Wall clock time and date at job start Tue Mar 31 2020 17:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.44659 * 2 1 4 4 C 1.53040 * 109.45932 * 119.96428 * 2 1 3 5 5 C 1.53199 * 109.31140 * 181.38280 * 4 2 1 6 6 N 1.46921 * 108.77747 * 305.36995 * 5 4 2 7 7 C 1.36934 * 120.63002 * 233.58543 * 6 5 4 8 8 H 1.08007 * 120.00219 * 151.84278 * 7 6 5 9 9 C 1.38816 * 120.00026 * 331.84498 * 7 6 5 10 10 N 1.31612 * 119.99500 * 343.07801 * 9 7 6 11 11 Si 1.86794 * 120.00031 * 163.07977 * 9 7 6 12 12 H 1.48504 * 109.47187 * 59.99600 * 11 9 7 13 13 H 1.48497 * 109.47306 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47353 * 299.99978 * 11 9 7 15 15 C 1.46930 * 118.74109 * 53.60549 * 6 5 4 16 16 C 1.53035 * 109.45937 * 240.03538 * 2 1 3 17 17 H 1.09006 * 109.52666 * 298.58178 * 16 2 1 18 18 N 1.46499 * 109.50026 * 58.66207 * 16 2 1 19 19 C 1.34778 * 120.00052 * 204.84389 * 18 16 2 20 20 O 1.21576 * 120.00197 * 359.97438 * 19 18 16 21 21 C 1.47516 * 119.99997 * 180.02562 * 19 18 16 22 22 O 1.35190 * 127.15151 * 359.67028 * 21 19 18 23 23 N 1.21473 * 111.55223 * 179.77676 * 22 21 19 24 24 C 1.29072 * 111.68413 * 0.38739 * 23 22 21 25 25 C 1.35242 * 127.15670 * 180.02562 * 21 19 18 26 26 C 1.50107 * 131.33585 * 0.22671 * 25 21 19 27 27 C 1.53579 * 108.01780 * 163.74914 * 26 25 21 28 28 C 1.52998 * 109.80872 * 50.05380 * 27 26 25 29 29 C 1.50651 * 130.33682 * 180.02562 * 24 23 22 30 30 H 1.09005 * 109.47236 * 300.03546 * 1 2 3 31 31 H 1.09000 * 109.47181 * 60.03070 * 1 2 3 32 32 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49465 * 61.43667 * 4 2 1 34 34 H 1.08996 * 109.50234 * 301.33610 * 4 2 1 35 35 H 1.09000 * 109.57965 * 65.15512 * 5 4 2 36 36 H 1.08997 * 109.58740 * 185.43540 * 5 4 2 37 37 H 0.97002 * 119.99590 * 180.02562 * 10 9 7 38 38 H 1.08994 * 109.58551 * 66.18048 * 15 6 5 39 39 H 1.08996 * 109.59066 * 186.46330 * 15 6 5 40 40 H 0.97004 * 119.99808 * 24.83708 * 18 16 2 41 41 H 1.09004 * 109.75583 * 283.38086 * 26 25 21 42 42 H 1.08996 * 109.75171 * 44.12130 * 26 25 21 43 43 H 1.09001 * 109.41156 * 170.15422 * 27 26 25 44 44 H 1.08995 * 109.41164 * 289.94888 * 27 26 25 45 45 H 1.08998 * 109.38162 * 48.45616 * 28 27 26 46 46 H 1.08996 * 109.38206 * 168.12202 * 28 27 26 47 47 H 1.09003 * 109.74342 * 43.45829 * 29 24 23 48 48 H 1.09002 * 109.77821 * 282.77474 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9764 -2.2733 0.0000 8 1 5.0044 -2.9703 -0.8246 9 6 5.8615 -2.4161 1.0598 10 7 6.0658 -1.4124 1.8862 11 14 6.7624 -4.0328 1.3128 12 1 7.5863 -4.3333 0.1143 13 1 7.6426 -3.9278 2.5043 14 1 5.7752 -5.1224 1.5206 15 6 3.5714 -0.6885 -1.2643 16 6 2.0398 -0.7207 -1.2501 17 1 1.6978 -1.7556 -1.2389 18 7 1.5255 -0.0487 -2.4459 19 6 1.4000 -0.7314 -3.6012 20 8 1.7140 -1.9049 -3.6510 21 6 0.8827 -0.0545 -4.8055 22 8 0.4883 1.2342 -4.9118 23 7 0.1149 1.4951 -6.0379 24 6 0.1913 0.4678 -6.8157 25 6 0.6982 -0.5959 -6.0310 26 6 0.9381 -1.9846 -6.5478 27 6 0.1807 -2.1349 -7.8754 28 6 0.5104 -0.9586 -8.7964 29 6 -0.1574 0.3207 -8.2739 30 1 -0.3634 0.5144 0.8897 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6978 -1.7556 1.2383 34 1 1.6573 -0.2207 2.1399 35 1 3.9142 0.3410 1.3673 36 1 3.9417 -1.2824 2.0999 37 1 6.6846 -1.5121 2.6266 38 1 3.9143 0.3409 -1.3674 39 1 3.9437 -1.2829 -2.0986 40 1 1.2753 0.8877 -2.4062 41 1 2.0047 -2.1372 -6.7129 42 1 0.5680 -2.7146 -5.8279 43 1 0.4763 -3.0666 -8.3576 44 1 -0.8916 -2.1532 -7.6806 45 1 1.5905 -0.8159 -8.8284 46 1 0.1456 -1.1724 -9.8010 47 1 0.2118 1.1827 -8.8296 48 1 -1.2387 0.2444 -8.3887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967354080.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:59 Heat of formation + Delta-G solvation = 9.429099 kcal Electronic energy + Delta-G solvation = -29452.670434 eV Core-core repulsion = 25509.770149 eV Total energy + Delta-G solvation = -3942.900285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.06811 -41.18044 -39.31015 -38.67367 -36.25974 -34.66035 -33.93474 -33.40039 -33.03419 -31.22953 -30.28900 -28.95699 -26.36870 -25.84332 -24.85186 -24.23384 -23.22338 -22.68114 -21.54391 -21.02705 -20.64845 -19.11525 -18.85942 -18.72031 -17.37505 -16.92697 -16.77090 -16.16466 -16.06679 -15.77528 -15.45760 -15.25667 -15.13430 -14.97549 -14.83012 -14.53431 -14.36940 -14.13220 -13.66769 -13.59771 -13.40937 -13.21799 -13.13112 -12.85012 -12.73141 -12.67011 -12.33354 -12.05486 -11.97862 -11.91850 -11.89151 -11.69900 -11.58233 -11.49174 -11.29507 -11.18746 -10.98713 -10.67019 -10.57641 -10.20091 -8.70127 -7.90510 -5.36507 -0.32139 0.96558 1.43109 1.46072 1.47561 1.55057 1.84995 2.11185 2.50820 2.83344 3.24124 3.35469 3.63752 3.71129 3.76285 3.80766 3.93863 3.97731 4.00459 4.09229 4.28473 4.36465 4.40730 4.42861 4.49424 4.51736 4.64536 4.76249 4.84477 4.88494 4.90445 4.93927 4.96608 5.02646 5.04592 5.12652 5.13498 5.14741 5.20498 5.27992 5.37612 5.38972 5.44336 5.52825 5.63111 5.77139 6.26019 6.36749 6.88274 6.98173 7.12879 7.81597 8.32085 9.15309 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.002968 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.162561 B = 9431.900908 C =10595.078348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 H 0.080 0.920 4 C -0.121 4.121 5 C 0.171 3.829 6 N -0.605 5.605 7 C -0.269 4.269 8 H 0.056 0.944 9 C -0.043 4.043 10 N -0.930 5.930 11 Si 0.966 3.034 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.278 1.278 15 C 0.143 3.857 16 C 0.150 3.850 17 H 0.069 0.931 18 N -0.691 5.691 19 C 0.605 3.395 20 O -0.540 6.540 21 C -0.089 4.089 22 O 0.093 5.907 23 N -0.352 5.352 24 C 0.022 3.978 25 C -0.124 4.124 26 C -0.054 4.054 27 C -0.116 4.116 28 C -0.116 4.116 29 C -0.041 4.041 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.004 0.996 36 H 0.056 0.944 37 H 0.252 0.748 38 H 0.020 0.980 39 H 0.035 0.965 40 H 0.417 0.583 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.099 0.901 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.862 4.321 -17.940 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.161 4.161 5 C 0.046 3.954 6 N -0.329 5.329 7 C -0.399 4.399 8 H 0.074 0.926 9 C -0.239 4.239 10 N -0.575 5.575 11 Si 0.793 3.207 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.204 1.204 15 C 0.016 3.984 16 C 0.044 3.956 17 H 0.087 0.913 18 N -0.341 5.341 19 C 0.389 3.611 20 O -0.418 6.418 21 C -0.153 4.153 22 O 0.026 5.974 23 N -0.057 5.057 24 C -0.139 4.139 25 C -0.129 4.129 26 C -0.091 4.091 27 C -0.154 4.154 28 C -0.154 4.154 29 C -0.079 4.079 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.054 0.946 40 H 0.254 0.746 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.124 0.876 47 H 0.117 0.883 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.902 4.748 -17.957 25.113 hybrid contribution 1.204 -0.927 0.626 1.643 sum -15.699 3.821 -17.331 23.694 Atomic orbital electron populations 1.21789 0.92910 1.01923 1.02786 1.21248 0.96963 0.99444 0.92631 0.90170 1.22074 0.96592 0.99979 0.97445 1.20719 0.90704 0.95399 0.88545 1.44193 1.48238 1.39734 1.00703 1.19385 1.10321 1.03565 1.06678 0.92615 1.25737 0.98093 1.00421 0.99657 1.70160 1.38175 1.30613 1.18549 0.85375 0.78125 0.80029 0.77133 1.20414 1.21415 1.20397 1.21224 0.92569 0.95938 0.88712 1.21426 0.93952 0.96685 0.83492 0.91304 1.45819 1.64038 1.15244 1.09030 1.16641 0.77848 0.85350 0.81296 1.90871 1.50975 1.16049 1.83870 1.23320 1.08139 0.86247 0.97631 1.85224 1.61472 1.25612 1.25117 1.73402 1.16543 1.24286 0.91456 1.24019 1.01016 0.87954 1.00916 1.21493 1.00127 1.00110 0.91171 1.20223 1.01970 0.88611 0.98312 1.21686 1.00454 0.99943 0.93289 1.21651 1.01050 0.92365 1.00300 1.20393 1.02980 1.00686 0.83861 0.90788 0.91660 0.93376 0.93174 0.89821 0.97830 0.92603 0.93860 0.96254 0.94603 0.74595 0.89787 0.90255 0.88908 0.90955 0.91751 0.87569 0.88266 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.02 71.98 0.65 -2.45 16 2 C -0.08 -2.49 2.27 -10.77 -0.02 -2.51 16 3 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.12 -4.31 5.36 30.67 0.16 -4.15 16 5 C 0.17 8.15 5.30 86.37 0.46 8.61 16 6 N -0.60 -31.29 2.99 -699.09 -2.09 -33.38 16 7 C -0.27 -15.49 9.58 84.03 0.81 -14.69 16 8 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 9 C -0.04 -2.46 4.92 84.86 0.42 -2.04 16 10 N -0.93 -55.16 11.19 21.65 0.24 -54.91 16 11 Si 0.97 45.90 29.59 68.60 2.03 47.93 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 C 0.14 6.28 6.09 86.36 0.53 6.80 16 16 C 0.15 5.21 2.06 45.07 0.09 5.30 16 17 H 0.07 2.74 7.58 -2.38 -0.02 2.72 16 18 N -0.69 -19.58 4.37 -445.36 -1.94 -21.52 16 19 C 0.60 18.81 7.78 86.69 0.67 19.48 16 20 O -0.54 -20.52 15.60 -3.96 -0.06 -20.58 16 21 C -0.09 -2.40 7.28 24.03 0.17 -2.23 16 22 O 0.09 2.36 11.10 59.46 0.66 3.02 16 23 N -0.35 -8.72 12.03 -50.86 -0.61 -9.33 16 24 C 0.02 0.46 7.21 43.77 0.32 0.78 16 25 C -0.12 -2.97 6.02 -19.92 -0.12 -3.09 16 26 C -0.05 -1.09 5.59 29.86 0.17 -0.93 16 27 C -0.12 -1.44 5.87 30.79 0.18 -1.26 16 28 C -0.12 -1.14 5.84 30.75 0.18 -0.96 16 29 C -0.04 -0.51 6.32 29.99 0.19 -0.32 16 30 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.06 1.28 7.35 -2.39 -0.02 1.27 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.06 3.02 6.07 -2.39 -0.01 3.00 16 37 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.04 1.71 7.93 -2.39 -0.02 1.69 16 40 H 0.42 9.36 8.14 -92.71 -0.75 8.61 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 1.84 7.77 -2.39 -0.02 1.82 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.84 8.11 -2.39 -0.02 0.82 16 45 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 46 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -70.18 379.67 3.28 -66.90 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.21 Total: 15.53 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 4.85 Total: 6.34 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -4.41 Total: -119.15 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.60 Total: -17.56 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -70.18 3.28 -66.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967354080.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.328 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds