Wall clock time and date at job start Tue Mar 31 2020 17:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.45756 * 2 1 4 4 C 1.53039 * 109.45641 * 119.95911 * 2 1 3 5 5 C 1.53194 * 109.31332 * 181.38571 * 4 2 1 6 6 N 1.46927 * 108.77383 * 305.36517 * 5 4 2 7 7 C 1.36936 * 120.62706 * 233.63129 * 6 5 4 8 8 H 1.07999 * 120.00169 * 27.66101 * 7 6 5 9 9 C 1.38816 * 119.99528 * 207.66264 * 7 6 5 10 10 N 1.31618 * 120.00302 * 17.36365 * 9 7 6 11 11 Si 1.86804 * 119.99860 * 197.35878 * 9 7 6 12 12 H 1.48500 * 109.46774 * 60.00353 * 11 9 7 13 13 H 1.48495 * 109.47308 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47113 * 300.00347 * 11 9 7 15 15 C 1.46928 * 118.73995 * 53.60274 * 6 5 4 16 16 C 1.53040 * 109.45864 * 240.02114 * 2 1 3 17 17 H 1.09005 * 109.49329 * 58.63715 * 16 2 1 18 18 N 1.46495 * 109.49922 * 298.57084 * 16 2 1 19 19 C 1.34777 * 119.99808 * 155.00203 * 18 16 2 20 20 O 1.21582 * 120.00265 * 359.97438 * 19 18 16 21 21 C 1.47516 * 119.99994 * 180.02562 * 19 18 16 22 22 O 1.35186 * 127.15380 * 359.67664 * 21 19 18 23 23 N 1.21469 * 111.55467 * 179.79286 * 22 21 19 24 24 C 1.29070 * 111.68485 * 0.36054 * 23 22 21 25 25 C 1.35242 * 127.15486 * 180.02562 * 21 19 18 26 26 C 1.50109 * 131.33539 * 0.33804 * 25 21 19 27 27 C 1.53577 * 108.01585 * 163.66901 * 26 25 21 28 28 C 1.53003 * 109.80632 * 50.04713 * 27 26 25 29 29 C 1.50655 * 130.33625 * 180.02562 * 24 23 22 30 30 H 1.08994 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46555 * 59.97494 * 1 2 3 32 32 H 1.08996 * 109.47243 * 299.97637 * 1 2 3 33 33 H 1.09004 * 109.49935 * 301.33173 * 4 2 1 34 34 H 1.08994 * 109.50044 * 61.42888 * 4 2 1 35 35 H 1.08992 * 109.58907 * 185.57767 * 5 4 2 36 36 H 1.09000 * 109.70288 * 65.21774 * 5 4 2 37 37 H 0.97003 * 120.00335 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.58774 * 186.60191 * 15 6 5 39 39 H 1.09003 * 109.58558 * 66.18285 * 15 6 5 40 40 H 0.96995 * 120.00066 * 334.99281 * 18 16 2 41 41 H 1.09001 * 109.75573 * 283.29557 * 26 25 21 42 42 H 1.09003 * 109.75701 * 44.03847 * 26 25 21 43 43 H 1.09000 * 109.41467 * 289.94626 * 27 26 25 44 44 H 1.08999 * 109.36131 * 170.11945 * 27 26 25 45 45 H 1.08998 * 109.38093 * 168.10811 * 28 27 26 46 46 H 1.09001 * 109.29093 * 48.38822 * 28 27 26 47 47 H 1.08996 * 109.74123 * 282.84437 * 29 24 23 48 48 H 1.08995 * 109.73932 * 43.55273 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 1.2502 5 6 3.5714 -0.6885 1.2645 6 7 4.0679 -1.2489 0.0003 7 6 4.9757 -2.2741 0.0005 8 1 5.0084 -2.9662 0.8289 9 6 5.8539 -2.4237 -1.0641 10 7 6.0603 -1.4221 -1.8927 11 14 6.7428 -4.0465 -1.3207 12 1 5.7472 -5.1297 -1.5220 13 1 7.6160 -3.9487 -2.5178 14 1 7.5713 -4.3512 -0.1266 15 6 3.5714 -0.6889 -1.2641 16 6 2.0399 -0.7210 -1.2499 17 1 1.6568 -0.2214 -2.1398 18 7 1.5801 -2.1119 -1.2339 19 6 1.4516 -2.7925 -2.3901 20 8 1.7168 -2.2521 -3.4464 21 6 0.9880 -4.1928 -2.3740 22 8 0.6604 -4.9320 -1.2906 23 7 0.3104 -6.0522 -1.6039 24 6 0.3562 -6.2262 -2.8820 25 6 0.8087 -5.0061 -3.4395 26 6 1.0146 -4.7757 -4.9085 27 6 1.0511 -6.1447 -5.6035 28 6 -0.1556 -6.9790 -5.1691 29 6 0.0181 -7.4357 -3.7142 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5142 -0.8898 32 1 -0.3633 0.5134 0.8902 33 1 1.6572 -0.2204 2.1399 34 1 1.6977 -1.7554 1.2386 35 1 3.9416 -1.2843 2.0986 36 1 3.9164 0.3402 1.3686 37 1 6.6737 -1.5267 -2.6368 38 1 3.9417 -1.2849 -2.0982 39 1 3.9143 0.3406 -1.3674 40 1 1.3683 -2.5429 -0.3912 41 1 0.1919 -4.1820 -5.3071 42 1 1.9582 -4.2547 -5.0710 43 1 1.9689 -6.6654 -5.3303 44 1 1.0233 -6.0023 -6.6838 45 1 -0.2422 -7.8531 -5.8146 46 1 -1.0596 -6.3759 -5.2538 47 1 0.8268 -8.1637 -3.6512 48 1 -0.9090 -7.8823 -3.3549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967354083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:05 Heat of formation + Delta-G solvation = 30.023216 kcal Electronic energy + Delta-G solvation = -30595.872275 eV Core-core repulsion = 26653.865018 eV Total energy + Delta-G solvation = -3942.007257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.81371 -39.65251 -37.91390 -37.47440 -34.19147 -33.07643 -32.66023 -32.30048 -31.04024 -30.04750 -29.00792 -27.34080 -25.19863 -24.16464 -23.34276 -23.16192 -21.97111 -21.11686 -20.25076 -19.84686 -18.71811 -17.98925 -17.56762 -16.73389 -15.80979 -15.37844 -15.08841 -14.92445 -14.64947 -14.29015 -14.03812 -13.96345 -13.79350 -13.64864 -13.29270 -13.28496 -12.97587 -12.67168 -12.57809 -12.52075 -11.97957 -11.75727 -11.59771 -11.43855 -11.15095 -11.12778 -11.04982 -10.92147 -10.71901 -10.60811 -10.52148 -10.24845 -9.96631 -9.87521 -9.84944 -9.64822 -9.51751 -9.31063 -8.49482 -8.45082 -6.65948 -5.77334 -3.19473 1.06624 2.15081 2.87885 3.38405 3.42357 3.44956 3.46405 3.65827 3.89284 4.49234 4.50711 4.66769 4.69722 4.94813 5.05704 5.14322 5.20268 5.23238 5.31851 5.33472 5.37324 5.41307 5.53894 5.55376 5.60633 5.68562 5.81830 5.86786 5.88572 5.91537 5.99418 6.02596 6.14366 6.14638 6.23711 6.26022 6.33463 6.42322 6.50607 6.60137 6.74314 6.82962 6.95405 7.29530 7.62179 7.79989 7.85818 8.21940 8.45776 8.51270 9.21497 9.85506 10.40771 11.30715 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.004975 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.407345 B = 5627.015198 C = 7040.997140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.080 0.920 4 C -0.131 4.131 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.253 4.253 8 H 0.064 0.936 9 C 0.008 3.992 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.160 3.840 16 C 0.124 3.876 17 H 0.080 0.920 18 N -0.680 5.680 19 C 0.602 3.398 20 O -0.517 6.517 21 C -0.063 4.063 22 O 0.099 5.901 23 N -0.339 5.339 24 C 0.013 3.987 25 C -0.131 4.131 26 C -0.047 4.047 27 C -0.122 4.122 28 C -0.117 4.117 29 C -0.039 4.039 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.255 0.745 38 H 0.098 0.902 39 H 0.029 0.971 40 H 0.402 0.598 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.557 -5.275 -3.179 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.170 4.170 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.383 4.383 8 H 0.081 0.919 9 C -0.191 4.191 10 N -0.542 5.542 11 Si 0.725 3.275 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.033 3.967 16 C 0.019 3.981 17 H 0.098 0.902 18 N -0.329 5.329 19 C 0.385 3.615 20 O -0.393 6.393 21 C -0.127 4.127 22 O 0.031 5.969 23 N -0.043 5.043 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.084 4.084 27 C -0.160 4.160 28 C -0.155 4.155 29 C -0.077 4.077 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.238 0.762 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.548 -5.605 -3.027 15.881 hybrid contribution 0.677 -0.800 -0.272 1.082 sum -13.871 -6.404 -3.299 15.630 Atomic orbital electron populations 1.21867 0.95911 1.01468 1.01078 1.21317 0.94666 0.99945 0.95323 0.90156 1.22098 0.99228 0.99559 0.96122 1.20938 0.90667 0.96585 0.90235 1.43977 1.48269 1.39585 0.99170 1.19054 1.09966 1.03068 1.06180 0.91859 1.24972 0.97169 0.97119 0.99879 1.69984 1.37524 1.28930 1.17756 0.86482 0.79363 0.84258 0.77393 1.21217 1.21566 1.20856 1.21222 0.86338 0.98025 0.91144 1.21945 0.99273 0.79526 0.97383 0.90164 1.45763 1.65032 1.14296 1.07851 1.16397 0.78410 0.81567 0.85153 1.90826 1.50991 1.66824 1.30707 1.23704 1.06297 0.95911 0.86785 1.85236 1.62530 1.16754 1.32419 1.73392 1.15973 0.98607 1.16343 1.23355 1.02946 0.98375 0.90059 1.21038 1.02198 0.92258 0.98152 1.20077 1.04050 0.97524 0.86772 1.21684 0.98598 0.95320 1.00379 1.21612 0.99128 1.00303 0.94477 1.20100 1.02639 0.92014 0.92909 0.93005 0.93035 0.93007 0.92608 0.92586 0.92756 0.96327 0.93541 0.88402 0.95339 0.76247 0.89686 0.88750 0.91413 0.90709 0.90632 0.91335 0.89441 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.05 37.16 0.34 -1.49 16 2 C -0.09 -1.41 2.48 -90.58 -0.22 -1.64 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.13 -2.03 5.20 -26.61 -0.14 -2.17 16 5 C 0.14 2.79 6.52 -3.71 -0.02 2.76 16 6 N -0.59 -14.02 2.91 -172.32 -0.50 -14.52 16 7 C -0.25 -6.82 9.59 -15.06 -0.14 -6.97 16 8 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 9 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 10 N -0.90 -26.23 11.19 55.49 0.62 -25.61 16 11 Si 0.90 22.30 29.59 -169.99 -5.03 17.27 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.16 3.71 4.91 -3.71 -0.02 3.69 16 16 C 0.12 2.27 2.24 -67.81 -0.15 2.12 16 17 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 18 N -0.68 -12.17 4.25 -54.74 -0.23 -12.41 16 19 C 0.60 11.48 7.79 -12.48 -0.10 11.38 16 20 O -0.52 -10.96 15.59 5.29 0.08 -10.88 16 21 C -0.06 -1.10 7.28 -36.87 -0.27 -1.36 16 22 O 0.10 1.70 11.10 13.83 0.15 1.85 16 23 N -0.34 -5.60 12.03 33.15 0.40 -5.20 16 24 C 0.01 0.20 7.21 -82.51 -0.60 -0.40 16 25 C -0.13 -2.07 6.02 -104.71 -0.63 -2.70 16 26 C -0.05 -0.63 5.59 -27.87 -0.16 -0.78 16 27 C -0.12 -1.24 5.87 -26.43 -0.16 -1.39 16 28 C -0.12 -1.01 5.84 -26.48 -0.15 -1.17 16 29 C -0.04 -0.40 6.32 -27.66 -0.17 -0.57 16 30 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.88 6.40 -51.93 -0.33 0.54 16 35 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 6.73 6.48 -40.82 -0.26 6.46 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.44 7.77 -51.93 -0.40 1.03 16 43 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -31.04 376.50 -9.07 -40.11 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.55 Total: 4.28 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -2.68 Total: -0.56 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.29 Total: -57.74 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.24 Total: -9.03 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.04 -9.07 -40.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967354083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.134 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds