Wall clock time and date at job start Tue Mar 31 2020 17:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35911 * 116.99744 * 2 1 4 4 C 1.39140 * 120.47383 * 180.02562 * 3 2 1 5 5 C 1.38538 * 118.37428 * 179.72336 * 4 3 2 6 6 C 1.38249 * 119.22258 * 0.49622 * 5 4 3 7 7 C 1.50697 * 119.56102 * 179.76888 * 6 5 4 8 8 C 1.50699 * 109.47391 * 124.72332 * 7 6 5 9 9 O 1.21283 * 119.99583 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99787 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99768 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.49536 * 324.93945 * 11 10 8 13 13 C 1.53193 * 109.49748 * 84.99907 * 11 10 8 14 14 N 1.46930 * 108.77112 * 65.34956 * 13 11 10 15 15 C 1.36940 * 120.63019 * 233.58305 * 14 13 11 16 16 H 1.08001 * 119.99585 * 151.84554 * 15 14 13 17 17 C 1.38812 * 119.99729 * 331.85067 * 15 14 13 18 18 N 1.31613 * 120.00454 * 343.06999 * 17 15 14 19 19 Si 1.86807 * 119.99638 * 163.07497 * 17 15 14 20 20 H 1.48497 * 109.47440 * 59.99429 * 19 17 15 21 21 H 1.48494 * 109.47156 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46966 * 299.99532 * 19 17 15 23 23 C 1.46928 * 118.73715 * 53.61004 * 14 13 11 24 24 C 1.53192 * 108.77556 * 306.38738 * 23 14 13 25 25 C 1.53039 * 109.52614 * 204.85744 * 11 10 8 26 26 H 1.09003 * 109.45865 * 181.39340 * 25 11 10 27 27 C 1.52997 * 109.45967 * 61.41761 * 25 11 10 28 28 N 1.31854 * 120.88346 * 359.49294 * 6 5 4 29 29 C 1.31835 * 121.78158 * 0.25345 * 28 6 5 30 30 H 1.09000 * 109.47053 * 300.00054 * 1 2 3 31 31 H 1.08992 * 109.47252 * 60.00289 * 1 2 3 32 32 H 1.09000 * 109.46753 * 179.97438 * 1 2 3 33 33 H 1.08003 * 120.81219 * 359.97438 * 4 3 2 34 34 H 1.08006 * 120.38755 * 180.26669 * 5 4 3 35 35 H 1.09003 * 109.46666 * 4.72368 * 7 6 5 36 36 H 1.08999 * 109.47005 * 244.73160 * 7 6 5 37 37 H 0.96999 * 120.00179 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.58946 * 305.56628 * 13 11 10 39 39 H 1.08996 * 109.58933 * 185.13833 * 13 11 10 40 40 H 0.97003 * 120.00156 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.58707 * 66.17774 * 23 14 13 42 42 H 1.09006 * 109.58416 * 186.59914 * 23 14 13 43 43 H 1.09002 * 109.49425 * 174.59034 * 24 23 14 44 44 H 1.08996 * 109.49499 * 294.68852 * 24 23 14 45 45 H 1.08998 * 109.47482 * 60.00068 * 27 25 11 46 46 H 1.08997 * 109.46954 * 180.02562 * 27 25 11 47 47 H 1.08998 * 109.47357 * 300.00073 * 27 25 11 48 48 H 1.07998 * 119.65745 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2954 -0.0005 5 6 4.0181 2.5520 -0.0064 6 6 3.2079 3.6722 -0.0010 7 6 3.8343 5.0428 -0.0021 8 6 3.3016 5.8377 -1.1662 9 8 2.4925 5.3404 -1.9205 10 7 3.7242 7.1013 -1.3691 11 6 3.2059 7.8743 -2.5005 12 1 3.0402 7.2106 -3.3491 13 6 1.8829 8.5370 -2.1038 14 7 2.1463 9.5230 -1.0468 15 6 1.4531 9.4826 0.1335 16 1 1.9064 9.8583 1.0390 17 6 0.1681 8.9588 0.1661 18 7 -0.5110 8.8112 -0.9516 19 14 -0.5974 8.4633 1.7965 20 1 -0.6699 9.6475 2.6895 21 1 -1.9658 7.9369 1.5611 22 1 0.2348 7.4121 2.4349 23 6 3.1671 10.5536 -1.2806 24 6 4.4757 9.8683 -1.6866 25 6 4.2175 8.9555 -2.8876 26 1 3.8201 9.5457 -3.7133 27 6 5.5293 8.2957 -3.3176 28 7 1.8944 3.5574 -0.0005 29 6 1.3002 2.3805 0.0000 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0433 0.4030 -0.0005 34 1 5.0932 2.6553 -0.0113 35 1 4.9164 4.9476 -0.0919 36 1 3.5907 5.5543 0.9291 37 1 4.3716 7.4989 -0.7660 38 1 1.1917 7.7800 -1.7332 39 1 1.4503 9.0369 -2.9703 40 1 -1.4092 8.4454 -0.9288 41 1 2.8392 11.2180 -2.0801 42 1 3.3232 11.1272 -0.3669 43 1 5.2137 10.6239 -1.9559 44 1 4.8496 9.2749 -0.8523 45 1 5.3459 7.6465 -4.1736 46 1 6.2500 9.0657 -3.5928 47 1 5.9266 7.7051 -2.4921 48 1 0.2216 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967941173.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:05 Heat of formation + Delta-G solvation = -15.868493 kcal Electronic energy + Delta-G solvation = -29740.135512 eV Core-core repulsion = 25796.138241 eV Total energy + Delta-G solvation = -3943.997271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.68986 -39.44578 -38.28458 -37.22419 -34.03487 -32.70130 -32.36268 -32.19675 -30.94618 -29.31313 -28.06969 -27.37413 -26.79224 -24.01329 -23.43334 -22.54304 -21.87613 -21.01665 -20.16153 -18.56908 -18.21635 -17.21478 -16.71501 -16.51205 -15.97900 -15.87109 -14.96984 -14.94135 -14.57531 -14.22017 -14.06863 -13.92238 -13.77410 -13.50810 -13.19583 -13.08863 -13.00119 -12.82786 -12.48611 -12.15814 -11.99125 -11.88619 -11.80714 -11.52624 -11.40582 -11.26446 -10.97644 -10.83953 -10.64138 -10.45167 -10.17573 -9.85259 -9.69811 -9.61653 -9.42006 -9.27693 -9.06082 -8.37468 -8.30796 -8.19786 -6.56209 -5.68571 -3.11851 1.14551 1.35520 3.06288 3.36776 3.44822 3.51722 3.52553 3.70064 4.07849 4.42597 4.58052 4.64625 4.71456 4.87163 4.99116 5.06096 5.24680 5.26142 5.29541 5.33249 5.39722 5.47064 5.48663 5.52430 5.58007 5.63096 5.74786 5.92688 5.97577 5.99081 6.06292 6.09780 6.19009 6.36012 6.42611 6.48707 6.51414 6.62257 6.74661 6.81048 6.95284 7.10853 7.11786 7.49918 7.77397 7.89223 8.17205 8.27397 8.55486 9.00099 9.30013 9.94482 10.50169 11.39223 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.004120 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.393685 B = 6794.984299 C = 8598.766720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.316 6.316 3 C 0.065 3.935 4 C -0.111 4.111 5 C -0.130 4.130 6 C 0.115 3.885 7 C -0.090 4.090 8 C 0.519 3.481 9 O -0.531 6.531 10 N -0.702 5.702 11 C 0.129 3.871 12 H 0.072 0.928 13 C 0.161 3.839 14 N -0.586 5.586 15 C -0.256 4.256 16 H 0.062 0.938 17 C 0.011 3.989 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.283 1.283 23 C 0.142 3.858 24 C -0.128 4.128 25 C -0.094 4.094 26 H 0.075 0.925 27 C -0.143 4.143 28 N -0.411 5.411 29 C 0.029 3.971 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.393 0.607 38 H 0.098 0.902 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.051 0.949 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.396 -12.122 0.567 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.228 6.228 3 C 0.018 3.982 4 C -0.137 4.137 5 C -0.150 4.150 6 C -0.024 4.024 7 C -0.131 4.131 8 C 0.304 3.696 9 O -0.407 6.407 10 N -0.353 5.353 11 C 0.023 3.977 12 H 0.090 0.910 13 C 0.034 3.966 14 N -0.309 5.309 15 C -0.386 4.386 16 H 0.080 0.920 17 C -0.189 4.189 18 N -0.540 5.540 19 Si 0.728 3.272 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.210 1.210 23 C 0.016 3.984 24 C -0.167 4.167 25 C -0.113 4.113 26 H 0.093 0.907 27 C -0.200 4.200 28 N -0.119 5.119 29 C -0.130 4.130 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.227 0.773 38 H 0.116 0.884 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.171 -11.979 -0.008 15.715 hybrid contribution -0.012 -0.683 1.113 1.306 sum 10.159 -12.662 1.105 16.271 Atomic orbital electron populations 1.23107 0.78068 1.04054 1.01898 1.86028 1.21620 1.26278 1.88882 1.20097 0.93303 0.85675 0.99117 1.20785 0.91567 0.98545 1.02830 1.21765 1.01064 0.91682 1.00492 1.20533 0.89235 0.94378 0.98214 1.20556 1.00346 0.91924 1.00283 1.19966 0.81853 0.82027 0.85786 1.90697 1.32554 1.70497 1.46935 1.45764 1.45777 1.13017 1.30746 1.21710 0.96223 0.91689 0.88104 0.90959 1.21191 0.91888 0.92705 0.90776 1.43956 1.42233 1.28721 1.15977 1.19003 0.94635 1.39020 0.85903 0.92044 1.24978 0.95694 1.01785 0.96402 1.69981 1.10856 1.47646 1.25531 0.86451 0.78410 0.78491 0.83875 1.21166 1.21751 1.20954 1.20925 0.88348 0.91097 0.98055 1.22075 0.99313 0.98331 0.97025 1.21309 0.95016 0.96593 0.98391 0.90655 1.21835 0.97314 1.00063 1.00814 1.67393 1.11489 1.26015 1.07040 1.22933 1.00565 0.86922 1.02611 0.92370 0.92244 0.88100 0.84267 0.84220 0.88058 0.87164 0.77275 0.88411 0.96064 0.93611 0.96599 0.92911 0.92944 0.92674 0.93221 0.93288 0.93029 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.82 101.05 0.99 1.20 16 2 O -0.32 -3.79 10.51 -19.46 -0.20 -4.00 16 3 C 0.07 0.89 6.71 -39.07 -0.26 0.63 16 4 C -0.11 -1.35 10.13 -39.14 -0.40 -1.75 16 5 C -0.13 -1.61 9.70 -39.47 -0.38 -1.99 16 6 C 0.12 1.83 5.76 -82.58 -0.48 1.36 16 7 C -0.09 -1.32 6.10 -29.04 -0.18 -1.50 16 8 C 0.52 9.83 7.73 -10.99 -0.08 9.74 16 9 O -0.53 -12.34 15.00 5.55 0.08 -12.26 16 10 N -0.70 -12.39 4.26 -53.69 -0.23 -12.61 16 11 C 0.13 2.47 2.24 -67.81 -0.15 2.32 16 12 H 0.07 1.47 7.58 -51.93 -0.39 1.07 16 13 C 0.16 3.93 4.90 -3.71 -0.02 3.91 16 14 N -0.59 -14.32 2.91 -172.31 -0.50 -14.82 16 15 C -0.26 -6.99 9.58 -15.06 -0.14 -7.14 16 16 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 17 C 0.01 0.31 4.92 -17.43 -0.09 0.22 16 18 N -0.90 -27.04 11.20 55.49 0.62 -26.42 16 19 Si 0.90 22.64 29.59 -169.99 -5.03 17.61 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.14 2.85 6.52 -3.71 -0.02 2.83 16 24 C -0.13 -2.01 5.20 -26.61 -0.14 -2.15 16 25 C -0.09 -1.48 2.48 -90.58 -0.22 -1.70 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 C -0.14 -1.82 9.05 37.16 0.34 -1.48 16 28 N -0.41 -7.68 9.21 -9.35 -0.09 -7.77 16 29 C 0.03 0.45 10.22 -17.38 -0.18 0.28 16 30 H 0.06 0.47 7.68 -51.93 -0.40 0.07 16 31 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.14 1.21 7.95 -52.48 -0.42 0.80 16 35 H 0.10 1.02 7.87 -51.93 -0.41 0.62 16 36 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.39 6.07 6.64 -40.82 -0.27 5.80 16 38 H 0.10 2.84 6.06 -51.93 -0.31 2.53 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.62 7.54 -51.93 -0.39 0.23 16 48 H 0.16 2.14 6.32 -52.49 -0.33 1.80 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -35.41 384.08 -8.40 -43.81 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.42 Total: 5.88 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.42 Total: 4.78 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.20 Total: -61.62 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.12 Total: -16.26 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.41 -8.40 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967941173.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.942 kcal (2) G-P(sol) polarization free energy of solvation -35.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds