Wall clock time and date at job start Tue Mar 31 2020 17:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.45681 * 2 1 4 4 C 1.53349 * 109.41773 * 240.10120 * 2 1 3 5 5 C 1.53194 * 109.14721 * 178.67307 * 4 2 1 6 6 N 1.46924 * 108.89447 * 54.57940 * 5 4 2 7 7 C 1.36930 * 120.63300 * 126.34039 * 6 5 4 8 8 H 1.07996 * 120.00049 * 331.82927 * 7 6 5 9 9 C 1.38816 * 120.00324 * 151.82723 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.06571 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.06593 * 9 7 6 12 12 H 1.48500 * 109.46960 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47338 * 119.99948 * 11 9 7 14 14 H 1.48503 * 109.47085 * 239.99957 * 11 9 7 15 15 C 1.46929 * 118.73622 * 306.31812 * 6 5 4 16 16 C 1.53032 * 109.46055 * 119.97042 * 2 1 3 17 17 H 1.08998 * 109.52708 * 61.42144 * 16 2 1 18 18 N 1.46497 * 109.50154 * 301.33798 * 16 2 1 19 19 C 1.34776 * 120.00181 * 155.15532 * 18 16 2 20 20 O 1.21501 * 120.00123 * 0.02562 * 19 18 16 21 21 C 1.48334 * 119.99926 * 180.02562 * 19 18 16 22 22 N 1.31493 * 127.15728 * 359.69106 * 21 19 18 23 23 O 1.21425 * 111.52767 * 179.79799 * 22 21 19 24 24 C 1.33191 * 111.57084 * 0.43736 * 23 22 21 25 25 C 1.35376 * 106.63096 * 359.78221 * 24 23 22 26 26 C 1.50063 * 124.93478 * 179.82212 * 25 24 23 27 27 C 1.53541 * 108.23723 * 343.88690 * 26 25 24 28 28 C 1.53118 * 109.50949 * 49.19439 * 27 26 25 29 29 C 1.50594 * 129.60824 * 179.81494 * 24 23 22 30 30 H 1.08998 * 109.47606 * 300.02904 * 1 2 3 31 31 H 1.09009 * 109.47257 * 60.02779 * 1 2 3 32 32 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.68685 * 58.70988 * 4 2 1 34 34 H 1.08997 * 109.47481 * 298.50878 * 4 2 1 35 35 H 1.08999 * 109.58554 * 294.71486 * 5 4 2 36 36 H 1.09001 * 109.58356 * 174.43691 * 5 4 2 37 37 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.58736 * 173.39352 * 15 6 5 39 39 H 1.09002 * 109.58596 * 293.82293 * 15 6 5 40 40 H 0.97001 * 119.99677 * 335.16933 * 18 16 2 41 41 H 1.09010 * 109.70777 * 103.57328 * 26 25 24 42 42 H 1.09001 * 109.71589 * 224.15467 * 26 25 24 43 43 H 1.08998 * 109.46801 * 169.20555 * 27 26 25 44 44 H 1.08996 * 109.46874 * 289.18503 * 27 26 25 45 45 H 1.08994 * 109.42814 * 50.24099 * 28 27 26 46 46 H 1.09000 * 109.42609 * 170.07726 * 28 27 26 47 47 H 1.09003 * 109.69431 * 43.53294 * 29 24 23 48 48 H 1.09003 * 109.73199 * 282.96400 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2538 5 6 3.5714 -0.6883 -1.2643 6 7 4.0679 -1.2487 -0.0002 7 6 4.9764 -2.2732 -0.0003 8 1 5.0045 -2.9700 -0.8249 9 6 5.8615 -2.4163 1.0595 10 7 6.0659 -1.4125 1.8861 11 14 6.7621 -4.0330 1.3127 12 1 6.3594 -4.9948 0.2553 13 1 8.2269 -3.8005 1.2390 14 1 6.4156 -4.5893 2.6452 15 6 3.5714 -0.6886 1.2642 16 6 2.0398 -0.7208 1.2500 17 1 1.6979 -1.7557 1.2387 18 7 1.5256 -0.0489 2.4459 19 6 1.4001 -0.7318 3.6011 20 8 1.7139 -1.9045 3.6507 21 6 0.8789 -0.0516 4.8118 22 7 0.5051 1.2046 4.9182 23 8 0.1201 1.4614 6.0408 24 6 0.1971 0.3987 6.8400 25 6 0.6869 -0.6159 6.0893 26 6 0.9427 -2.0080 6.5879 27 6 0.9499 -1.9748 8.1230 28 6 -0.2904 -1.2300 8.6242 29 6 -0.1660 0.2634 8.2952 30 1 -0.3634 0.5143 0.8897 31 1 -0.3634 0.5134 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6592 -0.2216 -2.1448 34 1 1.6980 -1.7559 -1.2421 35 1 3.9142 0.3412 -1.3674 36 1 3.9437 -1.2827 -2.0987 37 1 6.6846 -1.5123 2.6264 38 1 3.9416 -1.2847 2.0983 39 1 3.9143 0.3409 1.3673 40 1 1.2752 0.8874 2.4063 41 1 0.1540 -2.6744 6.2383 42 1 1.9082 -2.3578 6.2226 43 1 0.9419 -2.9943 8.5084 44 1 1.8467 -1.4622 8.4710 45 1 -1.1778 -1.6357 8.1385 46 1 -0.3785 -1.3575 9.7032 47 1 -1.1169 0.7616 8.4844 48 1 0.6127 0.7119 8.9121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968349224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:11 Heat of formation + Delta-G solvation = 29.376375 kcal Electronic energy + Delta-G solvation = -29793.449946 eV Core-core repulsion = 25851.414641 eV Total energy + Delta-G solvation = -3942.035306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.09533 -39.56369 -37.93141 -37.48007 -34.37904 -33.88315 -33.07607 -31.10706 -30.97761 -30.42508 -28.91269 -27.37069 -25.09876 -24.23348 -23.83964 -22.90475 -21.97679 -21.01182 -20.40306 -19.64883 -19.15494 -17.85603 -17.57928 -16.79269 -16.42570 -15.57188 -15.20724 -14.90535 -14.40610 -14.20918 -14.10554 -13.97674 -13.72640 -13.59474 -13.37223 -13.36333 -13.26952 -12.98973 -12.55832 -12.41326 -12.02348 -11.66823 -11.58830 -11.50250 -11.23821 -11.16888 -10.89626 -10.87463 -10.71511 -10.67238 -10.44141 -10.18320 -10.14558 -10.05393 -9.91448 -9.62988 -9.48996 -9.16483 -8.57638 -8.42540 -6.64819 -5.74755 -3.18468 1.15493 1.69824 2.79756 3.25462 3.42850 3.48476 3.50214 3.52018 4.05072 4.39177 4.52084 4.55347 4.56467 4.80951 4.89083 5.02837 5.17111 5.19791 5.25603 5.26814 5.39049 5.40223 5.50526 5.53346 5.57952 5.61775 5.70750 5.78284 5.89477 5.91611 6.02086 6.03239 6.06241 6.11517 6.22241 6.25124 6.38646 6.46484 6.51535 6.72600 6.75312 6.88987 6.97730 7.27898 7.72146 7.75655 7.85132 8.04910 8.46096 8.50752 9.23531 9.87572 10.42759 11.33375 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.003821 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.237620 B = 7325.551440 C = 9071.493012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.141 3.859 6 N -0.588 5.588 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.288 1.288 15 C 0.167 3.833 16 C 0.124 3.876 17 H 0.085 0.915 18 N -0.701 5.701 19 C 0.593 3.407 20 O -0.512 6.512 21 C -0.007 4.007 22 N -0.340 5.340 23 O 0.122 5.878 24 C -0.045 4.045 25 C -0.150 4.150 26 C -0.047 4.047 27 C -0.124 4.124 28 C -0.118 4.118 29 C -0.033 4.033 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.056 0.944 37 H 0.253 0.747 38 H 0.095 0.905 39 H 0.018 0.982 40 H 0.398 0.602 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.669 4.574 11.306 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.164 4.164 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.385 4.385 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.731 3.269 12 H -0.202 1.202 13 H -0.217 1.217 14 H -0.214 1.214 15 C 0.040 3.960 16 C 0.019 3.981 17 H 0.103 0.897 18 N -0.351 5.351 19 C 0.375 3.625 20 O -0.385 6.385 21 C -0.166 4.166 22 N -0.044 5.044 23 O 0.051 5.949 24 C -0.109 4.109 25 C -0.154 4.154 26 C -0.084 4.084 27 C -0.161 4.161 28 C -0.156 4.156 29 C -0.071 4.071 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.036 0.964 40 H 0.232 0.768 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.110 0.890 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.311 4.690 10.522 19.161 hybrid contribution 0.498 -0.771 0.459 1.026 sum -14.813 3.919 10.982 18.852 Atomic orbital electron populations 1.21857 0.95976 1.01560 1.00828 1.21359 0.94617 0.99755 0.95418 0.91398 1.22122 0.98935 1.00038 0.95329 1.20969 0.90826 0.96529 0.90169 1.43956 1.48065 1.39889 0.99116 1.19191 1.09460 1.03055 1.06824 0.91521 1.25049 0.97119 0.97398 0.99684 1.70031 1.37269 1.29018 1.17991 0.86241 0.78984 0.83698 0.77962 1.20157 1.21746 1.21436 1.21099 0.86230 0.97590 0.91132 1.22100 0.98553 0.96376 0.81073 0.89703 1.45942 1.64751 1.14385 1.10058 1.16804 0.78515 0.85933 0.81210 1.90828 1.49057 1.15018 1.83604 1.23249 1.05079 0.90947 0.97294 1.74532 1.14365 1.16467 0.99011 1.84654 1.60842 1.34758 1.14696 1.24084 1.03849 0.86293 0.96724 1.20674 1.04206 0.99178 0.91385 1.20020 1.04078 0.89944 0.94395 1.21724 0.98188 1.01234 0.94998 1.21651 0.99274 0.92944 1.01705 1.20234 1.03113 0.98536 0.85210 0.93286 0.92998 0.92903 0.92468 0.92050 0.96389 0.92549 0.93712 0.88676 0.96421 0.76799 0.89905 0.88873 0.90603 0.91294 0.91070 0.90150 0.89029 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.02 37.16 0.34 -1.69 16 2 C -0.09 -1.55 2.27 -90.42 -0.21 -1.75 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.12 -2.14 5.39 -26.45 -0.14 -2.29 16 5 C 0.14 2.97 6.50 -3.71 -0.02 2.95 16 6 N -0.59 -15.11 2.99 -172.32 -0.52 -15.63 16 7 C -0.26 -7.24 9.58 -15.06 -0.14 -7.38 16 8 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 9 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 10 N -0.90 -27.16 11.20 55.49 0.62 -26.54 16 11 Si 0.90 22.61 29.59 -169.99 -5.03 17.58 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 15 C 0.17 4.16 4.88 -3.71 -0.02 4.14 16 16 C 0.12 2.50 2.07 -67.81 -0.14 2.36 16 17 H 0.08 1.91 7.58 -51.93 -0.39 1.51 16 18 N -0.70 -12.74 4.37 -54.48 -0.24 -12.98 16 19 C 0.59 11.49 7.81 -12.11 -0.09 11.40 16 20 O -0.51 -11.53 15.75 5.36 0.08 -11.45 16 21 C -0.01 -0.12 7.19 -82.82 -0.60 -0.71 16 22 N -0.34 -5.22 11.89 33.29 0.40 -4.83 16 23 O 0.12 1.60 11.18 19.19 0.21 1.82 16 24 C -0.05 -0.52 7.38 -35.38 -0.26 -0.78 16 25 C -0.15 -2.10 6.04 -104.92 -0.63 -2.74 16 26 C -0.05 -0.58 5.66 -27.91 -0.16 -0.74 16 27 C -0.12 -1.06 5.92 -26.39 -0.16 -1.22 16 28 C -0.12 -0.76 5.88 -26.45 -0.16 -0.92 16 29 C -0.03 -0.23 6.31 -27.71 -0.17 -0.40 16 30 H 0.05 0.66 7.35 -51.93 -0.38 0.27 16 31 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.10 2.78 6.06 -51.93 -0.31 2.47 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.40 6.39 8.07 -40.82 -0.33 6.06 16 41 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 42 H 0.09 1.38 7.84 -51.93 -0.41 0.97 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 45 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -33.11 380.08 -9.10 -42.21 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.70 Total: 3.76 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -2.65 Total: 0.33 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.26 Total: -59.97 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.30 Total: -9.63 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.11 -9.10 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968349224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.587 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds