Wall clock time and date at job start Tue Mar 31 2020 17:12:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35911 * 117.00104 * 2 1
4 4 C 1.39139 * 120.47213 * 0.02800 * 3 2 1
5 5 C 1.38541 * 118.37220 * 179.97438 * 4 3 2
6 6 C 1.38251 * 119.22329 * 359.97438 * 5 4 3
7 7 N 1.31848 * 120.88311 * 359.74659 * 6 5 4
8 8 C 1.31845 * 121.78314 * 0.52574 * 7 6 5
9 9 C 1.50703 * 119.65750 * 179.75289 * 8 7 6
10 10 C 1.50691 * 109.47143 * 269.72567 * 9 8 7
11 11 O 1.21285 * 120.00284 * 0.02562 * 10 9 8
12 12 N 1.34775 * 120.00213 * 180.02562 * 10 9 8
13 13 C 1.46499 * 120.00617 * 179.97438 * 12 10 9
14 14 H 1.09005 * 109.49589 * 35.06380 * 13 12 10
15 15 C 1.53194 * 109.49991 * 275.00470 * 13 12 10
16 16 N 1.46923 * 108.77508 * 294.64969 * 15 13 12
17 17 C 1.36934 * 120.63543 * 126.37021 * 16 15 13
18 18 H 1.08003 * 119.99164 * 332.79102 * 17 16 15
19 19 C 1.38806 * 120.00254 * 153.06831 * 17 16 15
20 20 N 1.31620 * 119.99756 * 159.13051 * 19 17 16
21 21 Si 1.86797 * 120.00014 * 339.13222 * 19 17 16
22 22 H 1.48500 * 109.47157 * 93.09435 * 21 19 17
23 23 H 1.48499 * 109.47219 * 213.09568 * 21 19 17
24 24 H 1.48498 * 109.46981 * 333.09353 * 21 19 17
25 25 C 1.46930 * 118.73533 * 306.64194 * 16 15 13
26 26 C 1.52756 * 109.00914 * 53.31004 * 25 16 15
27 27 C 1.53034 * 109.52794 * 155.14740 * 13 12 10
28 28 H 1.09002 * 109.45957 * 178.61284 * 27 13 12
29 29 C 1.53006 * 109.45830 * 298.58524 * 27 13 12
30 30 H 1.09003 * 109.47118 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.46985 * 299.99625 * 1 2 3
32 32 H 1.08996 * 109.47352 * 60.00136 * 1 2 3
33 33 H 1.07998 * 120.81445 * 359.94466 * 4 3 2
34 34 H 1.07996 * 120.38841 * 179.97438 * 5 4 3
35 35 H 1.07994 * 119.56136 * 180.02562 * 6 5 4
36 36 H 1.09002 * 109.46932 * 149.72446 * 9 8 7
37 37 H 1.08998 * 109.46856 * 29.72847 * 9 8 7
38 38 H 0.97005 * 119.99661 * 0.02562 * 12 10 9
39 39 H 1.09003 * 109.58662 * 174.85949 * 15 13 12
40 40 H 1.09002 * 109.70356 * 54.50227 * 15 13 12
41 41 H 0.97000 * 119.99511 * 180.02562 * 20 19 17
42 42 H 1.08999 * 109.58564 * 173.14640 * 25 16 15
43 43 H 1.08998 * 109.58600 * 293.56952 * 25 16 15
44 44 H 1.08999 * 109.56743 * 185.55259 * 26 25 16
45 45 H 1.08996 * 109.38799 * 65.51495 * 26 25 16
46 46 H 1.08995 * 109.47274 * 60.00140 * 29 27 13
47 47 H 1.09006 * 109.47002 * 180.02562 * 29 27 13
48 48 H 1.08999 * 109.47220 * 299.99850 * 29 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0461 1.2110 0.0000
4 6 1.2979 2.3841 0.0006
5 6 1.9717 3.5946 0.0011
6 6 3.3542 3.5976 0.0016
7 7 4.0334 2.4675 0.0065
8 6 3.4305 1.2950 0.0009
9 6 4.2542 0.0329 0.0013
10 6 4.5293 -0.3878 -1.4192
11 8 4.0993 0.2723 -2.3414
12 7 5.2532 -1.4977 -1.6652
13 6 5.5202 -1.9072 -3.0462
14 1 5.6478 -1.0223 -3.6698
15 6 4.3436 -2.7365 -3.5703
16 7 4.2667 -3.9865 -2.8019
17 6 3.1005 -4.3571 -2.1872
18 1 2.3912 -3.6043 -1.8763
19 6 2.8326 -5.6997 -1.9587
20 7 1.9596 -6.0491 -1.0377
21 14 3.7113 -7.0107 -2.9579
22 1 4.9287 -7.4535 -2.2319
23 1 2.8055 -8.1702 -3.1586
24 1 4.0982 -6.4506 -4.2777
25 6 5.4666 -4.8282 -2.7004
26 6 6.6291 -3.9782 -2.1908
27 6 6.7952 -2.7524 -3.0918
28 1 6.9792 -3.0770 -4.1159
29 6 7.9789 -1.9160 -2.6015
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8899
33 1 0.2184 2.3518 0.0002
34 1 1.4234 4.5250 0.0012
35 1 3.8850 4.5381 0.0024
36 1 3.7073 -0.7577 0.5151
37 1 5.1979 0.2152 0.5155
38 1 5.5968 -2.0259 -0.9277
39 1 4.4984 -2.9648 -4.6248
40 1 3.4165 -2.1761 -3.4499
41 1 1.7727 -6.9874 -0.8778
42 1 5.2813 -5.6463 -2.0043
43 1 5.7148 -5.2306 -3.6825
44 1 7.5460 -4.5674 -2.2054
45 1 6.4208 -3.6546 -1.1710
46 1 7.7948 -1.5910 -1.5776
47 1 8.8872 -2.5177 -2.6343
48 1 8.0981 -1.0435 -3.2439
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000968037438.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:12:17
Heat of formation + Delta-G solvation = -13.207591 kcal
Electronic energy + Delta-G solvation = -30143.738329 eV
Core-core repulsion = 26199.856444 eV
Total energy + Delta-G solvation = -3943.881885 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.77920 -39.58710 -38.07769 -37.64181 -34.31524 -33.08574 -32.70110 -31.41503
-31.35012 -29.82016 -28.15408 -27.45261 -27.22218 -23.89550 -23.00833 -22.85169
-22.34319 -21.26123 -20.33836 -18.79010 -18.05875 -17.11548 -17.06471 -16.56006
-16.24971 -15.67279 -15.28279 -15.20913 -14.76757 -14.34345 -14.08511 -13.94814
-13.74933 -13.66597 -13.44604 -13.42918 -13.17758 -12.93262 -12.46213 -12.29921
-12.20997 -11.90234 -11.79787 -11.50009 -11.42241 -11.37353 -11.32670 -11.18080
-10.63753 -10.56628 -10.18383 -9.86451 -9.79993 -9.67806 -9.57381 -9.40725
-9.30847 -8.76409 -8.35887 -8.27451 -6.90227 -5.91491 -3.25810 1.10191
1.29784 3.17221 3.25447 3.32600 3.50192 3.53294 3.55202 3.96207
4.34243 4.55639 4.60872 4.70400 4.96064 4.99668 5.04115 5.12901
5.18154 5.19010 5.22371 5.24939 5.30315 5.46893 5.47601 5.58219
5.60633 5.79540 5.80606 5.87471 5.92352 6.00614 6.04503 6.08895
6.13946 6.16793 6.28625 6.38618 6.43738 6.45430 6.59395 6.65547
6.75518 6.84215 7.11042 7.25475 7.99554 8.01332 8.06047 8.37354
8.76008 8.98899 9.76598 10.13913 11.24636
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.012980 B = 0.004163 C = 0.003332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2156.677302 B = 6724.012757 C = 8400.994079
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.297 6.297
3 C 0.098 3.902
4 C -0.169 4.169
5 C -0.137 4.137
6 C 0.056 3.944
7 N -0.441 5.441
8 C 0.131 3.869
9 C -0.088 4.088
10 C 0.528 3.472
11 O -0.548 6.548
12 N -0.702 5.702
13 C 0.136 3.864
14 H 0.080 0.920
15 C 0.138 3.862
16 N -0.601 5.601
17 C -0.249 4.249
18 H 0.084 0.916
19 C 0.022 3.978
20 N -0.910 5.910
21 Si 0.882 3.118
22 H -0.290 1.290
23 H -0.306 1.306
24 H -0.272 1.272
25 C 0.123 3.877
26 C -0.130 4.130
27 C -0.094 4.094
28 H 0.077 0.923
29 C -0.143 4.143
30 H 0.108 0.892
31 H 0.053 0.947
32 H 0.055 0.945
33 H 0.138 0.862
34 H 0.134 0.866
35 H 0.155 0.845
36 H 0.116 0.884
37 H 0.107 0.893
38 H 0.399 0.601
39 H 0.029 0.971
40 H 0.068 0.932
41 H 0.261 0.739
42 H 0.073 0.927
43 H 0.024 0.976
44 H 0.057 0.943
45 H 0.062 0.938
46 H 0.054 0.946
47 H 0.051 0.949
48 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.186 15.056 3.464 16.006
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.208 6.208
3 C 0.050 3.950
4 C -0.195 4.195
5 C -0.157 4.157
6 C -0.100 4.100
7 N -0.150 5.150
8 C -0.009 4.009
9 C -0.129 4.129
10 C 0.314 3.686
11 O -0.426 6.426
12 N -0.353 5.353
13 C 0.030 3.970
14 H 0.098 0.902
15 C 0.011 3.989
16 N -0.324 5.324
17 C -0.378 4.378
18 H 0.102 0.898
19 C -0.176 4.176
20 N -0.553 5.553
21 Si 0.713 3.287
22 H -0.218 1.218
23 H -0.234 1.234
24 H -0.197 1.197
25 C -0.003 4.003
26 C -0.169 4.169
27 C -0.113 4.113
28 H 0.096 0.904
29 C -0.201 4.201
30 H 0.127 0.873
31 H 0.071 0.929
32 H 0.073 0.927
33 H 0.156 0.844
34 H 0.152 0.848
35 H 0.173 0.827
36 H 0.134 0.866
37 H 0.125 0.875
38 H 0.235 0.765
39 H 0.046 0.954
40 H 0.086 0.914
41 H 0.070 0.930
42 H 0.091 0.909
43 H 0.042 0.958
44 H 0.076 0.924
45 H 0.080 0.920
46 H 0.073 0.927
47 H 0.070 0.930
48 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 4.734 15.219 2.877 16.196
hybrid contribution -0.725 -1.012 -0.202 1.261
sum 4.009 14.207 2.675 15.003
Atomic orbital electron populations
1.23140 0.78001 1.04923 1.00749 1.86225 1.21632 1.25276 1.87638
1.19914 0.93194 0.85482 0.96449 1.21657 1.00711 0.92152 1.05014
1.21915 0.95743 0.98055 0.99945 1.22513 0.91409 0.96203 0.99917
1.67426 1.40057 0.97502 1.09991 1.19935 0.87852 0.93264 0.99895
1.20446 1.01362 0.94583 0.96471 1.20061 0.77767 0.80426 0.90365
1.90658 1.51178 1.54565 1.46186 1.45791 1.54412 1.26142 1.08927
1.21458 0.95462 0.96984 0.83076 0.90196 1.21325 0.96848 0.87543
0.93201 1.44298 1.07550 1.21660 1.58936 1.18901 0.96302 0.91966
1.30594 0.89810 1.25243 0.97124 0.96926 0.98328 1.69839 1.37229
1.16676 1.31594 0.86976 0.77819 0.81791 0.82149 1.21820 1.23408
1.19698 1.21274 0.86701 0.93967 0.98311 1.22011 0.99040 0.96551
0.99322 1.21314 0.93860 0.95649 1.00503 0.90426 1.21828 0.97493
0.99447 1.01312 0.87328 0.92888 0.92680 0.84414 0.84798 0.82738
0.86636 0.87529 0.76532 0.95368 0.91367 0.92962 0.90922 0.95824
0.92430 0.91973 0.92727 0.92986 0.93042
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.32 9.83 101.05 0.99 1.31 16
2 O -0.30 -4.71 9.55 -19.46 -0.19 -4.90 16
3 C 0.10 1.49 6.67 -39.08 -0.26 1.23 16
4 C -0.17 -2.06 9.14 -39.14 -0.36 -2.42 16
5 C -0.14 -1.48 10.11 -39.46 -0.40 -1.88 16
6 C 0.06 0.69 11.18 -17.54 -0.20 0.49 16
7 N -0.44 -6.69 10.27 -9.35 -0.10 -6.79 16
8 C 0.13 2.08 5.29 -82.41 -0.44 1.65 16
9 C -0.09 -1.34 5.77 -29.04 -0.17 -1.50 16
10 C 0.53 9.43 7.79 -10.99 -0.09 9.35 16
11 O -0.55 -11.62 15.70 5.55 0.09 -11.54 16
12 N -0.70 -11.66 4.25 -53.69 -0.23 -11.89 16
13 C 0.14 2.32 2.24 -67.81 -0.15 2.17 16
14 H 0.08 1.39 7.58 -51.93 -0.39 0.99 16
15 C 0.14 2.83 6.12 -3.71 -0.02 2.81 16
16 N -0.60 -13.88 2.70 -172.58 -0.47 -14.35 16
17 C -0.25 -6.84 10.03 -15.06 -0.15 -6.99 16
18 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16
19 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16
20 N -0.91 -27.43 13.97 55.49 0.78 -26.66 16
21 Si 0.88 22.21 24.35 -169.99 -4.14 18.07 16
22 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16
23 H -0.31 -7.92 7.11 56.52 0.40 -7.51 16
24 H -0.27 -6.78 6.64 56.52 0.38 -6.41 16
25 C 0.12 2.57 4.18 -3.93 -0.02 2.55 16
26 C -0.13 -2.10 5.18 -26.84 -0.14 -2.24 16
27 C -0.09 -1.38 2.48 -90.58 -0.22 -1.61 16
28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16
29 C -0.14 -1.75 9.05 37.16 0.34 -1.41 16
30 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16
31 H 0.05 0.48 7.70 -51.93 -0.40 0.08 16
32 H 0.05 0.59 7.70 -51.93 -0.40 0.19 16
33 H 0.14 1.31 6.45 -52.49 -0.34 0.97 16
34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16
35 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16
36 H 0.12 1.73 7.52 -51.93 -0.39 1.34 16
37 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16
38 H 0.40 6.16 6.64 -40.82 -0.27 5.88 16
39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.07 1.56 7.93 -51.93 -0.41 1.15 16
41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
42 H 0.07 1.67 4.49 -51.93 -0.23 1.44 16
43 H 0.02 0.50 7.08 -51.93 -0.37 0.13 16
44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
45 H 0.06 1.00 6.41 -51.93 -0.33 0.67 16
46 H 0.05 0.66 7.54 -51.93 -0.39 0.26 16
47 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
LS Contribution 377.95 15.07 5.70 5.70
Total: -1.00 -34.38 377.95 -7.27 -41.65
By element:
Atomic # 1 Polarization: 14.00 SS G_CDS: -7.35 Total: 6.66 kcal
Atomic # 6 Polarization: 5.41 SS G_CDS: -1.37 Total: 4.04 kcal
Atomic # 7 Polarization: -59.67 SS G_CDS: -0.01 Total: -59.68 kcal
Atomic # 8 Polarization: -16.34 SS G_CDS: -0.10 Total: -16.44 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -34.38 -7.27 -41.65 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000968037438.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.447 kcal
(2) G-P(sol) polarization free energy of solvation -34.381 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.935 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.208 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds