Wall clock time and date at job start Tue Mar 31 2020 17:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35911 * 116.99744 * 2 1 4 4 C 1.39140 * 120.47383 * 180.02562 * 3 2 1 5 5 C 1.38538 * 118.37428 * 179.72336 * 4 3 2 6 6 C 1.38249 * 119.22258 * 0.49622 * 5 4 3 7 7 C 1.50697 * 119.56102 * 179.76888 * 6 5 4 8 8 C 1.50699 * 109.47391 * 124.72332 * 7 6 5 9 9 O 1.21283 * 119.99583 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99787 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99768 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.49536 * 324.93945 * 11 10 8 13 13 C 1.53193 * 109.49748 * 84.99907 * 11 10 8 14 14 N 1.46930 * 108.77112 * 65.34956 * 13 11 10 15 15 C 1.36940 * 120.63019 * 233.58305 * 14 13 11 16 16 H 1.08001 * 119.99585 * 151.84554 * 15 14 13 17 17 C 1.38812 * 119.99729 * 331.85067 * 15 14 13 18 18 N 1.31613 * 120.00454 * 343.06999 * 17 15 14 19 19 Si 1.86807 * 119.99638 * 163.07497 * 17 15 14 20 20 H 1.48497 * 109.47440 * 59.99429 * 19 17 15 21 21 H 1.48494 * 109.47156 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46966 * 299.99532 * 19 17 15 23 23 C 1.46928 * 118.73715 * 53.61004 * 14 13 11 24 24 C 1.53192 * 108.77556 * 306.38738 * 23 14 13 25 25 C 1.53039 * 109.52614 * 204.85744 * 11 10 8 26 26 H 1.09003 * 109.45865 * 181.39340 * 25 11 10 27 27 C 1.52997 * 109.45967 * 61.41761 * 25 11 10 28 28 N 1.31854 * 120.88346 * 359.49294 * 6 5 4 29 29 C 1.31835 * 121.78158 * 0.25345 * 28 6 5 30 30 H 1.09000 * 109.47053 * 300.00054 * 1 2 3 31 31 H 1.08992 * 109.47252 * 60.00289 * 1 2 3 32 32 H 1.09000 * 109.46753 * 179.97438 * 1 2 3 33 33 H 1.08003 * 120.81219 * 359.97438 * 4 3 2 34 34 H 1.08006 * 120.38755 * 180.26669 * 5 4 3 35 35 H 1.09003 * 109.46666 * 4.72368 * 7 6 5 36 36 H 1.08999 * 109.47005 * 244.73160 * 7 6 5 37 37 H 0.96999 * 120.00179 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.58946 * 305.56628 * 13 11 10 39 39 H 1.08996 * 109.58933 * 185.13833 * 13 11 10 40 40 H 0.97003 * 120.00156 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.58707 * 66.17774 * 23 14 13 42 42 H 1.09006 * 109.58416 * 186.59914 * 23 14 13 43 43 H 1.09002 * 109.49425 * 174.59034 * 24 23 14 44 44 H 1.08996 * 109.49499 * 294.68852 * 24 23 14 45 45 H 1.08998 * 109.47482 * 60.00068 * 27 25 11 46 46 H 1.08997 * 109.46954 * 180.02562 * 27 25 11 47 47 H 1.08998 * 109.47357 * 300.00073 * 27 25 11 48 48 H 1.07998 * 119.65745 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2954 -0.0005 5 6 4.0181 2.5520 -0.0064 6 6 3.2079 3.6722 -0.0010 7 6 3.8343 5.0428 -0.0021 8 6 3.3016 5.8377 -1.1662 9 8 2.4925 5.3404 -1.9205 10 7 3.7242 7.1013 -1.3691 11 6 3.2059 7.8743 -2.5005 12 1 3.0402 7.2106 -3.3491 13 6 1.8829 8.5370 -2.1038 14 7 2.1463 9.5230 -1.0468 15 6 1.4531 9.4826 0.1335 16 1 1.9064 9.8583 1.0390 17 6 0.1681 8.9588 0.1661 18 7 -0.5110 8.8112 -0.9516 19 14 -0.5974 8.4633 1.7965 20 1 -0.6699 9.6475 2.6895 21 1 -1.9658 7.9369 1.5611 22 1 0.2348 7.4121 2.4349 23 6 3.1671 10.5536 -1.2806 24 6 4.4757 9.8683 -1.6866 25 6 4.2175 8.9555 -2.8876 26 1 3.8201 9.5457 -3.7133 27 6 5.5293 8.2957 -3.3176 28 7 1.8944 3.5574 -0.0005 29 6 1.3002 2.3805 0.0000 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0433 0.4030 -0.0005 34 1 5.0932 2.6553 -0.0113 35 1 4.9164 4.9476 -0.0919 36 1 3.5907 5.5543 0.9291 37 1 4.3716 7.4989 -0.7660 38 1 1.1917 7.7800 -1.7332 39 1 1.4503 9.0369 -2.9703 40 1 -1.4092 8.4454 -0.9288 41 1 2.8392 11.2180 -2.0801 42 1 3.3232 11.1272 -0.3669 43 1 5.2137 10.6239 -1.9559 44 1 4.8496 9.2749 -0.8523 45 1 5.3459 7.6465 -4.1736 46 1 6.2500 9.0657 -3.5928 47 1 5.9266 7.7051 -2.4921 48 1 0.2216 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967941173.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:04 Heat of formation + Delta-G solvation = -40.760632 kcal Electronic energy + Delta-G solvation = -29741.214916 eV Core-core repulsion = 25796.138241 eV Total energy + Delta-G solvation = -3945.076675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.75086 -40.89247 -39.41652 -38.65895 -35.86709 -34.24323 -33.40971 -33.35736 -32.77116 -30.87327 -29.15915 -28.74233 -27.98613 -25.79742 -24.51602 -23.90096 -23.17881 -22.69442 -21.50234 -20.21421 -19.14844 -18.62499 -18.32464 -17.82048 -17.16159 -16.86691 -16.80165 -16.33501 -15.95129 -15.67268 -15.33834 -15.19499 -15.08611 -14.93673 -14.66426 -14.55985 -14.20678 -14.01933 -13.92444 -13.51873 -13.17374 -13.05658 -12.99781 -12.94684 -12.78817 -12.66739 -12.57860 -12.44436 -12.31976 -12.25555 -11.91887 -11.52107 -11.25367 -11.02541 -10.78517 -10.62358 -10.50431 -10.26667 -9.80715 -9.36142 -8.61830 -7.84585 -5.29440 0.11045 0.33861 1.38525 1.45124 1.47940 1.91720 2.20482 2.43857 2.49772 2.88518 3.32266 3.36562 3.64581 3.71704 3.73766 3.91480 3.99018 4.03982 4.15201 4.19049 4.29352 4.31985 4.39914 4.52036 4.56667 4.61148 4.65615 4.71436 4.73382 4.76169 4.87386 4.94760 4.99621 5.00160 5.10465 5.14807 5.20300 5.29150 5.31382 5.51656 5.52829 5.57023 5.62912 5.75620 5.85698 6.17727 6.40870 6.85237 7.11107 7.16537 7.58289 7.90632 8.41191 9.19969 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.004120 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.393685 B = 6794.984299 C = 8598.766720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.319 6.319 3 C 0.067 3.933 4 C -0.111 4.111 5 C -0.113 4.113 6 C 0.084 3.916 7 C -0.082 4.082 8 C 0.509 3.491 9 O -0.583 6.583 10 N -0.691 5.691 11 C 0.141 3.859 12 H 0.055 0.945 13 C 0.173 3.827 14 N -0.599 5.599 15 C -0.249 4.249 16 H 0.072 0.928 17 C -0.048 4.048 18 N -0.935 5.935 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.305 1.305 22 H -0.282 1.282 23 C 0.135 3.865 24 C -0.114 4.114 25 C -0.087 4.087 26 H 0.069 0.931 27 C -0.133 4.133 28 N -0.469 5.469 29 C 0.000 4.000 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.173 0.827 34 H 0.186 0.814 35 H 0.156 0.844 36 H 0.109 0.891 37 H 0.407 0.593 38 H 0.045 0.955 39 H -0.012 1.012 40 H 0.242 0.758 41 H 0.009 0.991 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.759 -12.831 1.706 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.232 6.232 3 C 0.019 3.981 4 C -0.137 4.137 5 C -0.132 4.132 6 C -0.055 4.055 7 C -0.122 4.122 8 C 0.296 3.704 9 O -0.462 6.462 10 N -0.343 5.343 11 C 0.035 3.965 12 H 0.073 0.927 13 C 0.046 3.954 14 N -0.322 5.322 15 C -0.379 4.379 16 H 0.089 0.911 17 C -0.243 4.243 18 N -0.581 5.581 19 Si 0.782 3.218 20 H -0.193 1.193 21 H -0.232 1.232 22 H -0.209 1.209 23 C 0.010 3.990 24 C -0.153 4.153 25 C -0.106 4.106 26 H 0.087 0.913 27 C -0.190 4.190 28 N -0.178 5.178 29 C -0.158 4.158 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.191 0.809 34 H 0.204 0.796 35 H 0.174 0.826 36 H 0.127 0.873 37 H 0.244 0.756 38 H 0.063 0.937 39 H 0.006 0.994 40 H 0.051 0.949 41 H 0.027 0.973 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 14.590 -12.657 1.164 19.350 hybrid contribution -1.407 -0.451 0.722 1.645 sum 13.182 -13.108 1.886 18.685 Atomic orbital electron populations 1.23360 0.76565 1.05986 1.01890 1.86025 1.23214 1.25402 1.88544 1.20235 0.94192 0.85433 0.98251 1.21277 0.91105 0.99902 1.01434 1.22180 1.02903 0.90336 0.97767 1.20918 0.88906 0.96019 0.99628 1.20642 1.03205 0.90713 0.97605 1.20868 0.80929 0.82319 0.86290 1.90677 1.34790 1.71638 1.49113 1.45658 1.45528 1.12687 1.30434 1.21327 0.94862 0.92273 0.88084 0.92678 1.20843 0.93804 0.91454 0.89346 1.44155 1.42839 1.30117 1.15092 1.19396 0.94327 1.36914 0.87287 0.91055 1.25681 0.96687 1.03090 0.98876 1.70167 1.10681 1.49725 1.27541 0.85545 0.76802 0.78465 0.80941 1.19335 1.23195 1.20884 1.21170 0.89166 0.90454 0.98252 1.21949 0.97235 0.98944 0.97163 1.21259 0.95635 0.95347 0.98396 0.91263 1.21740 0.95489 1.00654 1.01121 1.67274 1.13737 1.27811 1.09022 1.22983 1.00960 0.87427 1.04477 0.92086 0.92671 0.85118 0.80914 0.79647 0.82614 0.87293 0.75585 0.93685 0.99399 0.94857 0.97323 0.92350 0.89126 0.91412 0.93509 0.90665 0.91814 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.82 113.37 1.11 1.39 16 2 O -0.32 -7.39 10.51 -92.55 -0.97 -8.36 16 3 C 0.07 1.78 6.71 22.60 0.15 1.93 16 4 C -0.11 -2.42 10.13 22.56 0.23 -2.19 16 5 C -0.11 -2.43 9.70 22.34 0.22 -2.22 16 6 C 0.08 2.61 5.76 42.56 0.25 2.85 16 7 C -0.08 -2.24 6.10 29.10 0.18 -2.06 16 8 C 0.51 19.30 7.73 87.66 0.68 19.98 16 9 O -0.58 -28.39 15.00 -3.04 -0.05 -28.44 16 10 N -0.69 -23.79 4.26 -442.16 -1.88 -25.67 16 11 C 0.14 5.50 2.24 45.07 0.10 5.60 16 12 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 13 C 0.17 8.88 4.90 86.36 0.42 9.31 16 14 N -0.60 -29.69 2.91 -699.07 -2.04 -31.72 16 15 C -0.25 -13.77 9.58 84.03 0.81 -12.96 16 16 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 17 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 18 N -0.93 -59.86 11.20 21.65 0.24 -59.61 16 19 Si 0.95 48.15 29.59 68.60 2.03 50.18 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 22 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 23 C 0.13 5.21 6.52 86.36 0.56 5.78 16 24 C -0.11 -3.18 5.20 30.67 0.16 -3.02 16 25 C -0.09 -2.56 2.48 -10.77 -0.03 -2.58 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 C -0.13 -2.85 9.05 71.98 0.65 -2.20 16 28 N -0.47 -18.24 9.21 -183.50 -1.69 -19.93 16 29 C 0.00 -0.01 10.22 84.80 0.87 0.86 16 30 H 0.06 1.00 7.68 -2.39 -0.02 0.98 16 31 H 0.05 0.98 7.68 -2.39 -0.02 0.96 16 32 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.19 2.17 7.95 -2.91 -0.02 2.14 16 35 H 0.16 2.42 7.87 -2.39 -0.02 2.40 16 36 H 0.11 3.00 8.14 -2.39 -0.02 2.99 16 37 H 0.41 11.48 6.64 -92.71 -0.62 10.86 16 38 H 0.04 2.81 6.06 -2.39 -0.01 2.79 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.24 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.06 2.18 7.93 -2.38 -0.02 2.16 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.07 1.76 6.40 -2.39 -0.02 1.74 16 45 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.06 1.23 7.54 -2.39 -0.02 1.22 16 48 H 0.15 4.65 6.32 -2.91 -0.02 4.63 16 Total: -1.00 -85.33 384.08 2.77 -82.56 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.35 Total: 22.94 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 6.77 Total: 18.05 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -5.36 Total: -136.93 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.02 Total: -36.79 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -85.33 2.77 -82.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967941173.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.798 kcal (2) G-P(sol) polarization free energy of solvation -85.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds