Wall clock time and date at job start Tue Mar 31 2020 17:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.45756 * 2 1 4 4 C 1.53039 * 109.45641 * 119.95911 * 2 1 3 5 5 C 1.53194 * 109.31332 * 181.38571 * 4 2 1 6 6 N 1.46927 * 108.77383 * 305.36517 * 5 4 2 7 7 C 1.36936 * 120.62706 * 233.63129 * 6 5 4 8 8 H 1.07999 * 120.00169 * 27.66101 * 7 6 5 9 9 C 1.38816 * 119.99528 * 207.66264 * 7 6 5 10 10 N 1.31618 * 120.00302 * 17.36365 * 9 7 6 11 11 Si 1.86804 * 119.99860 * 197.35878 * 9 7 6 12 12 H 1.48500 * 109.46774 * 60.00353 * 11 9 7 13 13 H 1.48495 * 109.47308 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47113 * 300.00347 * 11 9 7 15 15 C 1.46928 * 118.73995 * 53.60274 * 6 5 4 16 16 C 1.53040 * 109.45864 * 240.02114 * 2 1 3 17 17 H 1.09005 * 109.49329 * 58.63715 * 16 2 1 18 18 N 1.46495 * 109.49922 * 298.57084 * 16 2 1 19 19 C 1.34777 * 119.99808 * 155.00203 * 18 16 2 20 20 O 1.21582 * 120.00265 * 359.97438 * 19 18 16 21 21 C 1.47516 * 119.99994 * 180.02562 * 19 18 16 22 22 O 1.35186 * 127.15380 * 359.67664 * 21 19 18 23 23 N 1.21469 * 111.55467 * 179.79286 * 22 21 19 24 24 C 1.29070 * 111.68485 * 0.36054 * 23 22 21 25 25 C 1.35242 * 127.15486 * 180.02562 * 21 19 18 26 26 C 1.50109 * 131.33539 * 0.33804 * 25 21 19 27 27 C 1.53577 * 108.01585 * 163.66901 * 26 25 21 28 28 C 1.53003 * 109.80632 * 50.04713 * 27 26 25 29 29 C 1.50655 * 130.33625 * 180.02562 * 24 23 22 30 30 H 1.08994 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46555 * 59.97494 * 1 2 3 32 32 H 1.08996 * 109.47243 * 299.97637 * 1 2 3 33 33 H 1.09004 * 109.49935 * 301.33173 * 4 2 1 34 34 H 1.08994 * 109.50044 * 61.42888 * 4 2 1 35 35 H 1.08992 * 109.58907 * 185.57767 * 5 4 2 36 36 H 1.09000 * 109.70288 * 65.21774 * 5 4 2 37 37 H 0.97003 * 120.00335 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.58774 * 186.60191 * 15 6 5 39 39 H 1.09003 * 109.58558 * 66.18285 * 15 6 5 40 40 H 0.96995 * 120.00066 * 334.99281 * 18 16 2 41 41 H 1.09001 * 109.75573 * 283.29557 * 26 25 21 42 42 H 1.09003 * 109.75701 * 44.03847 * 26 25 21 43 43 H 1.09000 * 109.41467 * 289.94626 * 27 26 25 44 44 H 1.08999 * 109.36131 * 170.11945 * 27 26 25 45 45 H 1.08998 * 109.38093 * 168.10811 * 28 27 26 46 46 H 1.09001 * 109.29093 * 48.38822 * 28 27 26 47 47 H 1.08996 * 109.74123 * 282.84437 * 29 24 23 48 48 H 1.08995 * 109.73932 * 43.55273 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 1.2502 5 6 3.5714 -0.6885 1.2645 6 7 4.0679 -1.2489 0.0003 7 6 4.9757 -2.2741 0.0005 8 1 5.0084 -2.9662 0.8289 9 6 5.8539 -2.4237 -1.0641 10 7 6.0603 -1.4221 -1.8927 11 14 6.7428 -4.0465 -1.3207 12 1 5.7472 -5.1297 -1.5220 13 1 7.6160 -3.9487 -2.5178 14 1 7.5713 -4.3512 -0.1266 15 6 3.5714 -0.6889 -1.2641 16 6 2.0399 -0.7210 -1.2499 17 1 1.6568 -0.2214 -2.1398 18 7 1.5801 -2.1119 -1.2339 19 6 1.4516 -2.7925 -2.3901 20 8 1.7168 -2.2521 -3.4464 21 6 0.9880 -4.1928 -2.3740 22 8 0.6604 -4.9320 -1.2906 23 7 0.3104 -6.0522 -1.6039 24 6 0.3562 -6.2262 -2.8820 25 6 0.8087 -5.0061 -3.4395 26 6 1.0146 -4.7757 -4.9085 27 6 1.0511 -6.1447 -5.6035 28 6 -0.1556 -6.9790 -5.1691 29 6 0.0181 -7.4357 -3.7142 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5142 -0.8898 32 1 -0.3633 0.5134 0.8902 33 1 1.6572 -0.2204 2.1399 34 1 1.6977 -1.7554 1.2386 35 1 3.9416 -1.2843 2.0986 36 1 3.9164 0.3402 1.3686 37 1 6.6737 -1.5267 -2.6368 38 1 3.9417 -1.2849 -2.0982 39 1 3.9143 0.3406 -1.3674 40 1 1.3683 -2.5429 -0.3912 41 1 0.1919 -4.1820 -5.3071 42 1 1.9582 -4.2547 -5.0710 43 1 1.9689 -6.6654 -5.3303 44 1 1.0233 -6.0023 -6.6838 45 1 -0.2422 -7.8531 -5.8146 46 1 -1.0596 -6.3759 -5.2538 47 1 0.8268 -8.1637 -3.6512 48 1 -0.9090 -7.8823 -3.3549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967354083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:04 Heat of formation + Delta-G solvation = 11.685309 kcal Electronic energy + Delta-G solvation = -30596.667466 eV Core-core repulsion = 26653.865018 eV Total energy + Delta-G solvation = -3942.802448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.04403 -41.17960 -39.25900 -38.65467 -35.98114 -34.53748 -33.91368 -33.38914 -32.84435 -31.29388 -30.41927 -28.93527 -26.36181 -25.80985 -24.74213 -24.22103 -23.45589 -22.74681 -21.49483 -20.85628 -20.32416 -19.26778 -18.82307 -18.65848 -17.11440 -16.87532 -16.78685 -16.13871 -15.98816 -15.72578 -15.61346 -15.17797 -14.97673 -14.92109 -14.78297 -14.59194 -14.39104 -14.09663 -13.67549 -13.60135 -13.42318 -13.16283 -13.04925 -12.85021 -12.73526 -12.64457 -12.50998 -12.28809 -11.97963 -11.92504 -11.89669 -11.57785 -11.56254 -11.40563 -11.21274 -11.08281 -11.00140 -10.61810 -10.55719 -10.05677 -8.65729 -7.88736 -5.31951 -0.28716 0.97139 1.36115 1.39535 1.44405 1.50709 1.95446 2.26385 2.45480 2.83631 3.26392 3.39141 3.66875 3.69876 3.81768 3.85309 3.92000 3.98745 4.00435 4.11983 4.27433 4.36479 4.39469 4.49466 4.50213 4.67350 4.70090 4.78789 4.83336 4.87094 4.88166 4.94791 4.95985 5.07469 5.10982 5.11889 5.17386 5.23318 5.25582 5.26359 5.36807 5.45672 5.48676 5.56337 5.64233 5.70099 6.36377 6.37734 6.91903 7.04114 7.13401 7.86697 8.36351 9.16023 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.004975 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.407345 B = 5627.015198 C = 7040.997140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.085 0.915 4 C -0.119 4.119 5 C 0.136 3.864 6 N -0.601 5.601 7 C -0.251 4.251 8 H 0.065 0.935 9 C -0.045 4.045 10 N -0.929 5.929 11 Si 0.947 3.053 12 H -0.290 1.290 13 H -0.295 1.295 14 H -0.270 1.270 15 C 0.169 3.831 16 C 0.134 3.866 17 H 0.077 0.923 18 N -0.673 5.673 19 C 0.599 3.401 20 O -0.547 6.547 21 C -0.088 4.088 22 O 0.085 5.915 23 N -0.354 5.354 24 C 0.022 3.978 25 C -0.132 4.132 26 C -0.051 4.051 27 C -0.119 4.119 28 C -0.111 4.111 29 C -0.042 4.042 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.247 0.753 38 H 0.051 0.949 39 H 0.006 0.994 40 H 0.408 0.592 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.951 -6.794 -2.719 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.103 0.897 4 C -0.158 4.158 5 C 0.011 3.989 6 N -0.325 5.325 7 C -0.381 4.381 8 H 0.083 0.917 9 C -0.241 4.241 10 N -0.576 5.576 11 Si 0.777 3.223 12 H -0.217 1.217 13 H -0.221 1.221 14 H -0.196 1.196 15 C 0.042 3.958 16 C 0.029 3.971 17 H 0.095 0.905 18 N -0.322 5.322 19 C 0.383 3.617 20 O -0.426 6.426 21 C -0.152 4.152 22 O 0.019 5.981 23 N -0.061 5.061 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.088 4.088 27 C -0.156 4.156 28 C -0.148 4.148 29 C -0.079 4.079 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.245 0.755 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.127 0.873 46 H 0.091 0.909 47 H 0.117 0.883 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.959 -7.106 -2.505 18.558 hybrid contribution 1.426 -0.325 -0.395 1.515 sum -15.533 -7.431 -2.900 17.462 Atomic orbital electron populations 1.21781 0.93103 1.01960 1.02569 1.21286 0.96831 0.99399 0.93014 0.89695 1.21982 0.95698 1.00282 0.97803 1.21145 0.93589 0.96082 0.88076 1.44175 1.48071 1.39421 1.00817 1.19351 1.09505 1.03584 1.05668 0.91744 1.25597 0.98661 0.99516 1.00338 1.70135 1.38619 1.30503 1.18295 0.85633 0.78289 0.81062 0.77337 1.21726 1.22117 1.19561 1.20924 0.89663 0.95574 0.89631 1.21699 0.95634 0.80311 0.99467 0.90467 1.45695 1.64480 1.14119 1.07945 1.16637 0.77867 0.82238 0.84954 1.90799 1.52317 1.67790 1.31678 1.23538 1.08174 0.95635 0.87888 1.85209 1.63385 1.17096 1.32361 1.73371 1.16860 0.98366 1.17482 1.24083 1.01013 0.99252 0.89547 1.21530 1.00776 0.92422 0.98970 1.20198 1.02922 0.99786 0.85878 1.21711 0.99260 0.93248 1.01393 1.21633 0.98206 1.01314 0.93682 1.20421 1.03948 0.90388 0.93182 0.93012 0.92664 0.90450 0.88917 0.92474 0.92766 0.96383 0.94424 0.93028 0.97568 0.75462 0.88670 0.91467 0.92128 0.88401 0.87322 0.90895 0.88287 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.05 71.98 0.65 -2.36 16 2 C -0.09 -2.46 2.48 -10.76 -0.03 -2.48 16 3 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.12 -3.41 5.20 30.67 0.16 -3.25 16 5 C 0.14 5.23 6.52 86.36 0.56 5.80 16 6 N -0.60 -29.29 2.91 -699.09 -2.04 -31.33 16 7 C -0.25 -13.79 9.59 84.03 0.81 -12.99 16 8 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 9 C -0.05 -2.61 4.91 84.86 0.42 -2.20 16 10 N -0.93 -56.82 11.19 21.65 0.24 -56.58 16 11 Si 0.95 47.11 29.59 68.60 2.03 49.13 16 12 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 13 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 14 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 15 C 0.17 8.20 4.91 86.36 0.42 8.63 16 16 C 0.13 5.00 2.24 45.07 0.10 5.10 16 17 H 0.08 2.93 7.58 -2.38 -0.02 2.91 16 18 N -0.67 -24.49 4.25 -445.37 -1.89 -26.38 16 19 C 0.60 23.69 7.79 86.69 0.67 24.37 16 20 O -0.55 -24.41 15.59 -3.97 -0.06 -24.47 16 21 C -0.09 -3.17 7.28 24.03 0.17 -2.99 16 22 O 0.08 2.92 11.10 59.51 0.66 3.59 16 23 N -0.35 -11.45 12.03 -50.86 -0.61 -12.06 16 24 C 0.02 0.62 7.21 43.77 0.32 0.94 16 25 C -0.13 -4.15 6.02 -19.92 -0.12 -4.27 16 26 C -0.05 -1.34 5.59 29.86 0.17 -1.17 16 27 C -0.12 -2.15 5.87 30.79 0.18 -1.97 16 28 C -0.11 -1.51 5.84 30.76 0.18 -1.33 16 29 C -0.04 -0.73 6.32 29.99 0.19 -0.54 16 30 H 0.05 1.15 7.54 -2.39 -0.02 1.14 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.06 1.66 6.40 -2.39 -0.02 1.64 16 35 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.05 3.00 6.03 -2.39 -0.01 2.98 16 39 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.41 13.63 6.48 -92.71 -0.60 13.03 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.07 2.15 7.77 -2.39 -0.02 2.13 16 43 H 0.06 1.19 8.11 -2.39 -0.02 1.17 16 44 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 47 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -71.33 376.50 3.56 -67.78 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.37 Total: 21.04 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 4.86 Total: 9.28 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -4.30 Total: -126.35 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.60 Total: -20.88 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Total: -71.33 3.56 -67.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967354083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.462 kcal (2) G-P(sol) polarization free energy of solvation -71.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds