Wall clock time and date at job start Tue Mar 31 2020 17:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.45014 * 2 1 4 4 C 1.53041 * 109.45997 * 119.96914 * 2 1 3 5 5 C 1.52757 * 109.38269 * 181.25956 * 4 2 1 6 6 N 1.46927 * 109.00935 * 305.58851 * 5 4 2 7 7 C 1.36938 * 120.62991 * 233.58501 * 6 5 4 8 8 H 1.08002 * 119.99864 * 152.50943 * 7 6 5 9 9 C 1.38813 * 119.99981 * 332.78113 * 7 6 5 10 10 N 1.31620 * 119.99609 * 159.13521 * 9 7 6 11 11 Si 1.86793 * 120.00026 * 339.13733 * 9 7 6 12 12 H 1.48507 * 109.47258 * 93.09371 * 11 9 7 13 13 H 1.48498 * 109.47125 * 213.08933 * 11 9 7 14 14 H 1.48504 * 109.47196 * 333.09570 * 11 9 7 15 15 C 1.46926 * 118.73934 * 53.30929 * 6 5 4 16 16 C 1.53040 * 109.45799 * 240.03521 * 2 1 3 17 17 H 1.08997 * 109.52954 * 298.58395 * 16 2 1 18 18 N 1.46508 * 109.49965 * 58.66498 * 16 2 1 19 19 C 1.34774 * 120.00196 * 204.83684 * 18 16 2 20 20 O 1.21607 * 119.99881 * 0.02562 * 19 18 16 21 21 C 1.47420 * 119.99803 * 179.97438 * 19 18 16 22 22 C 1.36098 * 126.44578 * 180.02562 * 21 19 18 23 23 O 1.34249 * 106.94563 * 180.02562 * 22 21 19 24 24 C 1.34051 * 108.23404 * 0.02562 * 23 22 21 25 25 C 1.50692 * 125.38256 * 179.97438 * 24 23 22 26 26 C 1.53000 * 109.47435 * 269.97653 * 25 24 23 27 27 C 1.53001 * 117.50152 * 243.74841 * 26 25 24 28 28 C 1.52997 * 117.50241 * 175.08646 * 26 25 24 29 29 N 1.29946 * 109.23744 * 359.72025 * 24 23 22 30 30 H 1.09005 * 109.46494 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47018 * 299.96291 * 1 2 3 32 32 H 1.09000 * 109.47037 * 59.96739 * 1 2 3 33 33 H 1.08996 * 109.49657 * 301.33763 * 4 2 1 34 34 H 1.09000 * 109.49571 * 61.43546 * 4 2 1 35 35 H 1.08999 * 109.51074 * 185.70606 * 5 4 2 36 36 H 1.08997 * 109.43523 * 65.42127 * 5 4 2 37 37 H 0.97003 * 119.99825 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.58898 * 66.43000 * 15 6 5 39 39 H 1.08999 * 109.58704 * 186.71632 * 15 6 5 40 40 H 0.97000 * 119.99388 * 24.83235 * 18 16 2 41 41 H 1.07996 * 126.51990 * 0.03107 * 22 21 19 42 42 H 1.08997 * 109.47307 * 29.97719 * 25 24 23 43 43 H 1.08998 * 109.47191 * 149.97698 * 25 24 23 44 44 H 1.09010 * 115.54737 * 29.41516 * 26 25 24 45 45 H 1.09005 * 117.49430 * 359.97438 * 27 26 25 46 46 H 1.08996 * 117.49731 * 145.01640 * 27 26 25 47 47 H 1.09000 * 117.50150 * 214.98301 * 28 26 25 48 48 H 1.09003 * 117.49677 * 359.97431 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5672 -0.6924 1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9758 -2.2740 -0.0001 8 1 5.0134 -2.9619 -0.8319 9 6 5.8438 -2.4325 1.0715 10 7 6.4152 -3.5981 1.2887 11 14 6.2008 -0.9915 2.2052 12 1 5.2684 -1.0277 3.3605 13 1 7.5997 -1.0820 2.6952 14 1 6.0180 0.2807 1.4613 15 6 3.5714 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6978 -1.7556 -1.2390 18 7 1.5256 -0.0486 -2.4460 19 6 1.4002 -0.7312 -3.6013 20 8 1.7135 -1.9052 -3.6510 21 6 0.8822 -0.0550 -4.8045 22 6 0.7021 -0.6144 -6.0320 23 8 0.2154 0.3470 -6.8326 24 6 0.0993 1.4725 -6.1138 25 6 -0.4096 2.7919 -6.6345 26 6 0.7621 3.6121 -7.1778 27 6 1.0878 4.9309 -6.4740 28 6 0.4372 4.9427 -7.8595 29 7 0.4900 1.2447 -4.8956 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5132 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6573 -0.2208 2.1398 34 1 1.6979 -1.7557 1.2382 35 1 3.9347 -1.2909 2.0978 36 1 3.9098 0.3367 1.3715 37 1 7.0220 -3.7088 2.0373 38 1 3.9143 0.3410 -1.3674 39 1 3.9438 -1.2830 -2.0987 40 1 1.2753 0.8877 -2.4062 41 1 0.9109 -1.6371 -6.3091 42 1 -1.1298 2.6139 -7.4331 43 1 -0.8925 3.3399 -5.8254 44 1 1.5967 3.0339 -7.5746 45 1 0.4670 5.2145 -5.6240 46 1 2.1365 5.2206 -6.4081 47 1 1.0580 5.2402 -8.7045 48 1 -0.6115 5.2336 -7.9212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968486994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:53 Heat of formation + Delta-G solvation = 29.271036 kcal Electronic energy + Delta-G solvation = -28797.674888 eV Core-core repulsion = 24855.635015 eV Total energy + Delta-G solvation = -3942.039874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.64273 -39.73148 -38.05284 -37.83828 -35.06804 -34.60357 -33.04261 -32.11560 -31.38023 -29.47080 -28.21888 -27.59681 -24.70209 -23.67957 -22.81220 -22.53093 -22.08755 -21.27015 -20.99741 -20.25580 -19.64424 -18.13176 -17.02651 -16.81125 -16.68462 -16.16137 -15.74824 -15.14407 -14.87494 -14.69284 -14.64886 -13.94287 -13.89671 -13.82177 -13.68968 -13.41118 -13.25511 -13.16979 -12.61392 -12.22201 -12.16882 -12.07011 -11.94350 -11.66539 -11.44729 -11.26529 -11.04223 -10.92489 -10.86774 -10.84736 -10.62117 -10.48519 -10.13343 -10.05958 -9.83988 -9.67219 -9.41148 -9.23100 -8.95000 -8.48283 -6.93994 -5.89628 -3.25787 0.95831 1.82941 2.30310 3.15561 3.33517 3.34389 3.37619 3.51041 3.54381 3.60277 4.24308 4.41992 4.46429 4.56907 4.62968 4.66881 4.85265 4.99305 5.05250 5.07431 5.11545 5.18505 5.22908 5.29735 5.35333 5.45538 5.47164 5.50156 5.68237 5.71977 5.77977 5.83770 5.85080 5.89092 5.97616 6.06355 6.15813 6.31470 6.38085 6.52584 6.55377 6.63454 6.67938 6.79813 6.97616 7.24208 7.72035 8.00565 8.32739 8.39684 8.98958 9.76620 10.12491 11.26333 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.002640 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.484815 B =10604.919218 C =10788.111952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.126 4.126 5 C 0.121 3.879 6 N -0.601 5.601 7 C -0.257 4.257 8 H 0.087 0.913 9 C 0.023 3.977 10 N -0.908 5.908 11 Si 0.883 3.117 12 H -0.288 1.288 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.144 3.856 16 C 0.131 3.869 17 H 0.092 0.908 18 N -0.701 5.701 19 C 0.597 3.403 20 O -0.529 6.529 21 C -0.065 4.065 22 C 0.009 3.991 23 O -0.197 6.197 24 C 0.197 3.803 25 C 0.009 3.991 26 C -0.157 4.157 27 C -0.172 4.172 28 C -0.174 4.174 29 N -0.454 5.454 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.023 0.977 39 H 0.068 0.932 40 H 0.404 0.596 41 H 0.232 0.768 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.353 16.566 -15.990 28.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.325 5.325 7 C -0.385 4.385 8 H 0.104 0.896 9 C -0.176 4.176 10 N -0.551 5.551 11 Si 0.714 3.286 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.196 1.196 15 C 0.017 3.983 16 C 0.026 3.974 17 H 0.110 0.890 18 N -0.351 5.351 19 C 0.381 3.619 20 O -0.406 6.406 21 C -0.186 4.186 22 C -0.064 4.064 23 O -0.083 6.083 24 C -0.012 4.012 25 C -0.029 4.029 26 C -0.176 4.176 27 C -0.209 4.209 28 C -0.211 4.211 29 N -0.184 5.184 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.086 0.914 40 H 0.238 0.762 41 H 0.248 0.752 42 H 0.117 0.883 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.983 16.045 -15.440 28.005 hybrid contribution 0.275 0.594 0.229 0.694 sum -16.709 16.639 -15.211 28.061 Atomic orbital electron populations 1.21842 0.95472 1.01822 1.01038 1.21297 0.95133 0.99627 0.95000 0.91252 1.22000 0.98299 1.00700 0.95576 1.21321 0.91782 0.97031 0.90255 1.44281 1.48504 1.40638 0.99032 1.18952 1.09763 1.02592 1.07240 0.89572 1.25251 0.97535 0.96670 0.98136 1.69849 1.32965 1.21782 1.30501 0.86946 0.76237 0.84862 0.80584 1.21626 1.23223 1.19613 1.21218 0.90241 0.96879 0.89973 1.21793 0.96427 0.97342 0.81857 0.88956 1.45877 1.64748 1.14765 1.09738 1.16729 0.77977 0.85592 0.81607 1.90878 1.50341 1.15122 1.84236 1.21947 1.09088 0.90991 0.96539 1.25329 0.97775 0.94558 0.88767 1.84379 1.63309 1.19153 1.41442 1.26088 1.00462 0.89184 0.85498 1.19683 0.96640 0.84880 1.01670 1.22156 1.00038 0.90143 1.05249 1.23105 1.02185 0.99718 0.95847 1.23030 1.02057 0.99475 0.96549 1.70760 1.14398 1.14626 1.18639 0.92714 0.92835 0.93040 0.92142 0.91358 0.90720 0.95682 0.92813 0.95919 0.91376 0.76155 0.75230 0.88278 0.87306 0.87410 0.88209 0.88514 0.88457 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.02 37.16 0.34 -1.50 16 2 C -0.09 -1.41 2.27 -90.57 -0.21 -1.61 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.13 -2.21 5.34 -26.83 -0.14 -2.35 16 5 C 0.12 2.66 4.18 -3.93 -0.02 2.65 16 6 N -0.60 -14.75 2.78 -172.58 -0.48 -15.23 16 7 C -0.26 -7.45 10.03 -15.06 -0.15 -7.61 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 10 N -0.91 -28.45 13.97 55.49 0.78 -27.68 16 11 Si 0.88 22.73 24.35 -169.99 -4.14 18.59 16 12 H -0.29 -7.10 6.62 56.52 0.37 -6.73 16 13 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 14 H -0.27 -6.85 6.64 56.52 0.38 -6.48 16 15 C 0.14 3.06 6.09 -3.71 -0.02 3.03 16 16 C 0.13 2.31 2.06 -67.80 -0.14 2.17 16 17 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 18 N -0.70 -10.65 4.37 -54.76 -0.24 -10.89 16 19 C 0.60 9.67 7.78 -12.52 -0.10 9.58 16 20 O -0.53 -10.37 16.55 5.27 0.09 -10.28 16 21 C -0.07 -0.88 6.99 -83.02 -0.58 -1.46 16 22 C 0.01 0.10 11.95 29.96 0.36 0.46 16 23 O -0.20 -2.00 10.73 6.53 0.07 -1.93 16 24 C 0.20 1.93 7.51 -13.08 -0.10 1.84 16 25 C 0.01 0.06 6.12 -27.89 -0.17 -0.12 16 26 C -0.16 -0.97 5.72 -90.62 -0.52 -1.49 16 27 C -0.17 -1.01 10.18 -26.69 -0.27 -1.29 16 28 C -0.17 -0.82 10.25 -26.70 -0.27 -1.10 16 29 N -0.45 -5.52 11.06 -7.65 -0.08 -5.61 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.61 7.35 -51.93 -0.38 0.23 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.79 4.49 -51.93 -0.23 1.56 16 36 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 37 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 1.57 7.93 -51.93 -0.41 1.16 16 40 H 0.40 5.35 8.03 -40.82 -0.33 5.02 16 41 H 0.23 1.96 8.06 -52.49 -0.42 1.53 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.11 0.56 7.88 -51.93 -0.41 0.15 16 44 H 0.11 0.78 8.07 -51.92 -0.42 0.36 16 45 H 0.10 0.54 8.03 -51.93 -0.42 0.13 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 387.20 15.07 5.84 5.84 Total: -1.00 -34.25 387.20 -7.89 -42.14 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.62 Total: 3.27 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.09 Total: 1.78 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.03 Total: -59.41 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.16 Total: -12.22 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.14 Total: 18.59 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.25 -7.89 -42.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968486994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.411 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds