Wall clock time and date at job start Tue Mar 31 2020 17:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35674 * 116.99634 * 2 1 4 4 C 1.38921 * 119.68465 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.11321 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.75746 * 180.02562 * 5 4 3 7 7 C 1.50692 * 109.47325 * 89.99803 * 6 5 4 8 8 O 1.21287 * 120.00217 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00040 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99858 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.50015 * 35.07005 * 10 9 7 12 12 C 1.53192 * 109.49927 * 274.99955 * 10 9 7 13 13 N 1.46921 * 108.77604 * 294.65472 * 12 10 9 14 14 C 1.36935 * 120.63168 * 126.11408 * 13 12 10 15 15 H 1.07999 * 120.00390 * 331.87644 * 14 13 12 16 16 C 1.38815 * 119.99999 * 151.87197 * 14 13 12 17 17 N 1.31621 * 119.99984 * 343.17473 * 16 14 13 18 18 Si 1.86800 * 120.00122 * 163.17152 * 16 14 13 19 19 H 1.48504 * 109.46788 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47041 * 119.99977 * 18 16 14 21 21 H 1.48497 * 109.47258 * 240.00106 * 18 16 14 22 22 C 1.46929 * 118.73911 * 306.38995 * 13 12 10 23 23 C 1.53192 * 108.77456 * 53.60765 * 22 13 12 24 24 C 1.53035 * 109.31384 * 305.36490 * 23 22 13 25 25 H 1.08995 * 109.46427 * 301.34772 * 24 23 22 26 26 C 1.52996 * 109.44935 * 181.37782 * 24 23 22 27 27 C 1.38827 * 118.48694 * 0.27548 * 5 4 3 28 28 C 1.38048 * 119.28587 * 359.45207 * 27 5 4 29 29 N 1.31961 * 120.83551 * 0.56364 * 28 27 5 30 30 H 1.09002 * 109.46840 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47040 * 299.99256 * 1 2 3 32 32 H 1.09002 * 109.47213 * 59.99991 * 1 2 3 33 33 H 1.08000 * 120.44288 * 359.95695 * 4 3 2 34 34 H 1.09005 * 109.46846 * 329.99531 * 6 5 4 35 35 H 1.09006 * 109.46843 * 209.99957 * 6 5 4 36 36 H 0.96998 * 119.99819 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.58744 * 174.86520 * 12 10 9 38 38 H 1.08995 * 109.70569 * 54.51101 * 12 10 9 39 39 H 0.97002 * 120.00123 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.58892 * 173.39454 * 22 13 12 41 41 H 1.08998 * 109.58408 * 293.82220 * 22 13 12 42 42 H 1.08998 * 109.49643 * 185.41183 * 23 22 13 43 43 H 1.08998 * 109.52148 * 65.33293 * 23 22 13 44 44 H 1.09003 * 109.47346 * 299.93902 * 26 24 23 45 45 H 1.09002 * 109.47237 * 59.94115 * 26 24 23 46 46 H 1.09007 * 109.47464 * 179.97438 * 26 24 23 47 47 H 1.07993 * 120.35741 * 179.70539 * 27 5 4 48 48 H 1.08001 * 119.58013 * 180.27262 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2741 -0.0005 5 6 4.0484 2.5133 -0.0011 6 6 5.5511 2.6271 -0.0022 7 6 6.0510 2.6650 -1.4234 8 8 5.2644 2.6049 -2.3447 9 7 7.3721 2.7656 -1.6706 10 6 7.8580 2.8018 -3.0522 11 1 7.1430 3.3389 -3.6754 12 6 8.0187 1.3710 -3.5754 13 7 9.0783 0.7029 -2.8076 14 6 8.8413 -0.4949 -2.1877 15 1 7.8432 -0.7449 -1.8594 16 6 9.8839 -1.3878 -1.9811 17 7 11.0080 -1.2537 -2.6526 18 14 9.6916 -2.7796 -0.7502 19 1 8.3429 -2.7111 -0.1323 20 1 9.8511 -4.0816 -1.4463 21 1 10.7275 -2.6529 0.3062 22 6 10.3952 1.3473 -2.7125 23 6 10.2080 2.7784 -2.1990 24 6 9.2123 3.5130 -3.0996 25 1 9.5842 3.5178 -4.1241 26 6 9.0490 4.9533 -2.6098 27 6 3.2504 3.6492 0.0048 28 6 1.8770 3.5097 -0.0005 29 7 1.3186 2.3141 0.0000 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.0229 0.3696 -0.0003 34 1 5.9810 1.7671 0.5114 35 1 5.8466 3.5421 0.5113 36 1 8.0011 2.8132 -0.9338 37 1 8.2922 1.3962 -4.6303 38 1 7.0815 0.8278 -3.4539 39 1 11.7364 -1.8778 -2.5085 40 1 11.0256 0.7900 -2.0196 41 1 10.8626 1.3706 -3.6970 42 1 11.1655 3.2988 -2.2149 43 1 9.8251 2.7521 -1.1789 44 1 8.6765 4.9487 -1.5854 45 1 10.0134 5.4601 -2.6435 46 1 8.3402 5.4771 -3.2513 47 1 3.6992 4.6315 0.0094 48 1 1.2517 4.3903 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968330867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:28 Heat of formation + Delta-G solvation = -21.479432 kcal Electronic energy + Delta-G solvation = -29409.799408 eV Core-core repulsion = 25465.558829 eV Total energy + Delta-G solvation = -3944.240579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.73503 -39.69989 -38.13400 -37.44679 -34.24707 -33.73261 -32.72747 -31.10841 -30.77669 -29.69889 -28.40033 -27.32856 -26.91404 -24.10665 -23.49558 -22.64495 -21.91828 -21.12637 -20.38901 -18.72806 -17.91906 -17.17115 -17.09815 -16.53115 -16.00478 -15.95625 -15.36088 -15.06761 -14.77075 -14.32081 -14.24952 -14.07034 -13.79994 -13.56890 -13.38173 -13.25663 -13.04422 -12.79669 -12.55662 -12.29614 -12.01945 -11.97258 -11.62561 -11.61857 -11.40584 -11.26959 -11.16654 -10.85997 -10.76747 -10.36764 -10.27085 -9.97897 -9.88674 -9.71151 -9.65494 -9.49517 -9.33046 -8.66097 -8.52081 -8.38712 -6.65786 -5.80716 -3.22905 1.15035 1.22511 2.98169 3.03698 3.34611 3.43704 3.45206 3.52673 3.87845 4.26077 4.47819 4.52399 4.89891 5.06287 5.06983 5.10457 5.18316 5.20382 5.22095 5.27024 5.32368 5.35378 5.40172 5.46213 5.54185 5.56787 5.74118 5.84555 5.87495 5.92487 6.00615 6.17487 6.20436 6.26769 6.37797 6.40151 6.41733 6.56186 6.62693 6.78577 6.83832 7.07006 7.20431 7.29889 7.61260 7.78992 7.81154 7.94273 8.43364 8.61679 9.20121 9.82892 10.39779 11.27607 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.003724 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.219181 B = 7517.453297 C = 9533.478384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.308 6.308 3 C 0.320 3.680 4 C -0.173 4.173 5 C 0.020 3.980 6 C -0.108 4.108 7 C 0.517 3.483 8 O -0.544 6.544 9 N -0.698 5.698 10 C 0.136 3.864 11 H 0.076 0.924 12 C 0.134 3.866 13 N -0.587 5.587 14 C -0.246 4.246 15 H 0.063 0.937 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.898 3.102 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.168 3.832 23 C -0.136 4.136 24 C -0.094 4.094 25 H 0.077 0.923 26 C -0.143 4.143 27 C -0.197 4.197 28 C 0.135 3.865 29 N -0.545 5.545 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.142 0.858 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.399 0.601 37 H 0.025 0.975 38 H 0.059 0.941 39 H 0.252 0.748 40 H 0.088 0.912 41 H 0.018 0.982 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.134 0.866 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.760 12.200 7.000 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.215 6.215 3 C 0.141 3.859 4 C -0.193 4.193 5 C 0.012 3.988 6 C -0.148 4.148 7 C 0.302 3.698 8 O -0.422 6.422 9 N -0.349 5.349 10 C 0.030 3.970 11 H 0.094 0.906 12 C 0.007 3.993 13 N -0.309 5.309 14 C -0.376 4.376 15 H 0.081 0.919 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.728 3.272 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.042 3.958 23 C -0.176 4.176 24 C -0.113 4.113 25 H 0.095 0.905 26 C -0.201 4.201 27 C -0.217 4.217 28 C -0.020 4.020 29 N -0.269 5.269 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.159 0.841 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.235 0.765 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.152 0.848 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.978 11.672 6.330 18.567 hybrid contribution 1.026 -0.624 0.884 1.491 sum -11.953 11.048 7.214 17.803 Atomic orbital electron populations 1.22820 0.77499 1.02767 1.02254 1.86260 1.22697 1.24634 1.87916 1.19730 0.89214 0.84595 0.92354 1.20935 0.92055 0.99231 1.07101 1.19464 0.94666 0.92230 0.92396 1.20732 0.91726 1.05798 0.96573 1.20103 0.82735 0.76697 0.90276 1.90708 1.55392 1.50009 1.46089 1.45863 1.06420 1.73244 1.09381 1.21533 0.94273 0.98772 0.82396 0.90551 1.21288 0.93458 0.90917 0.93638 1.43991 1.08051 1.20990 1.57891 1.19170 0.95021 0.93082 1.30321 0.91909 1.25022 0.97592 0.97358 0.99582 1.70038 1.05624 1.38221 1.40826 0.86282 0.77506 0.82197 0.81179 1.20280 1.21755 1.21616 1.20809 0.87872 0.88101 0.98990 1.22259 0.97192 0.99688 0.98445 1.21314 0.95320 0.93860 1.00800 0.90489 1.21844 1.00905 0.96422 1.00908 1.21789 0.94737 0.99149 1.06053 1.22260 0.92635 0.93529 0.93553 1.67254 1.41017 0.98854 1.19782 0.88783 0.92489 0.92389 0.84060 0.87117 0.87634 0.76535 0.95749 0.92268 0.93747 0.89417 0.96384 0.92934 0.93021 0.93084 0.93022 0.93302 0.84788 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.31 -4.33 10.48 -18.72 -0.20 -4.53 16 3 C 0.32 4.70 7.49 -17.12 -0.13 4.57 16 4 C -0.17 -2.51 9.75 -39.28 -0.38 -2.89 16 5 C 0.02 0.27 4.41 -104.35 -0.46 -0.19 16 6 C -0.11 -1.28 5.88 -29.04 -0.17 -1.45 16 7 C 0.52 8.11 7.79 -10.99 -0.09 8.02 16 8 O -0.54 -10.61 15.70 5.55 0.09 -10.53 16 9 N -0.70 -10.69 4.25 -53.69 -0.23 -10.92 16 10 C 0.14 2.30 2.24 -67.81 -0.15 2.14 16 11 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 12 C 0.13 2.83 6.12 -3.71 -0.02 2.81 16 13 N -0.59 -13.89 2.91 -172.32 -0.50 -14.39 16 14 C -0.25 -6.53 9.58 -15.06 -0.14 -6.68 16 15 H 0.06 1.70 7.88 -52.49 -0.41 1.28 16 16 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 17 N -0.90 -25.53 11.20 55.49 0.62 -24.91 16 18 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.17 3.72 5.31 -3.71 -0.02 3.70 16 23 C -0.14 -2.28 5.19 -26.61 -0.14 -2.41 16 24 C -0.09 -1.41 2.48 -90.58 -0.22 -1.63 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 26 C -0.14 -1.73 9.05 37.16 0.34 -1.40 16 27 C -0.20 -2.27 9.81 -39.43 -0.39 -2.65 16 28 C 0.14 1.56 11.18 -17.57 -0.20 1.36 16 29 N -0.54 -7.45 9.22 -13.33 -0.12 -7.57 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.11 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.11 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.40 5.59 6.64 -40.82 -0.27 5.32 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 39 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.83 6.41 -51.93 -0.33 0.50 16 44 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 48 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -32.50 388.16 -8.31 -40.80 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.58 Total: 5.12 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.21 Total: 4.77 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.23 Total: -57.79 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.11 Total: -15.05 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.50 -8.31 -40.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968330867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.323 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds