Wall clock time and date at job start Tue Mar 31 2020 17:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.45681 * 2 1 4 4 C 1.53349 * 109.41773 * 240.10120 * 2 1 3 5 5 C 1.53194 * 109.14721 * 178.67307 * 4 2 1 6 6 N 1.46924 * 108.89447 * 54.57940 * 5 4 2 7 7 C 1.36930 * 120.63300 * 126.34039 * 6 5 4 8 8 H 1.07996 * 120.00049 * 331.82927 * 7 6 5 9 9 C 1.38816 * 120.00324 * 151.82723 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.06571 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.06593 * 9 7 6 12 12 H 1.48500 * 109.46960 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47338 * 119.99948 * 11 9 7 14 14 H 1.48503 * 109.47085 * 239.99957 * 11 9 7 15 15 C 1.46929 * 118.73622 * 306.31812 * 6 5 4 16 16 C 1.53032 * 109.46055 * 119.97042 * 2 1 3 17 17 H 1.08998 * 109.52708 * 61.42144 * 16 2 1 18 18 N 1.46497 * 109.50154 * 301.33798 * 16 2 1 19 19 C 1.34776 * 120.00181 * 155.15532 * 18 16 2 20 20 O 1.21501 * 120.00123 * 0.02562 * 19 18 16 21 21 C 1.48334 * 119.99926 * 180.02562 * 19 18 16 22 22 N 1.31493 * 127.15728 * 359.69106 * 21 19 18 23 23 O 1.21425 * 111.52767 * 179.79799 * 22 21 19 24 24 C 1.33191 * 111.57084 * 0.43736 * 23 22 21 25 25 C 1.35376 * 106.63096 * 359.78221 * 24 23 22 26 26 C 1.50063 * 124.93478 * 179.82212 * 25 24 23 27 27 C 1.53541 * 108.23723 * 343.88690 * 26 25 24 28 28 C 1.53118 * 109.50949 * 49.19439 * 27 26 25 29 29 C 1.50594 * 129.60824 * 179.81494 * 24 23 22 30 30 H 1.08998 * 109.47606 * 300.02904 * 1 2 3 31 31 H 1.09009 * 109.47257 * 60.02779 * 1 2 3 32 32 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.68685 * 58.70988 * 4 2 1 34 34 H 1.08997 * 109.47481 * 298.50878 * 4 2 1 35 35 H 1.08999 * 109.58554 * 294.71486 * 5 4 2 36 36 H 1.09001 * 109.58356 * 174.43691 * 5 4 2 37 37 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.58736 * 173.39352 * 15 6 5 39 39 H 1.09002 * 109.58596 * 293.82293 * 15 6 5 40 40 H 0.97001 * 119.99677 * 335.16933 * 18 16 2 41 41 H 1.09010 * 109.70777 * 103.57328 * 26 25 24 42 42 H 1.09001 * 109.71589 * 224.15467 * 26 25 24 43 43 H 1.08998 * 109.46801 * 169.20555 * 27 26 25 44 44 H 1.08996 * 109.46874 * 289.18503 * 27 26 25 45 45 H 1.08994 * 109.42814 * 50.24099 * 28 27 26 46 46 H 1.09000 * 109.42609 * 170.07726 * 28 27 26 47 47 H 1.09003 * 109.69431 * 43.53294 * 29 24 23 48 48 H 1.09003 * 109.73199 * 282.96400 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2538 5 6 3.5714 -0.6883 -1.2643 6 7 4.0679 -1.2487 -0.0002 7 6 4.9764 -2.2732 -0.0003 8 1 5.0045 -2.9700 -0.8249 9 6 5.8615 -2.4163 1.0595 10 7 6.0659 -1.4125 1.8861 11 14 6.7621 -4.0330 1.3127 12 1 6.3594 -4.9948 0.2553 13 1 8.2269 -3.8005 1.2390 14 1 6.4156 -4.5893 2.6452 15 6 3.5714 -0.6886 1.2642 16 6 2.0398 -0.7208 1.2500 17 1 1.6979 -1.7557 1.2387 18 7 1.5256 -0.0489 2.4459 19 6 1.4001 -0.7318 3.6011 20 8 1.7139 -1.9045 3.6507 21 6 0.8789 -0.0516 4.8118 22 7 0.5051 1.2046 4.9182 23 8 0.1201 1.4614 6.0408 24 6 0.1971 0.3987 6.8400 25 6 0.6869 -0.6159 6.0893 26 6 0.9427 -2.0080 6.5879 27 6 0.9499 -1.9748 8.1230 28 6 -0.2904 -1.2300 8.6242 29 6 -0.1660 0.2634 8.2952 30 1 -0.3634 0.5143 0.8897 31 1 -0.3634 0.5134 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6592 -0.2216 -2.1448 34 1 1.6980 -1.7559 -1.2421 35 1 3.9142 0.3412 -1.3674 36 1 3.9437 -1.2827 -2.0987 37 1 6.6846 -1.5123 2.6264 38 1 3.9416 -1.2847 2.0983 39 1 3.9143 0.3409 1.3673 40 1 1.2752 0.8874 2.4063 41 1 0.1540 -2.6744 6.2383 42 1 1.9082 -2.3578 6.2226 43 1 0.9419 -2.9943 8.5084 44 1 1.8467 -1.4622 8.4710 45 1 -1.1778 -1.6357 8.1385 46 1 -0.3785 -1.3575 9.7032 47 1 -1.1169 0.7616 8.4844 48 1 0.6127 0.7119 8.9121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968349224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:10 Heat of formation + Delta-G solvation = 8.383428 kcal Electronic energy + Delta-G solvation = -29794.360269 eV Core-core repulsion = 25851.414641 eV Total energy + Delta-G solvation = -3942.945628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.23884 -41.16653 -39.31008 -38.56633 -36.20732 -35.14911 -34.62976 -32.88783 -32.02993 -31.35725 -30.55464 -29.07327 -26.47467 -25.80581 -25.08173 -23.77457 -23.51175 -22.70203 -21.74047 -21.10677 -20.38508 -19.00341 -18.82001 -18.69909 -17.70750 -17.26531 -16.80644 -16.08536 -16.05149 -15.68675 -15.35547 -15.30698 -15.03654 -14.89814 -14.79820 -14.55820 -14.33154 -14.22170 -14.12509 -13.63743 -13.35893 -13.28099 -13.12091 -12.80499 -12.62865 -12.53361 -12.41588 -12.22402 -11.97986 -11.93049 -11.86203 -11.72140 -11.71627 -11.52948 -11.34649 -11.28278 -11.17503 -10.61475 -10.26616 -10.14651 -8.75486 -7.94057 -5.40731 -0.03556 0.59248 1.37982 1.42146 1.51470 1.72551 1.92898 2.02249 2.45338 2.79659 3.22836 3.45490 3.61903 3.70032 3.72343 3.91013 3.91698 3.97807 4.05702 4.09967 4.22294 4.33331 4.39528 4.45344 4.49270 4.55776 4.58101 4.66957 4.85014 4.86767 4.90733 4.92160 4.98717 5.03894 5.10447 5.11025 5.14756 5.17220 5.18872 5.29362 5.31981 5.36075 5.42175 5.46201 5.57172 5.67374 6.24941 6.34367 6.88018 6.98794 7.07187 7.78574 8.29012 9.11584 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.003821 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.237620 B = 7325.551440 C = 9071.493012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.113 4.113 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.264 4.264 8 H 0.072 0.928 9 C -0.051 4.051 10 N -0.934 5.934 11 Si 0.963 3.037 12 H -0.261 1.261 13 H -0.285 1.285 14 H -0.297 1.297 15 C 0.181 3.819 16 C 0.140 3.860 17 H 0.058 0.942 18 N -0.692 5.692 19 C 0.589 3.411 20 O -0.554 6.554 21 C -0.039 4.039 22 N -0.349 5.349 23 O 0.138 5.862 24 C -0.018 4.018 25 C -0.176 4.176 26 C -0.048 4.048 27 C -0.120 4.120 28 C -0.113 4.113 29 C -0.033 4.033 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.247 0.753 38 H 0.044 0.956 39 H -0.005 1.005 40 H 0.410 0.590 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.114 0.886 47 H 0.124 0.876 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.222 5.587 12.251 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.394 4.394 8 H 0.089 0.911 9 C -0.246 4.246 10 N -0.580 5.580 11 Si 0.791 3.209 12 H -0.185 1.185 13 H -0.212 1.212 14 H -0.225 1.225 15 C 0.053 3.947 16 C 0.034 3.966 17 H 0.077 0.923 18 N -0.343 5.343 19 C 0.373 3.627 20 O -0.431 6.431 21 C -0.195 4.195 22 N -0.051 5.051 23 O 0.063 5.937 24 C -0.083 4.083 25 C -0.182 4.182 26 C -0.085 4.085 27 C -0.157 4.157 28 C -0.150 4.150 29 C -0.070 4.070 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.013 0.987 40 H 0.246 0.754 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.133 0.867 47 H 0.142 0.858 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.888 5.730 11.405 21.975 hybrid contribution 1.285 -1.027 0.195 1.657 sum -16.603 4.704 11.600 20.792 Atomic orbital electron populations 1.21767 0.93040 1.01826 1.02583 1.21337 0.96921 0.99319 0.92950 0.90601 1.22020 0.95685 1.00379 0.97183 1.21198 0.93579 0.96227 0.88021 1.44231 1.48157 1.39929 1.00833 1.19563 1.09319 1.03804 1.06745 0.91084 1.25840 0.98569 1.00399 0.99809 1.70194 1.38291 1.30941 1.18538 0.85264 0.77903 0.80198 0.77526 1.18459 1.21165 1.22453 1.20744 0.89387 0.94895 0.89644 1.21666 0.95142 0.96061 0.83720 0.92347 1.45805 1.64200 1.14834 1.09447 1.17241 0.77660 0.85627 0.82136 1.90793 1.50902 1.16977 1.84434 1.22995 1.07295 0.92029 0.97230 1.74501 1.14652 1.15669 1.00240 1.84626 1.59693 1.35151 1.14212 1.24927 1.00936 0.84325 0.98072 1.20950 1.05685 1.00631 0.90904 1.20026 1.01760 0.89192 0.97563 1.21737 0.99693 1.02723 0.91556 1.21690 0.97645 0.92054 1.03647 1.20643 1.05394 0.99383 0.81619 0.92830 0.89944 0.93401 0.88213 0.92709 0.96184 0.92182 0.94411 0.93708 0.98687 0.75360 0.90313 0.92725 0.89273 0.91368 0.91071 0.86722 0.85826 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.02 71.98 0.65 -2.78 16 2 C -0.09 -2.79 2.27 -10.67 -0.02 -2.81 16 3 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.11 -3.70 5.39 30.78 0.17 -3.53 16 5 C 0.13 5.63 6.50 86.36 0.56 6.19 16 6 N -0.61 -32.39 2.99 -699.08 -2.09 -34.48 16 7 C -0.26 -15.45 9.58 84.04 0.81 -14.64 16 8 H 0.07 4.00 7.88 -2.91 -0.02 3.97 16 9 C -0.05 -3.05 4.92 84.86 0.42 -2.63 16 10 N -0.93 -59.58 11.20 21.65 0.24 -59.34 16 11 Si 0.96 48.23 29.59 68.60 2.03 50.26 16 12 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 13 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 14 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 15 C 0.18 9.57 4.88 86.36 0.42 9.99 16 16 C 0.14 5.87 2.07 45.07 0.09 5.96 16 17 H 0.06 2.78 7.58 -2.39 -0.02 2.76 16 18 N -0.69 -26.36 4.37 -444.58 -1.94 -28.30 16 19 C 0.59 24.44 7.81 86.93 0.68 25.11 16 20 O -0.55 -27.27 15.75 -3.72 -0.06 -27.33 16 21 C -0.04 -1.35 7.19 42.55 0.31 -1.05 16 22 N -0.35 -10.69 11.89 -48.95 -0.58 -11.27 16 23 O 0.14 3.40 11.18 78.69 0.88 4.28 16 24 C -0.02 -0.38 7.38 24.99 0.18 -0.19 16 25 C -0.18 -5.03 6.04 -20.05 -0.12 -5.16 16 26 C -0.05 -1.25 5.66 29.83 0.17 -1.08 16 27 C -0.12 -1.89 5.92 30.82 0.18 -1.70 16 28 C -0.11 -1.04 5.88 30.78 0.18 -0.86 16 29 C -0.03 -0.32 6.31 29.96 0.19 -0.13 16 30 H 0.05 1.32 7.35 -2.39 -0.02 1.30 16 31 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 37 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.04 2.82 6.06 -2.39 -0.01 2.81 16 39 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.41 13.47 8.07 -92.71 -0.75 12.72 16 41 H 0.08 2.03 8.14 -2.38 -0.02 2.02 16 42 H 0.05 1.81 7.84 -2.39 -0.02 1.79 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 45 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 46 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -79.33 380.08 3.55 -75.78 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.22 Total: 19.72 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 4.86 Total: 10.69 kcal Atomic # 7 Polarization: -129.02 SS G_CDS: -4.37 Total: -133.39 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.82 Total: -23.05 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -79.33 3.55 -75.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968349224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.164 kcal (2) G-P(sol) polarization free energy of solvation -79.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds