Wall clock time and date at job start Tue Mar 31 2020 17:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35910 * 117.00073 * 2 1 4 4 C 1.39142 * 120.47500 * 0.26087 * 3 2 1 5 5 C 1.38540 * 118.37704 * 180.26124 * 4 3 2 6 6 C 1.38252 * 119.21906 * 359.74495 * 5 4 3 7 7 N 1.31851 * 120.88694 * 359.97438 * 6 5 4 8 8 C 1.31845 * 121.78189 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.65790 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46746 * 90.00244 * 9 8 7 11 11 O 1.21276 * 119.99894 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99726 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00052 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.49444 * 324.94389 * 13 12 10 15 15 C 1.53195 * 109.49512 * 85.00310 * 13 12 10 16 16 N 1.46930 * 108.77343 * 174.58701 * 15 13 12 17 17 C 1.36934 * 120.62888 * 126.41484 * 16 15 13 18 18 H 1.08007 * 120.00219 * 331.82233 * 17 16 15 19 19 C 1.38816 * 120.00026 * 151.82453 * 17 16 15 20 20 N 1.31612 * 119.99500 * 343.07801 * 19 17 16 21 21 Si 1.86794 * 120.00031 * 163.07977 * 19 17 16 22 22 H 1.48504 * 109.47187 * 59.99600 * 21 19 17 23 23 H 1.48497 * 109.47306 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47353 * 299.99978 * 21 19 17 25 25 C 1.46921 * 118.74109 * 306.39477 * 16 15 13 26 26 C 1.53199 * 108.77747 * 53.60549 * 25 16 15 27 27 C 1.53035 * 109.50026 * 204.84389 * 13 12 10 28 28 H 1.08998 * 109.46056 * 298.70601 * 27 13 12 29 29 C 1.53000 * 109.45937 * 58.66207 * 27 13 12 30 30 H 1.09003 * 109.47534 * 59.99736 * 1 2 3 31 31 H 1.09000 * 109.47307 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47054 * 299.99382 * 1 2 3 33 33 H 1.08002 * 120.81008 * 0.02562 * 4 3 2 34 34 H 1.07995 * 120.38860 * 179.76888 * 5 4 3 35 35 H 1.07996 * 119.55758 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47355 * 330.00505 * 9 8 7 37 37 H 1.08998 * 109.46857 * 210.00101 * 9 8 7 38 38 H 0.97004 * 120.00140 * 0.02562 * 12 10 9 39 39 H 1.08994 * 109.58693 * 54.80218 * 15 13 12 40 40 H 1.08996 * 109.70414 * 294.44802 * 15 13 12 41 41 H 0.97002 * 119.99590 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.58734 * 293.82510 * 25 16 15 43 43 H 1.08997 * 109.70624 * 173.46625 * 25 16 15 44 44 H 1.08999 * 109.49536 * 65.31564 * 26 25 16 45 45 H 1.08996 * 109.49740 * 185.41361 * 26 25 16 46 46 H 1.09005 * 109.47236 * 180.02562 * 29 27 13 47 47 H 1.09000 * 109.47181 * 300.06608 * 29 27 13 48 48 H 1.08996 * 109.47135 * 60.07009 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2979 2.3841 0.0055 5 6 1.9716 3.5947 -0.0003 6 6 3.3541 3.5976 -0.0059 7 7 4.0333 2.4675 -0.0052 8 6 3.4305 1.2950 0.0002 9 6 4.2542 0.0330 0.0001 10 6 4.5344 -0.3840 1.4210 11 8 4.1068 0.2782 2.3427 12 7 5.2592 -1.4932 1.6672 13 6 5.5311 -1.8990 3.0484 14 1 5.6608 -1.0124 3.6691 15 6 4.3564 -2.7270 3.5787 16 7 4.7001 -3.2341 4.9142 17 6 3.8687 -3.0130 5.9796 18 1 3.2335 -2.1396 5.9969 19 6 3.8424 -3.9113 7.0376 20 7 4.3424 -5.1194 6.8875 21 14 3.0973 -3.4054 8.6741 22 1 1.6712 -3.0410 8.4772 23 1 3.1910 -4.5366 9.6315 24 1 3.8367 -2.2364 9.2144 25 6 5.9524 -3.9832 5.0848 26 6 7.1092 -3.1411 4.5375 27 6 6.8062 -2.7442 3.0909 28 1 6.6666 -3.6424 2.4895 29 6 7.9750 -1.9319 2.5297 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.2184 2.3518 0.0102 34 1 1.4233 4.5251 -0.0001 35 1 3.8848 4.5381 -0.0108 36 1 5.1960 0.2139 -0.5179 37 1 3.7054 -0.7589 -0.5095 38 1 5.6008 -2.0230 0.9299 39 1 4.1673 -3.5646 2.9074 40 1 3.4657 -2.1021 3.6431 41 1 4.3237 -5.7473 7.6267 42 1 5.8935 -4.9232 4.5362 43 1 6.1175 -4.1872 6.1427 44 1 7.2244 -2.2431 5.1446 45 1 8.0301 -3.7233 4.5698 46 1 8.8833 -2.5339 2.5594 47 1 7.7594 -1.6492 1.4993 48 1 8.1153 -1.0338 3.1311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968037440.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:19 Heat of formation + Delta-G solvation = -20.744008 kcal Electronic energy + Delta-G solvation = -29379.805008 eV Core-core repulsion = 25435.596319 eV Total energy + Delta-G solvation = -3944.208689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.94381 -39.47518 -38.25912 -37.51555 -34.37923 -33.24878 -32.86833 -31.55982 -31.03696 -29.34419 -28.06966 -27.59489 -26.98557 -24.04409 -23.04308 -23.02574 -21.88778 -20.96862 -20.04421 -19.27231 -18.25320 -17.29324 -16.86103 -16.78650 -16.39456 -15.88074 -15.40774 -14.91256 -14.62723 -14.47521 -14.08315 -13.98943 -13.71448 -13.52774 -13.40527 -13.33831 -13.19996 -12.90893 -12.47959 -12.36115 -12.03234 -11.87138 -11.63103 -11.58534 -11.54086 -11.41488 -10.96869 -10.74799 -10.59669 -10.20316 -10.12991 -9.95851 -9.83900 -9.74269 -9.70736 -9.56378 -9.33395 -8.68706 -8.45288 -8.33039 -6.60689 -5.73427 -3.15397 0.95959 1.14531 2.99471 3.03020 3.36736 3.43914 3.48222 3.51811 3.80642 4.17662 4.44585 4.54853 4.56756 4.79111 4.91516 4.97467 5.02446 5.12268 5.20707 5.28994 5.30264 5.35458 5.37878 5.44917 5.55028 5.64807 5.68962 5.84766 5.92674 5.98424 6.05183 6.15470 6.25342 6.28193 6.31075 6.37237 6.63968 6.69881 6.79321 6.81804 6.91514 7.02470 7.11220 7.41417 7.70094 7.86973 7.87721 7.89320 8.50548 8.62429 9.27817 9.90234 10.46388 11.35305 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003317 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.632161 B = 8440.301395 C = 9724.524153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.094 3.906 4 C -0.166 4.166 5 C -0.135 4.135 6 C 0.061 3.939 7 N -0.439 5.439 8 C 0.130 3.870 9 C -0.087 4.087 10 C 0.520 3.480 11 O -0.531 6.531 12 N -0.721 5.721 13 C 0.134 3.866 14 H 0.084 0.916 15 C 0.143 3.857 16 N -0.588 5.588 17 C -0.249 4.249 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.905 5.905 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.168 3.832 26 C -0.134 4.134 27 C -0.091 4.091 28 H 0.066 0.934 29 C -0.144 4.144 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.394 0.606 39 H 0.016 0.984 40 H 0.056 0.944 41 H 0.253 0.747 42 H 0.018 0.982 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.048 0.952 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 11.478 -19.058 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.046 3.954 4 C -0.192 4.192 5 C -0.155 4.155 6 C -0.096 4.096 7 N -0.148 5.148 8 C -0.011 4.011 9 C -0.128 4.128 10 C 0.305 3.695 11 O -0.407 6.407 12 N -0.372 5.372 13 C 0.029 3.971 14 H 0.102 0.898 15 C 0.015 3.985 16 N -0.310 5.310 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.042 3.958 26 C -0.173 4.173 27 C -0.110 4.110 28 H 0.085 0.915 29 C -0.201 4.201 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.227 0.773 39 H 0.034 0.966 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.069 11.646 -18.236 21.664 hybrid contribution -1.491 0.123 0.537 1.589 sum -2.560 11.769 -17.699 21.409 Atomic orbital electron populations 1.23123 0.78080 1.04528 1.01203 1.86120 1.21590 1.25783 1.88095 1.19850 0.93108 0.85279 0.97165 1.21655 1.00719 0.92149 1.04703 1.21950 0.95765 0.98156 0.99656 1.22567 0.91431 0.96264 0.99306 1.67438 1.40018 0.97509 1.09860 1.19926 0.87747 0.93382 1.00025 1.20460 1.01422 0.94499 0.96374 1.20163 0.78277 0.80652 0.90399 1.90733 1.50461 1.53419 1.46103 1.46056 1.54921 1.26854 1.09409 1.21712 0.96083 0.98460 0.80835 0.89769 1.21181 0.94724 0.94831 0.87722 1.43979 1.20229 1.63697 1.03133 1.19179 1.18708 1.03636 0.96355 0.91749 1.25009 1.00205 0.94577 0.99766 1.70026 1.49986 1.03960 1.30969 0.86367 0.79154 0.77436 0.83832 1.20919 1.21641 1.20994 1.20825 0.82566 0.90916 1.01450 1.22249 0.99963 1.01049 0.94085 1.21298 0.93582 0.97710 0.98383 0.91515 1.21848 0.97950 1.00068 1.00232 0.92749 0.87734 0.92403 0.84358 0.84612 0.82534 0.87287 0.87087 0.77270 0.96579 0.92502 0.93665 0.96383 0.89360 0.92481 0.92781 0.93065 0.93302 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.83 101.05 0.99 1.21 16 2 O -0.30 -3.80 9.54 -19.46 -0.19 -3.98 16 3 C 0.09 1.23 6.67 -39.07 -0.26 0.97 16 4 C -0.17 -1.77 9.14 -39.13 -0.36 -2.13 16 5 C -0.14 -1.32 10.11 -39.47 -0.40 -1.72 16 6 C 0.06 0.69 11.18 -17.54 -0.20 0.49 16 7 N -0.44 -6.18 10.27 -9.35 -0.10 -6.27 16 8 C 0.13 1.82 5.29 -82.42 -0.44 1.39 16 9 C -0.09 -1.08 5.78 -29.03 -0.17 -1.25 16 10 C 0.52 8.52 7.79 -10.98 -0.09 8.44 16 11 O -0.53 -11.32 15.70 5.56 0.09 -11.23 16 12 N -0.72 -10.78 4.37 -53.69 -0.23 -11.02 16 13 C 0.13 2.50 2.06 -67.81 -0.14 2.36 16 14 H 0.08 1.84 7.58 -51.93 -0.39 1.44 16 15 C 0.14 3.22 6.09 -3.71 -0.02 3.20 16 16 N -0.59 -15.30 2.99 -172.32 -0.52 -15.82 16 17 C -0.25 -7.17 9.58 -15.06 -0.14 -7.31 16 18 H 0.06 1.88 7.89 -52.48 -0.41 1.46 16 19 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -26.65 11.19 55.49 0.62 -26.03 16 21 Si 0.90 22.44 29.59 -169.99 -5.03 17.41 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 26 C -0.13 -2.56 5.36 -26.61 -0.14 -2.70 16 27 C -0.09 -1.49 2.27 -90.58 -0.21 -1.70 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 C -0.14 -1.95 9.02 37.16 0.34 -1.61 16 30 H 0.05 0.34 7.71 -51.93 -0.40 -0.06 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.48 7.69 -51.93 -0.40 0.08 16 33 H 0.14 1.09 6.45 -52.49 -0.34 0.75 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.11 1.16 7.51 -51.93 -0.39 0.77 16 38 H 0.39 4.50 8.30 -40.82 -0.34 4.16 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 2.38 6.07 -51.93 -0.31 2.06 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.58 7.35 -51.93 -0.38 0.20 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -35.63 387.54 -8.42 -44.05 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.57 Total: 3.40 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.33 Total: 3.66 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.23 Total: -59.13 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.10 Total: -15.22 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.63 -8.42 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968037440.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.302 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds