Wall clock time and date at job start Tue Mar 31 2020 17:12:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35911 * 117.00104 * 2 1
4 4 C 1.39139 * 120.47213 * 0.02800 * 3 2 1
5 5 C 1.38541 * 118.37220 * 179.97438 * 4 3 2
6 6 C 1.38251 * 119.22329 * 359.97438 * 5 4 3
7 7 N 1.31848 * 120.88311 * 359.74659 * 6 5 4
8 8 C 1.31845 * 121.78314 * 0.52574 * 7 6 5
9 9 C 1.50703 * 119.65750 * 179.75289 * 8 7 6
10 10 C 1.50691 * 109.47143 * 269.72567 * 9 8 7
11 11 O 1.21285 * 120.00284 * 0.02562 * 10 9 8
12 12 N 1.34775 * 120.00213 * 180.02562 * 10 9 8
13 13 C 1.46499 * 120.00617 * 179.97438 * 12 10 9
14 14 H 1.09005 * 109.49589 * 35.06380 * 13 12 10
15 15 C 1.53194 * 109.49991 * 275.00470 * 13 12 10
16 16 N 1.46923 * 108.77508 * 294.64969 * 15 13 12
17 17 C 1.36934 * 120.63543 * 126.37021 * 16 15 13
18 18 H 1.08003 * 119.99164 * 332.79102 * 17 16 15
19 19 C 1.38806 * 120.00254 * 153.06831 * 17 16 15
20 20 N 1.31620 * 119.99756 * 159.13051 * 19 17 16
21 21 Si 1.86797 * 120.00014 * 339.13222 * 19 17 16
22 22 H 1.48500 * 109.47157 * 93.09435 * 21 19 17
23 23 H 1.48499 * 109.47219 * 213.09568 * 21 19 17
24 24 H 1.48498 * 109.46981 * 333.09353 * 21 19 17
25 25 C 1.46930 * 118.73533 * 306.64194 * 16 15 13
26 26 C 1.52756 * 109.00914 * 53.31004 * 25 16 15
27 27 C 1.53034 * 109.52794 * 155.14740 * 13 12 10
28 28 H 1.09002 * 109.45957 * 178.61284 * 27 13 12
29 29 C 1.53006 * 109.45830 * 298.58524 * 27 13 12
30 30 H 1.09003 * 109.47118 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.46985 * 299.99625 * 1 2 3
32 32 H 1.08996 * 109.47352 * 60.00136 * 1 2 3
33 33 H 1.07998 * 120.81445 * 359.94466 * 4 3 2
34 34 H 1.07996 * 120.38841 * 179.97438 * 5 4 3
35 35 H 1.07994 * 119.56136 * 180.02562 * 6 5 4
36 36 H 1.09002 * 109.46932 * 149.72446 * 9 8 7
37 37 H 1.08998 * 109.46856 * 29.72847 * 9 8 7
38 38 H 0.97005 * 119.99661 * 0.02562 * 12 10 9
39 39 H 1.09003 * 109.58662 * 174.85949 * 15 13 12
40 40 H 1.09002 * 109.70356 * 54.50227 * 15 13 12
41 41 H 0.97000 * 119.99511 * 180.02562 * 20 19 17
42 42 H 1.08999 * 109.58564 * 173.14640 * 25 16 15
43 43 H 1.08998 * 109.58600 * 293.56952 * 25 16 15
44 44 H 1.08999 * 109.56743 * 185.55259 * 26 25 16
45 45 H 1.08996 * 109.38799 * 65.51495 * 26 25 16
46 46 H 1.08995 * 109.47274 * 60.00140 * 29 27 13
47 47 H 1.09006 * 109.47002 * 180.02562 * 29 27 13
48 48 H 1.08999 * 109.47220 * 299.99850 * 29 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0461 1.2110 0.0000
4 6 1.2979 2.3841 0.0006
5 6 1.9717 3.5946 0.0011
6 6 3.3542 3.5976 0.0016
7 7 4.0334 2.4675 0.0065
8 6 3.4305 1.2950 0.0009
9 6 4.2542 0.0329 0.0013
10 6 4.5293 -0.3878 -1.4192
11 8 4.0993 0.2723 -2.3414
12 7 5.2532 -1.4977 -1.6652
13 6 5.5202 -1.9072 -3.0462
14 1 5.6478 -1.0223 -3.6698
15 6 4.3436 -2.7365 -3.5703
16 7 4.2667 -3.9865 -2.8019
17 6 3.1005 -4.3571 -2.1872
18 1 2.3912 -3.6043 -1.8763
19 6 2.8326 -5.6997 -1.9587
20 7 1.9596 -6.0491 -1.0377
21 14 3.7113 -7.0107 -2.9579
22 1 4.9287 -7.4535 -2.2319
23 1 2.8055 -8.1702 -3.1586
24 1 4.0982 -6.4506 -4.2777
25 6 5.4666 -4.8282 -2.7004
26 6 6.6291 -3.9782 -2.1908
27 6 6.7952 -2.7524 -3.0918
28 1 6.9792 -3.0770 -4.1159
29 6 7.9789 -1.9160 -2.6015
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8899
33 1 0.2184 2.3518 0.0002
34 1 1.4234 4.5250 0.0012
35 1 3.8850 4.5381 0.0024
36 1 3.7073 -0.7577 0.5151
37 1 5.1979 0.2152 0.5155
38 1 5.5968 -2.0259 -0.9277
39 1 4.4984 -2.9648 -4.6248
40 1 3.4165 -2.1761 -3.4499
41 1 1.7727 -6.9874 -0.8778
42 1 5.2813 -5.6463 -2.0043
43 1 5.7148 -5.2306 -3.6825
44 1 7.5460 -4.5674 -2.2054
45 1 6.4208 -3.6546 -1.1710
46 1 7.7948 -1.5910 -1.5776
47 1 8.8872 -2.5177 -2.6343
48 1 8.0981 -1.0435 -3.2439
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000968037438.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:12:16
Heat of formation + Delta-G solvation = -37.794781 kcal
Electronic energy + Delta-G solvation = -30144.804510 eV
Core-core repulsion = 26199.856444 eV
Total energy + Delta-G solvation = -3944.948066 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.85133 -40.97850 -39.27295 -38.99574 -36.04755 -34.29466 -34.01857 -33.34787
-32.44524 -31.26366 -29.39849 -28.79749 -28.30954 -25.60726 -24.42011 -23.83267
-23.60172 -22.88360 -21.62367 -20.34131 -19.07406 -18.72897 -18.18551 -18.14332
-17.37220 -17.17809 -16.74686 -16.57122 -16.19017 -15.56448 -15.34908 -15.31435
-15.17320 -14.94223 -14.93002 -14.74638 -14.31252 -14.22054 -14.02347 -13.78282
-13.59715 -13.24857 -13.05867 -12.99808 -12.80681 -12.62308 -12.37742 -12.33470
-12.32190 -12.19039 -11.82275 -11.54983 -11.35748 -11.13928 -10.95899 -10.69828
-10.59188 -10.56833 -9.97567 -9.32057 -8.83874 -8.12401 -5.43276 0.11409
0.31145 1.30717 1.43675 1.52380 1.75476 2.25425 2.33148 2.43871
2.87311 3.09951 3.30961 3.34631 3.64828 3.77377 3.82747 3.92216
4.00294 4.04332 4.08727 4.24823 4.29634 4.31329 4.35326 4.47834
4.49586 4.54894 4.57349 4.66250 4.71498 4.73830 4.82781 4.87325
4.97597 5.01587 5.03826 5.07593 5.11885 5.16512 5.22003 5.40774
5.49652 5.53385 5.69418 5.90310 6.15348 6.25742 6.67360 6.95044
7.00767 7.36574 7.65968 8.05410 9.07613
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.012980 B = 0.004163 C = 0.003332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2156.677302 B = 6724.012757 C = 8400.994079
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 O -0.332 6.332
3 C 0.071 3.929
4 C -0.170 4.170
5 C -0.125 4.125
6 C 0.048 3.952
7 N -0.463 5.463
8 C 0.098 3.902
9 C -0.081 4.081
10 C 0.524 3.476
11 O -0.585 6.585
12 N -0.696 5.696
13 C 0.143 3.857
14 H 0.080 0.920
15 C 0.138 3.862
16 N -0.610 5.610
17 C -0.236 4.236
18 H 0.039 0.961
19 C -0.032 4.032
20 N -0.956 5.956
21 Si 0.948 3.052
22 H -0.269 1.269
23 H -0.316 1.316
24 H -0.265 1.265
25 C 0.116 3.884
26 C -0.122 4.122
27 C -0.085 4.085
28 H 0.089 0.911
29 C -0.136 4.136
30 H 0.100 0.900
31 H 0.081 0.919
32 H 0.063 0.937
33 H 0.164 0.836
34 H 0.177 0.823
35 H 0.188 0.812
36 H 0.108 0.892
37 H 0.129 0.871
38 H 0.406 0.594
39 H 0.039 0.961
40 H 0.031 0.969
41 H 0.260 0.740
42 H 0.051 0.949
43 H 0.032 0.968
44 H 0.091 0.909
45 H 0.060 0.940
46 H 0.054 0.946
47 H 0.074 0.926
48 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.483 16.384 3.120 17.895
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 O -0.244 6.244
3 C 0.023 3.977
4 C -0.196 4.196
5 C -0.144 4.144
6 C -0.109 4.109
7 N -0.173 5.173
8 C -0.040 4.040
9 C -0.122 4.122
10 C 0.311 3.689
11 O -0.466 6.466
12 N -0.347 5.347
13 C 0.036 3.964
14 H 0.098 0.902
15 C 0.012 3.988
16 N -0.334 5.334
17 C -0.366 4.366
18 H 0.057 0.943
19 C -0.227 4.227
20 N -0.603 5.603
21 Si 0.778 3.222
22 H -0.196 1.196
23 H -0.246 1.246
24 H -0.190 1.190
25 C -0.008 4.008
26 C -0.161 4.161
27 C -0.104 4.104
28 H 0.107 0.893
29 C -0.193 4.193
30 H 0.118 0.882
31 H 0.100 0.900
32 H 0.082 0.918
33 H 0.181 0.819
34 H 0.195 0.805
35 H 0.205 0.795
36 H 0.126 0.874
37 H 0.147 0.853
38 H 0.242 0.758
39 H 0.057 0.943
40 H 0.050 0.950
41 H 0.069 0.931
42 H 0.070 0.930
43 H 0.050 0.950
44 H 0.109 0.891
45 H 0.079 0.921
46 H 0.073 0.927
47 H 0.093 0.907
48 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 7.090 16.544 2.532 18.176
hybrid contribution -1.542 -1.264 -0.100 1.996
sum 5.548 15.280 2.432 16.437
Atomic orbital electron populations
1.23308 0.76473 1.05047 1.02528 1.86160 1.23530 1.26539 1.88189
1.20169 0.93491 0.86164 0.97838 1.22060 1.02059 0.91662 1.03848
1.22395 0.95464 0.99132 0.97416 1.23202 0.92564 0.96469 0.98666
1.67404 1.40992 0.98035 1.10872 1.20004 0.88461 0.93635 1.01946
1.20383 1.02442 0.94716 0.94610 1.20565 0.76962 0.80189 0.91149
1.90620 1.52611 1.55837 1.47527 1.45788 1.53941 1.25813 1.09121
1.21353 0.95245 0.96694 0.83064 0.90248 1.21362 0.96982 0.86709
0.93755 1.44315 1.07218 1.22651 1.59224 1.18677 0.97179 0.91047
1.29664 0.94347 1.25821 0.98631 0.98960 0.99258 1.69974 1.39839
1.16947 1.33506 0.85899 0.77156 0.78472 0.80712 1.19590 1.24570
1.18988 1.21386 0.87132 0.93952 0.98359 1.21926 0.98208 0.96711
0.99217 1.21280 0.93283 0.94819 1.01052 0.89278 1.21753 0.96862
0.99423 1.01244 0.88165 0.90034 0.91834 0.81868 0.80531 0.79543
0.87412 0.85254 0.75756 0.94269 0.95032 0.93138 0.93041 0.94969
0.89088 0.92089 0.92679 0.90745 0.92612
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.51 9.83 113.37 1.11 1.62 16
2 O -0.33 -11.22 9.55 -92.55 -0.88 -12.10 16
3 C 0.07 2.22 6.67 22.60 0.15 2.38 16
4 C -0.17 -3.94 9.14 22.56 0.21 -3.73 16
5 C -0.12 -2.36 10.11 22.35 0.23 -2.14 16
6 C 0.05 1.08 11.18 84.69 0.95 2.03 16
7 N -0.46 -13.89 10.27 -183.51 -1.88 -15.77 16
8 C 0.10 3.21 5.29 42.67 0.23 3.43 16
9 C -0.08 -2.57 5.77 29.10 0.17 -2.40 16
10 C 0.52 19.38 7.79 87.65 0.68 20.07 16
11 O -0.59 -25.83 15.70 -3.04 -0.05 -25.88 16
12 N -0.70 -23.31 4.25 -442.18 -1.88 -25.20 16
13 C 0.14 4.78 2.24 45.07 0.10 4.88 16
14 H 0.08 2.72 7.58 -2.38 -0.02 2.70 16
15 C 0.14 5.79 6.12 86.36 0.53 6.32 16
16 N -0.61 -28.44 2.70 -699.93 -1.89 -30.32 16
17 C -0.24 -13.49 10.03 84.03 0.84 -12.65 16
18 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16
19 C -0.03 -1.88 5.23 84.86 0.44 -1.43 16
20 N -0.96 -59.90 13.97 21.65 0.30 -59.59 16
21 Si 0.95 46.39 24.35 68.60 1.67 48.06 16
22 H -0.27 -12.19 6.62 99.48 0.66 -11.53 16
23 H -0.32 -15.95 7.11 99.48 0.71 -15.24 16
24 H -0.27 -12.54 6.64 99.48 0.66 -11.88 16
25 C 0.12 4.63 4.18 86.22 0.36 4.99 16
26 C -0.12 -3.57 5.18 30.53 0.16 -3.41 16
27 C -0.09 -2.26 2.48 -10.77 -0.03 -2.28 16
28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16
29 C -0.14 -2.79 9.05 71.98 0.65 -2.14 16
30 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16
31 H 0.08 1.46 7.70 -2.39 -0.02 1.44 16
32 H 0.06 1.39 7.70 -2.39 -0.02 1.37 16
33 H 0.16 2.77 6.45 -2.91 -0.02 2.75 16
34 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16
35 H 0.19 2.77 8.06 -2.91 -0.02 2.74 16
36 H 0.11 3.49 7.52 -2.39 -0.02 3.48 16
37 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16
38 H 0.41 12.42 6.64 -92.70 -0.62 11.81 16
39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16
40 H 0.03 1.52 7.93 -2.39 -0.02 1.50 16
41 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16
42 H 0.05 2.28 4.49 -2.39 -0.01 2.27 16
43 H 0.03 1.25 7.08 -2.39 -0.02 1.23 16
44 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16
45 H 0.06 1.82 6.41 -2.39 -0.02 1.80 16
46 H 0.05 1.14 7.54 -2.39 -0.02 1.12 16
47 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16
48 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16
Total: -1.00 -79.16 377.95 2.43 -76.73
By element:
Atomic # 1 Polarization: 28.28 SS G_CDS: 0.26 Total: 28.54 kcal
Atomic # 6 Polarization: 8.75 SS G_CDS: 6.78 Total: 15.53 kcal
Atomic # 7 Polarization: -125.53 SS G_CDS: -5.35 Total: -130.88 kcal
Atomic # 8 Polarization: -37.05 SS G_CDS: -0.93 Total: -37.98 kcal
Atomic # 14 Polarization: 46.39 SS G_CDS: 1.67 Total: 48.06 kcal
Total: -79.16 2.43 -76.73 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000968037438.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.935 kcal
(2) G-P(sol) polarization free energy of solvation -79.160 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.225 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.730 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds