Wall clock time and date at job start Tue Mar 31 2020 17:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35674 * 116.99634 * 2 1 4 4 C 1.38921 * 119.68465 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.11321 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.75746 * 180.02562 * 5 4 3 7 7 C 1.50692 * 109.47325 * 89.99803 * 6 5 4 8 8 O 1.21287 * 120.00217 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00040 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99858 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.50015 * 35.07005 * 10 9 7 12 12 C 1.53192 * 109.49927 * 274.99955 * 10 9 7 13 13 N 1.46921 * 108.77604 * 294.65472 * 12 10 9 14 14 C 1.36935 * 120.63168 * 126.11408 * 13 12 10 15 15 H 1.07999 * 120.00390 * 331.87644 * 14 13 12 16 16 C 1.38815 * 119.99999 * 151.87197 * 14 13 12 17 17 N 1.31621 * 119.99984 * 343.17473 * 16 14 13 18 18 Si 1.86800 * 120.00122 * 163.17152 * 16 14 13 19 19 H 1.48504 * 109.46788 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47041 * 119.99977 * 18 16 14 21 21 H 1.48497 * 109.47258 * 240.00106 * 18 16 14 22 22 C 1.46929 * 118.73911 * 306.38995 * 13 12 10 23 23 C 1.53192 * 108.77456 * 53.60765 * 22 13 12 24 24 C 1.53035 * 109.31384 * 305.36490 * 23 22 13 25 25 H 1.08995 * 109.46427 * 301.34772 * 24 23 22 26 26 C 1.52996 * 109.44935 * 181.37782 * 24 23 22 27 27 C 1.38827 * 118.48694 * 0.27548 * 5 4 3 28 28 C 1.38048 * 119.28587 * 359.45207 * 27 5 4 29 29 N 1.31961 * 120.83551 * 0.56364 * 28 27 5 30 30 H 1.09002 * 109.46840 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47040 * 299.99256 * 1 2 3 32 32 H 1.09002 * 109.47213 * 59.99991 * 1 2 3 33 33 H 1.08000 * 120.44288 * 359.95695 * 4 3 2 34 34 H 1.09005 * 109.46846 * 329.99531 * 6 5 4 35 35 H 1.09006 * 109.46843 * 209.99957 * 6 5 4 36 36 H 0.96998 * 119.99819 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.58744 * 174.86520 * 12 10 9 38 38 H 1.08995 * 109.70569 * 54.51101 * 12 10 9 39 39 H 0.97002 * 120.00123 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.58892 * 173.39454 * 22 13 12 41 41 H 1.08998 * 109.58408 * 293.82220 * 22 13 12 42 42 H 1.08998 * 109.49643 * 185.41183 * 23 22 13 43 43 H 1.08998 * 109.52148 * 65.33293 * 23 22 13 44 44 H 1.09003 * 109.47346 * 299.93902 * 26 24 23 45 45 H 1.09002 * 109.47237 * 59.94115 * 26 24 23 46 46 H 1.09007 * 109.47464 * 179.97438 * 26 24 23 47 47 H 1.07993 * 120.35741 * 179.70539 * 27 5 4 48 48 H 1.08001 * 119.58013 * 180.27262 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2741 -0.0005 5 6 4.0484 2.5133 -0.0011 6 6 5.5511 2.6271 -0.0022 7 6 6.0510 2.6650 -1.4234 8 8 5.2644 2.6049 -2.3447 9 7 7.3721 2.7656 -1.6706 10 6 7.8580 2.8018 -3.0522 11 1 7.1430 3.3389 -3.6754 12 6 8.0187 1.3710 -3.5754 13 7 9.0783 0.7029 -2.8076 14 6 8.8413 -0.4949 -2.1877 15 1 7.8432 -0.7449 -1.8594 16 6 9.8839 -1.3878 -1.9811 17 7 11.0080 -1.2537 -2.6526 18 14 9.6916 -2.7796 -0.7502 19 1 8.3429 -2.7111 -0.1323 20 1 9.8511 -4.0816 -1.4463 21 1 10.7275 -2.6529 0.3062 22 6 10.3952 1.3473 -2.7125 23 6 10.2080 2.7784 -2.1990 24 6 9.2123 3.5130 -3.0996 25 1 9.5842 3.5178 -4.1241 26 6 9.0490 4.9533 -2.6098 27 6 3.2504 3.6492 0.0048 28 6 1.8770 3.5097 -0.0005 29 7 1.3186 2.3141 0.0000 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.0229 0.3696 -0.0003 34 1 5.9810 1.7671 0.5114 35 1 5.8466 3.5421 0.5113 36 1 8.0011 2.8132 -0.9338 37 1 8.2922 1.3962 -4.6303 38 1 7.0815 0.8278 -3.4539 39 1 11.7364 -1.8778 -2.5085 40 1 11.0256 0.7900 -2.0196 41 1 10.8626 1.3706 -3.6970 42 1 11.1655 3.2988 -2.2149 43 1 9.8251 2.7521 -1.1789 44 1 8.6765 4.9487 -1.5854 45 1 10.0134 5.4601 -2.6435 46 1 8.3402 5.4771 -3.2513 47 1 3.6992 4.6315 0.0094 48 1 1.2517 4.3903 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968330867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:27 Heat of formation + Delta-G solvation = -43.550736 kcal Electronic energy + Delta-G solvation = -29410.756492 eV Core-core repulsion = 25465.558829 eV Total energy + Delta-G solvation = -3945.197663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.73604 -40.98999 -39.32880 -38.66862 -35.97423 -34.75897 -34.07522 -32.97539 -31.72438 -31.12200 -29.54072 -28.71732 -27.93616 -25.81268 -24.46923 -24.01164 -23.15377 -22.72699 -21.54678 -20.24797 -18.92932 -18.66209 -18.13619 -18.02608 -16.97086 -16.95887 -16.86256 -16.51483 -16.23425 -15.67340 -15.38680 -15.32271 -15.16880 -14.82671 -14.72052 -14.62704 -14.28958 -14.07248 -13.74605 -13.45903 -13.29232 -13.17365 -12.98425 -12.87903 -12.73546 -12.64786 -12.47623 -12.34671 -12.16697 -12.16081 -11.88755 -11.61346 -11.26677 -11.07301 -11.04408 -10.67889 -10.55879 -10.48245 -9.92748 -9.47883 -8.61853 -7.86763 -5.31702 0.17840 0.25475 1.43466 1.47128 1.56196 1.76066 2.11771 2.38864 2.50545 2.85777 3.27603 3.35625 3.59919 3.68595 3.83631 3.99977 4.04668 4.08542 4.13947 4.15612 4.20792 4.40756 4.42534 4.50433 4.55465 4.60374 4.65820 4.73000 4.78392 4.79658 4.81697 4.84984 4.93314 5.03955 5.04597 5.11205 5.26265 5.30658 5.34304 5.49687 5.50015 5.54638 5.66175 5.70577 5.80900 6.25312 6.39602 6.72452 6.85280 7.16821 7.39917 7.86670 8.38316 9.18546 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.003724 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.219181 B = 7517.453297 C = 9533.478384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.329 6.329 3 C 0.299 3.701 4 C -0.199 4.199 5 C 0.011 3.989 6 C -0.100 4.100 7 C 0.515 3.485 8 O -0.586 6.586 9 N -0.692 5.692 10 C 0.149 3.851 11 H 0.077 0.923 12 C 0.135 3.865 13 N -0.597 5.597 14 C -0.251 4.251 15 H 0.053 0.947 16 C -0.044 4.044 17 N -0.932 5.932 18 Si 0.959 3.041 19 H -0.271 1.271 20 H -0.298 1.298 21 H -0.284 1.284 22 C 0.173 3.827 23 C -0.122 4.122 24 C -0.086 4.086 25 H 0.072 0.928 26 C -0.134 4.134 27 C -0.193 4.193 28 C 0.132 3.868 29 N -0.556 5.556 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.149 0.851 36 H 0.408 0.592 37 H 0.014 0.986 38 H 0.031 0.969 39 H 0.249 0.751 40 H 0.056 0.944 41 H -0.008 1.008 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.167 0.833 48 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.173 14.935 8.722 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.237 6.237 3 C 0.122 3.878 4 C -0.220 4.220 5 C 0.003 3.997 6 C -0.139 4.139 7 C 0.302 3.698 8 O -0.467 6.467 9 N -0.343 5.343 10 C 0.042 3.958 11 H 0.095 0.905 12 C 0.008 3.992 13 N -0.321 5.321 14 C -0.381 4.381 15 H 0.070 0.930 16 C -0.239 4.239 17 N -0.578 5.578 18 Si 0.788 3.212 19 H -0.196 1.196 20 H -0.225 1.225 21 H -0.210 1.210 22 C 0.048 3.952 23 C -0.161 4.161 24 C -0.105 4.105 25 H 0.090 0.910 26 C -0.191 4.191 27 C -0.213 4.213 28 C -0.023 4.023 29 N -0.280 5.280 30 H 0.137 0.863 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.167 0.833 36 H 0.246 0.754 37 H 0.032 0.968 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.010 0.990 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.184 0.816 48 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.394 14.430 8.076 21.280 hybrid contribution 1.089 -1.493 0.256 1.866 sum -12.304 12.937 8.332 19.702 Atomic orbital electron populations 1.23030 0.75822 1.04456 1.02286 1.86224 1.24530 1.24921 1.88035 1.19921 0.89520 0.85144 0.93260 1.21052 0.92351 0.99750 1.08876 1.19706 0.95521 0.92210 0.92297 1.20762 0.90855 1.08255 0.94011 1.20764 0.82278 0.75264 0.91509 1.90694 1.56360 1.51788 1.47843 1.45796 1.06743 1.72910 1.08877 1.21231 0.95704 0.95543 0.83302 0.90495 1.21329 0.91340 0.93358 0.93212 1.44155 1.09021 1.20716 1.58192 1.19316 0.94584 0.94224 1.30001 0.92957 1.25661 0.97463 0.99579 1.01236 1.70177 1.06221 1.39144 1.42262 0.85338 0.77685 0.79090 0.79118 1.19595 1.22506 1.21013 1.20679 0.86419 0.91097 0.97027 1.22065 0.99092 0.95960 0.98987 1.21246 0.93174 0.95665 1.00441 0.90954 1.21749 1.02213 0.93602 1.01516 1.22174 0.94684 0.99945 1.04480 1.22965 0.93501 0.93846 0.92028 1.67317 1.41263 0.99318 1.20149 0.86339 0.91954 0.92764 0.85334 0.86519 0.83298 0.75449 0.96805 0.95074 0.94130 0.92556 0.98974 0.90629 0.91839 0.91888 0.91347 0.92597 0.81590 0.78968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.38 113.37 1.18 1.96 16 2 O -0.33 -9.51 10.48 -89.91 -0.94 -10.45 16 3 C 0.30 8.91 7.49 84.79 0.63 9.55 16 4 C -0.20 -5.90 9.75 22.47 0.22 -5.68 16 5 C 0.01 0.27 4.41 -19.69 -0.09 0.18 16 6 C -0.10 -2.11 5.88 29.10 0.17 -1.94 16 7 C 0.51 15.38 7.79 87.65 0.68 16.06 16 8 O -0.59 -22.66 15.70 -3.05 -0.05 -22.71 16 9 N -0.69 -19.93 4.25 -442.16 -1.88 -21.81 16 10 C 0.15 4.87 2.24 45.07 0.10 4.97 16 11 H 0.08 2.57 7.58 -2.39 -0.02 2.55 16 12 C 0.13 5.82 6.12 86.36 0.53 6.35 16 13 N -0.60 -28.92 2.91 -699.10 -2.03 -30.96 16 14 C -0.25 -13.62 9.58 84.03 0.81 -12.82 16 15 H 0.05 2.91 7.88 -2.91 -0.02 2.89 16 16 C -0.04 -2.41 4.92 84.86 0.42 -1.99 16 17 N -0.93 -54.09 11.20 21.65 0.24 -53.85 16 18 Si 0.96 44.59 29.59 68.60 2.03 46.62 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 C 0.17 7.76 5.31 86.36 0.46 8.22 16 23 C -0.12 -3.82 5.19 30.67 0.16 -3.67 16 24 C -0.09 -2.39 2.48 -10.77 -0.03 -2.42 16 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 26 C -0.13 -2.67 9.05 71.98 0.65 -2.02 16 27 C -0.19 -3.89 9.81 22.37 0.22 -3.67 16 28 C 0.13 2.72 11.18 84.63 0.95 3.66 16 29 N -0.56 -14.72 9.22 -308.95 -2.85 -17.57 16 30 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 32 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 33 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 34 H 0.12 2.37 8.10 -2.38 -0.02 2.35 16 35 H 0.15 1.85 8.10 -2.38 -0.02 1.83 16 36 H 0.41 10.29 6.64 -92.71 -0.62 9.67 16 37 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.03 1.49 7.93 -2.39 -0.02 1.47 16 39 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.06 2.88 6.06 -2.39 -0.01 2.87 16 41 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.06 1.86 6.41 -2.39 -0.02 1.84 16 44 H 0.06 1.13 7.54 -2.39 -0.02 1.11 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 48 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -74.11 388.16 1.92 -72.19 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.34 Total: 21.78 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 7.06 Total: 16.75 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -6.52 Total: -124.19 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.99 Total: -33.15 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -74.11 1.92 -72.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968330867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.643 kcal (2) G-P(sol) polarization free energy of solvation -74.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds