Wall clock time and date at job start Tue Mar 31 2020 17:11:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08996 * 109.45756 * 2 1
4 4 C 1.53039 * 109.45641 * 119.95911 * 2 1 3
5 5 C 1.53194 * 109.31332 * 181.38571 * 4 2 1
6 6 N 1.46927 * 108.77383 * 305.36517 * 5 4 2
7 7 C 1.36936 * 120.62706 * 233.63129 * 6 5 4
8 8 H 1.07999 * 120.00169 * 27.66101 * 7 6 5
9 9 C 1.38816 * 119.99528 * 207.66264 * 7 6 5
10 10 N 1.31618 * 120.00302 * 17.36365 * 9 7 6
11 11 Si 1.86804 * 119.99860 * 197.35878 * 9 7 6
12 12 H 1.48500 * 109.46774 * 60.00353 * 11 9 7
13 13 H 1.48495 * 109.47308 * 179.97438 * 11 9 7
14 14 H 1.48492 * 109.47113 * 300.00347 * 11 9 7
15 15 C 1.46928 * 118.73995 * 53.60274 * 6 5 4
16 16 C 1.53040 * 109.45864 * 240.02114 * 2 1 3
17 17 H 1.09005 * 109.49329 * 58.63715 * 16 2 1
18 18 N 1.46495 * 109.49922 * 298.57084 * 16 2 1
19 19 C 1.34777 * 119.99808 * 155.00203 * 18 16 2
20 20 O 1.21582 * 120.00265 * 359.97438 * 19 18 16
21 21 C 1.47516 * 119.99994 * 180.02562 * 19 18 16
22 22 O 1.35186 * 127.15380 * 359.67664 * 21 19 18
23 23 N 1.21469 * 111.55467 * 179.79286 * 22 21 19
24 24 C 1.29070 * 111.68485 * 0.36054 * 23 22 21
25 25 C 1.35242 * 127.15486 * 180.02562 * 21 19 18
26 26 C 1.50109 * 131.33539 * 0.33804 * 25 21 19
27 27 C 1.53577 * 108.01585 * 163.66901 * 26 25 21
28 28 C 1.53003 * 109.80632 * 50.04713 * 27 26 25
29 29 C 1.50655 * 130.33625 * 180.02562 * 24 23 22
30 30 H 1.08994 * 109.47078 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46555 * 59.97494 * 1 2 3
32 32 H 1.08996 * 109.47243 * 299.97637 * 1 2 3
33 33 H 1.09004 * 109.49935 * 301.33173 * 4 2 1
34 34 H 1.08994 * 109.50044 * 61.42888 * 4 2 1
35 35 H 1.08992 * 109.58907 * 185.57767 * 5 4 2
36 36 H 1.09000 * 109.70288 * 65.21774 * 5 4 2
37 37 H 0.97003 * 120.00335 * 180.02562 * 10 9 7
38 38 H 1.09000 * 109.58774 * 186.60191 * 15 6 5
39 39 H 1.09003 * 109.58558 * 66.18285 * 15 6 5
40 40 H 0.96995 * 120.00066 * 334.99281 * 18 16 2
41 41 H 1.09001 * 109.75573 * 283.29557 * 26 25 21
42 42 H 1.09003 * 109.75701 * 44.03847 * 26 25 21
43 43 H 1.09000 * 109.41467 * 289.94626 * 27 26 25
44 44 H 1.08999 * 109.36131 * 170.11945 * 27 26 25
45 45 H 1.08998 * 109.38093 * 168.10811 * 28 27 26
46 46 H 1.09001 * 109.29093 * 48.38822 * 28 27 26
47 47 H 1.08996 * 109.74123 * 282.84437 * 29 24 23
48 48 H 1.08995 * 109.73932 * 43.55273 * 29 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0398 -0.7206 1.2502
5 6 3.5714 -0.6885 1.2645
6 7 4.0679 -1.2489 0.0003
7 6 4.9757 -2.2741 0.0005
8 1 5.0084 -2.9662 0.8289
9 6 5.8539 -2.4237 -1.0641
10 7 6.0603 -1.4221 -1.8927
11 14 6.7428 -4.0465 -1.3207
12 1 5.7472 -5.1297 -1.5220
13 1 7.6160 -3.9487 -2.5178
14 1 7.5713 -4.3512 -0.1266
15 6 3.5714 -0.6889 -1.2641
16 6 2.0399 -0.7210 -1.2499
17 1 1.6568 -0.2214 -2.1398
18 7 1.5801 -2.1119 -1.2339
19 6 1.4516 -2.7925 -2.3901
20 8 1.7168 -2.2521 -3.4464
21 6 0.9880 -4.1928 -2.3740
22 8 0.6604 -4.9320 -1.2906
23 7 0.3104 -6.0522 -1.6039
24 6 0.3562 -6.2262 -2.8820
25 6 0.8087 -5.0061 -3.4395
26 6 1.0146 -4.7757 -4.9085
27 6 1.0511 -6.1447 -5.6035
28 6 -0.1556 -6.9790 -5.1691
29 6 0.0181 -7.4357 -3.7142
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3632 0.5142 -0.8898
32 1 -0.3633 0.5134 0.8902
33 1 1.6572 -0.2204 2.1399
34 1 1.6977 -1.7554 1.2386
35 1 3.9416 -1.2843 2.0986
36 1 3.9164 0.3402 1.3686
37 1 6.6737 -1.5267 -2.6368
38 1 3.9417 -1.2849 -2.0982
39 1 3.9143 0.3406 -1.3674
40 1 1.3683 -2.5429 -0.3912
41 1 0.1919 -4.1820 -5.3071
42 1 1.9582 -4.2547 -5.0710
43 1 1.9689 -6.6654 -5.3303
44 1 1.0233 -6.0023 -6.6838
45 1 -0.2422 -7.8531 -5.8146
46 1 -1.0596 -6.3759 -5.2538
47 1 0.8268 -8.1637 -3.6512
48 1 -0.9090 -7.8823 -3.3549
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000967354083.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:11:04
Heat of formation + Delta-G solvation = 11.685309 kcal
Electronic energy + Delta-G solvation = -30596.667466 eV
Core-core repulsion = 26653.865018 eV
Total energy + Delta-G solvation = -3942.802448 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-46.04403 -41.17960 -39.25900 -38.65467 -35.98114 -34.53748 -33.91368 -33.38914
-32.84435 -31.29388 -30.41927 -28.93527 -26.36181 -25.80985 -24.74213 -24.22103
-23.45589 -22.74681 -21.49483 -20.85628 -20.32416 -19.26778 -18.82307 -18.65848
-17.11440 -16.87532 -16.78685 -16.13871 -15.98816 -15.72578 -15.61346 -15.17797
-14.97673 -14.92109 -14.78297 -14.59194 -14.39104 -14.09663 -13.67549 -13.60135
-13.42318 -13.16283 -13.04925 -12.85021 -12.73526 -12.64457 -12.50998 -12.28809
-11.97963 -11.92504 -11.89669 -11.57785 -11.56254 -11.40563 -11.21274 -11.08281
-11.00140 -10.61810 -10.55719 -10.05677 -8.65729 -7.88736 -5.31951 -0.28716
0.97139 1.36115 1.39535 1.44405 1.50709 1.95446 2.26385 2.45480
2.83631 3.26392 3.39141 3.66875 3.69876 3.81768 3.85309 3.92000
3.98745 4.00435 4.11983 4.27433 4.36479 4.39469 4.49466 4.50213
4.67350 4.70090 4.78789 4.83336 4.87094 4.88166 4.94791 4.95985
5.07469 5.10982 5.11889 5.17386 5.23318 5.25582 5.26359 5.36807
5.45672 5.48676 5.56337 5.64233 5.70099 6.36377 6.37734 6.91903
7.04114 7.13401 7.86697 8.36351 9.16023
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.010526 B = 0.004975 C = 0.003976
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2659.407345 B = 5627.015198 C = 7040.997140
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.086 4.086
3 H 0.085 0.915
4 C -0.119 4.119
5 C 0.136 3.864
6 N -0.601 5.601
7 C -0.251 4.251
8 H 0.065 0.935
9 C -0.045 4.045
10 N -0.929 5.929
11 Si 0.947 3.053
12 H -0.290 1.290
13 H -0.295 1.295
14 H -0.270 1.270
15 C 0.169 3.831
16 C 0.134 3.866
17 H 0.077 0.923
18 N -0.673 5.673
19 C 0.599 3.401
20 O -0.547 6.547
21 C -0.088 4.088
22 O 0.085 5.915
23 N -0.354 5.354
24 C 0.022 3.978
25 C -0.132 4.132
26 C -0.051 4.051
27 C -0.119 4.119
28 C -0.111 4.111
29 C -0.042 4.042
30 H 0.051 0.949
31 H 0.054 0.946
32 H 0.077 0.923
33 H 0.092 0.908
34 H 0.057 0.943
35 H 0.054 0.946
36 H 0.018 0.982
37 H 0.247 0.753
38 H 0.051 0.949
39 H 0.006 0.994
40 H 0.408 0.592
41 H 0.095 0.905
42 H 0.067 0.933
43 H 0.060 0.940
44 H 0.097 0.903
45 H 0.108 0.892
46 H 0.072 0.928
47 H 0.099 0.901
48 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.951 -6.794 -2.719 18.463
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.105 4.105
3 H 0.103 0.897
4 C -0.158 4.158
5 C 0.011 3.989
6 N -0.325 5.325
7 C -0.381 4.381
8 H 0.083 0.917
9 C -0.241 4.241
10 N -0.576 5.576
11 Si 0.777 3.223
12 H -0.217 1.217
13 H -0.221 1.221
14 H -0.196 1.196
15 C 0.042 3.958
16 C 0.029 3.971
17 H 0.095 0.905
18 N -0.322 5.322
19 C 0.383 3.617
20 O -0.426 6.426
21 C -0.152 4.152
22 O 0.019 5.981
23 N -0.061 5.061
24 C -0.139 4.139
25 C -0.137 4.137
26 C -0.088 4.088
27 C -0.156 4.156
28 C -0.148 4.148
29 C -0.079 4.079
30 H 0.070 0.930
31 H 0.073 0.927
32 H 0.096 0.904
33 H 0.111 0.889
34 H 0.075 0.925
35 H 0.072 0.928
36 H 0.036 0.964
37 H 0.056 0.944
38 H 0.070 0.930
39 H 0.024 0.976
40 H 0.245 0.755
41 H 0.113 0.887
42 H 0.085 0.915
43 H 0.079 0.921
44 H 0.116 0.884
45 H 0.127 0.873
46 H 0.091 0.909
47 H 0.117 0.883
48 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -16.959 -7.106 -2.505 18.558
hybrid contribution 1.426 -0.325 -0.395 1.515
sum -15.533 -7.431 -2.900 17.462
Atomic orbital electron populations
1.21781 0.93103 1.01960 1.02569 1.21286 0.96831 0.99399 0.93014
0.89695 1.21982 0.95698 1.00282 0.97803 1.21145 0.93589 0.96082
0.88076 1.44175 1.48071 1.39421 1.00817 1.19351 1.09505 1.03584
1.05668 0.91744 1.25597 0.98661 0.99516 1.00338 1.70135 1.38619
1.30503 1.18295 0.85633 0.78289 0.81062 0.77337 1.21726 1.22117
1.19561 1.20924 0.89663 0.95574 0.89631 1.21699 0.95634 0.80311
0.99467 0.90467 1.45695 1.64480 1.14119 1.07945 1.16637 0.77867
0.82238 0.84954 1.90799 1.52317 1.67790 1.31678 1.23538 1.08174
0.95635 0.87888 1.85209 1.63385 1.17096 1.32361 1.73371 1.16860
0.98366 1.17482 1.24083 1.01013 0.99252 0.89547 1.21530 1.00776
0.92422 0.98970 1.20198 1.02922 0.99786 0.85878 1.21711 0.99260
0.93248 1.01393 1.21633 0.98206 1.01314 0.93682 1.20421 1.03948
0.90388 0.93182 0.93012 0.92664 0.90450 0.88917 0.92474 0.92766
0.96383 0.94424 0.93028 0.97568 0.75462 0.88670 0.91467 0.92128
0.88401 0.87322 0.90895 0.88287 0.87643
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.01 9.05 71.98 0.65 -2.36 16
2 C -0.09 -2.46 2.48 -10.76 -0.03 -2.48 16
3 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16
4 C -0.12 -3.41 5.20 30.67 0.16 -3.25 16
5 C 0.14 5.23 6.52 86.36 0.56 5.80 16
6 N -0.60 -29.29 2.91 -699.09 -2.04 -31.33 16
7 C -0.25 -13.79 9.59 84.03 0.81 -12.99 16
8 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16
9 C -0.05 -2.61 4.91 84.86 0.42 -2.20 16
10 N -0.93 -56.82 11.19 21.65 0.24 -56.58 16
11 Si 0.95 47.11 29.59 68.60 2.03 49.13 16
12 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16
13 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16
14 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16
15 C 0.17 8.20 4.91 86.36 0.42 8.63 16
16 C 0.13 5.00 2.24 45.07 0.10 5.10 16
17 H 0.08 2.93 7.58 -2.38 -0.02 2.91 16
18 N -0.67 -24.49 4.25 -445.37 -1.89 -26.38 16
19 C 0.60 23.69 7.79 86.69 0.67 24.37 16
20 O -0.55 -24.41 15.59 -3.97 -0.06 -24.47 16
21 C -0.09 -3.17 7.28 24.03 0.17 -2.99 16
22 O 0.08 2.92 11.10 59.51 0.66 3.59 16
23 N -0.35 -11.45 12.03 -50.86 -0.61 -12.06 16
24 C 0.02 0.62 7.21 43.77 0.32 0.94 16
25 C -0.13 -4.15 6.02 -19.92 -0.12 -4.27 16
26 C -0.05 -1.34 5.59 29.86 0.17 -1.17 16
27 C -0.12 -2.15 5.87 30.79 0.18 -1.97 16
28 C -0.11 -1.51 5.84 30.76 0.18 -1.33 16
29 C -0.04 -0.73 6.32 29.99 0.19 -0.54 16
30 H 0.05 1.15 7.54 -2.39 -0.02 1.14 16
31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
33 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16
34 H 0.06 1.66 6.40 -2.39 -0.02 1.64 16
35 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16
36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16
37 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16
38 H 0.05 3.00 6.03 -2.39 -0.01 2.98 16
39 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16
40 H 0.41 13.63 6.48 -92.71 -0.60 13.03 16
41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16
42 H 0.07 2.15 7.77 -2.39 -0.02 2.13 16
43 H 0.06 1.19 8.11 -2.39 -0.02 1.17 16
44 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16
45 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16
46 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16
47 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16
48 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16
Total: -1.00 -71.33 376.50 3.56 -67.78
By element:
Atomic # 1 Polarization: 20.67 SS G_CDS: 0.37 Total: 21.04 kcal
Atomic # 6 Polarization: 4.42 SS G_CDS: 4.86 Total: 9.28 kcal
Atomic # 7 Polarization: -122.05 SS G_CDS: -4.30 Total: -126.35 kcal
Atomic # 8 Polarization: -21.48 SS G_CDS: 0.60 Total: -20.88 kcal
Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal
Total: -71.33 3.56 -67.78 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000967354083.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.462 kcal
(2) G-P(sol) polarization free energy of solvation -71.334 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.777 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.685 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds