285 4.285 5 C -0.027 4.027 6 N -0.224 5.224 7 C -0.015 4.015 8 C -0.146 4.146 9 C -0.132 4.132 10 C 0.307 3.693 11 O -0.425 6.425 12 N -0.353 5.353 13 C 0.030 3.970 14 H 0.098 0.902 15 C 0.011 3.989 16 N -0.324 5.324 17 C -0.378 4.378 18 H 0.102 0.898 19 C -0.176 4.176 20 N -0.553 5.553 21 Si 0.713 3.287 22 H -0.218 1.218 23 H -0.234 1.234 24 H -0.197 1.197 25 C -0.003 4.003 26 C -0.169 4.169 27 C -0.114 4.114 28 H 0.096 0.904 29 C -0.201 4.201 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.155 0.845 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.234 0.766 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.042 0.958 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.171 14.656 1.550 15.619 hybrid contribution -0.215 -2.002 -0.190 2.022 sum 4.956 12.654 1.360 13.658 Atomic orbital electron populations 1.23164 0.77643 1.04953 1.01007 1.86189 1.21943 1.25614 1.86835 1.19186 0.91963 0.84952 0.90658 1.22170 1.01452 0.93207 1.11707 1.22460 0.90340 0.96786 0.93129 1.67699 1.07089 1.31896 1.15732 1.22432 0.99985 0.86209 0.92863 1.19730 0.90947 0.96352 1.07620 1.20407 1.00575 0.96118 0.96151 1.20248 0.78066 0.80393 0.90563 1.90663 1.48192 1.57713 1.45904 1.45832 1.52967 1.27072 1.09429 1.21462 0.95783 0.96446 0.83332 0.90199 1.21324 0.96702 0.87919 0.92982 1.44305 1.09623 1.25764 1.52750 1.18895 1.00334 0.92235 1.26368 0.89841 1.25260 0.97401 0.96959 0.97981 1.69834 1.40067 1.17589 1.27818 0.86977 0.77590 0.82071 0.82104 1.21802 1.23369 1.19704 1.21360 0.86241 0.93874 0.98793 1.22077 0.99051 0.96810 0.98940 1.21315 0.93793 0.95765 1.00479 0.90428 1.21826 0.97482 0.99305 1.01448 0.87333 0.92485 0.92657 0.84508 0.82841 0.82541 0.88223 0.87240 0.76565 0.91383 0.95380 0.92926 0.90929 0.95774 0.91985 0.92459 0.92785 0.92964 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.84 101.05 0.99 1.31 16 2 O -0.30 -4.68 9.77 -18.92 -0.18 -4.87 16 3 C 0.19 2.77 6.70 -38.82 -0.26 2.51 16 4 C -0.26 -3.26 9.11 -39.30 -0.36 -3.62 16 5 C 0.13 1.55 11.17 -17.59 -0.20 1.35 16 6 N -0.51 -7.01 10.36 -13.33 -0.14 -7.15 16 7 C 0.14 1.86 10.84 -17.59 -0.19 1.67 16 8 C -0.14 -2.05 4.40 -104.34 -0.46 -2.51 16 9 C -0.09 -1.24 5.61 -29.04 -0.16 -1.41 16 10 C 0.52 8.68 7.79 -10.98 -0.09 8.60 16 11 O -0.55 -11.01 15.70 5.56 0.09 -10.92 16 12 N -0.70 -11.07 4.25 -53.69 -0.23 -11.30 16 13 C 0.14 2.24 2.24 -67.81 -0.15 2.08 16 14 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 15 C 0.14 2.79 6.12 -3.71 -0.02 2.76 16 16 N -0.60 -13.71 2.69 -172.32 -0.46 -14.18 16 17 C -0.25 -6.81 10.04 -15.06 -0.15 -6.96 16 18 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 20 N -0.91 -27.32 13.97 55.49 0.78 -26.55 16 21 Si 0.88 22.07 24.34 -169.99 -4.14 17.93 16 22 H -0.29 -6.97 6.62 56.52 0.37 -6.59 16 23 H -0.31 -7.87 7.11 56.52 0.40 -7.47 16 24 H -0.27 -6.74 6.64 56.52 0.38 -6.36 16 25 C 0.12 2.53 4.21 -3.71 -0.02 2.51 16 26 C -0.13 -2.04 5.20 -26.61 -0.14 -2.18 16 27 C -0.09 -1.34 2.48 -90.58 -0.22 -1.56 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 C -0.14 -1.65 9.05 37.16 0.34 -1.31 16 30 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.61 7.71 -51.93 -0.40 0.21 16 32 H 0.05 0.51 7.71 -51.93 -0.40 0.11 16 33 H 0.14 1.32 6.47 -52.49 -0.34 0.98 16 34 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.10 0.98 8.06 -51.93 -0.42 0.56 16 37 H 0.11 1.56 7.77 -51.93 -0.40 1.15 16 38 H 0.40 5.84 6.63 -40.82 -0.27 5.57 16 39 H 0.07 1.54 7.93 -51.93 -0.41 1.12 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.07 1.66 4.50 -51.93 -0.23 1.42 16 43 H 0.02 0.50 7.07 -51.93 -0.37 0.14 16 44 H 0.06 0.97 6.40 -51.93 -0.33 0.64 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 378.15 15.07 5.70 5.70 Total: -1.00 -34.13 378.15 -7.13 -41.26 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.36 Total: 6.29 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.18 Total: 3.79 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.05 Total: -59.18 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.10 Total: -15.79 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.13 -7.13 -41.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966904815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.151 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds