Wall clock time and date at job start Tue Mar 31 2020 17:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.45014 * 2 1 4 4 C 1.53041 * 109.45997 * 119.96914 * 2 1 3 5 5 C 1.52757 * 109.38269 * 181.25956 * 4 2 1 6 6 N 1.46927 * 109.00935 * 305.58851 * 5 4 2 7 7 C 1.36938 * 120.62991 * 233.58501 * 6 5 4 8 8 H 1.08002 * 119.99864 * 152.50943 * 7 6 5 9 9 C 1.38813 * 119.99981 * 332.78113 * 7 6 5 10 10 N 1.31620 * 119.99609 * 159.13521 * 9 7 6 11 11 Si 1.86793 * 120.00026 * 339.13733 * 9 7 6 12 12 H 1.48507 * 109.47258 * 93.09371 * 11 9 7 13 13 H 1.48498 * 109.47125 * 213.08933 * 11 9 7 14 14 H 1.48504 * 109.47196 * 333.09570 * 11 9 7 15 15 C 1.46926 * 118.73934 * 53.30929 * 6 5 4 16 16 C 1.53040 * 109.45799 * 240.03521 * 2 1 3 17 17 H 1.08997 * 109.52954 * 298.58395 * 16 2 1 18 18 N 1.46508 * 109.49965 * 58.66498 * 16 2 1 19 19 C 1.34774 * 120.00196 * 204.83684 * 18 16 2 20 20 O 1.21607 * 119.99881 * 0.02562 * 19 18 16 21 21 C 1.47420 * 119.99803 * 179.97438 * 19 18 16 22 22 C 1.36098 * 126.44578 * 180.02562 * 21 19 18 23 23 O 1.34249 * 106.94563 * 180.02562 * 22 21 19 24 24 C 1.34051 * 108.23404 * 0.02562 * 23 22 21 25 25 C 1.50692 * 125.38256 * 179.97438 * 24 23 22 26 26 C 1.53000 * 109.47435 * 269.97653 * 25 24 23 27 27 C 1.53001 * 117.50152 * 243.74841 * 26 25 24 28 28 C 1.52997 * 117.50241 * 175.08646 * 26 25 24 29 29 N 1.29946 * 109.23744 * 359.72025 * 24 23 22 30 30 H 1.09005 * 109.46494 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47018 * 299.96291 * 1 2 3 32 32 H 1.09000 * 109.47037 * 59.96739 * 1 2 3 33 33 H 1.08996 * 109.49657 * 301.33763 * 4 2 1 34 34 H 1.09000 * 109.49571 * 61.43546 * 4 2 1 35 35 H 1.08999 * 109.51074 * 185.70606 * 5 4 2 36 36 H 1.08997 * 109.43523 * 65.42127 * 5 4 2 37 37 H 0.97003 * 119.99825 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.58898 * 66.43000 * 15 6 5 39 39 H 1.08999 * 109.58704 * 186.71632 * 15 6 5 40 40 H 0.97000 * 119.99388 * 24.83235 * 18 16 2 41 41 H 1.07996 * 126.51990 * 0.03107 * 22 21 19 42 42 H 1.08997 * 109.47307 * 29.97719 * 25 24 23 43 43 H 1.08998 * 109.47191 * 149.97698 * 25 24 23 44 44 H 1.09010 * 115.54737 * 29.41516 * 26 25 24 45 45 H 1.09005 * 117.49430 * 359.97438 * 27 26 25 46 46 H 1.08996 * 117.49731 * 145.01640 * 27 26 25 47 47 H 1.09000 * 117.50150 * 214.98301 * 28 26 25 48 48 H 1.09003 * 117.49677 * 359.97431 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5672 -0.6924 1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9758 -2.2740 -0.0001 8 1 5.0134 -2.9619 -0.8319 9 6 5.8438 -2.4325 1.0715 10 7 6.4152 -3.5981 1.2887 11 14 6.2008 -0.9915 2.2052 12 1 5.2684 -1.0277 3.3605 13 1 7.5997 -1.0820 2.6952 14 1 6.0180 0.2807 1.4613 15 6 3.5714 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6978 -1.7556 -1.2390 18 7 1.5256 -0.0486 -2.4460 19 6 1.4002 -0.7312 -3.6013 20 8 1.7135 -1.9052 -3.6510 21 6 0.8822 -0.0550 -4.8045 22 6 0.7021 -0.6144 -6.0320 23 8 0.2154 0.3470 -6.8326 24 6 0.0993 1.4725 -6.1138 25 6 -0.4096 2.7919 -6.6345 26 6 0.7621 3.6121 -7.1778 27 6 1.0878 4.9309 -6.4740 28 6 0.4372 4.9427 -7.8595 29 7 0.4900 1.2447 -4.8956 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5132 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6573 -0.2208 2.1398 34 1 1.6979 -1.7557 1.2382 35 1 3.9347 -1.2909 2.0978 36 1 3.9098 0.3367 1.3715 37 1 7.0220 -3.7088 2.0373 38 1 3.9143 0.3410 -1.3674 39 1 3.9438 -1.2830 -2.0987 40 1 1.2753 0.8877 -2.4062 41 1 0.9109 -1.6371 -6.3091 42 1 -1.1298 2.6139 -7.4331 43 1 -0.8925 3.3399 -5.8254 44 1 1.5967 3.0339 -7.5746 45 1 0.4670 5.2145 -5.6240 46 1 2.1365 5.2206 -6.4081 47 1 1.0580 5.2402 -8.7045 48 1 -0.6115 5.2336 -7.9212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968486994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:53 Heat of formation + Delta-G solvation = 4.018573 kcal Electronic energy + Delta-G solvation = -28798.769917 eV Core-core repulsion = 24855.635015 eV Total energy + Delta-G solvation = -3943.134903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.50650 -41.11911 -39.38284 -38.46504 -36.34403 -35.94528 -34.54571 -33.43193 -32.85434 -30.97407 -29.28281 -28.88492 -26.14232 -25.28096 -23.81687 -23.20479 -22.95554 -22.87026 -21.78462 -21.44807 -20.96557 -19.21222 -18.80947 -17.86765 -17.60001 -17.41451 -16.99891 -16.66825 -16.31894 -15.68886 -15.63139 -15.29043 -15.20214 -15.09336 -14.89433 -14.65358 -14.51185 -14.42117 -13.81071 -13.73401 -13.62510 -13.32436 -12.77430 -12.73327 -12.65444 -12.52954 -12.31597 -12.27469 -12.22616 -11.94688 -11.82123 -11.64524 -11.51604 -11.33674 -11.28522 -11.21627 -10.88332 -10.80651 -10.29880 -10.02689 -8.96194 -8.18924 -5.52953 0.02338 0.90543 1.28950 1.40955 1.50678 1.51465 1.97081 2.18668 2.40034 2.73945 2.93450 3.03292 3.31492 3.61835 3.70817 3.75406 3.81596 3.88713 3.97779 4.03304 4.11695 4.27241 4.28423 4.36579 4.44111 4.48605 4.54660 4.58517 4.70475 4.75278 4.79340 4.81592 4.87790 4.91940 4.95652 4.97591 5.04241 5.09443 5.12405 5.12712 5.28344 5.30425 5.32394 5.37184 5.52295 5.82156 6.08850 6.27046 6.57174 6.86612 7.08768 7.57310 7.95589 9.01301 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.002640 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.484815 B =10604.919218 C =10788.111952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.090 0.910 4 C -0.119 4.119 5 C 0.114 3.886 6 N -0.615 5.615 7 C -0.256 4.256 8 H 0.037 0.963 9 C -0.036 4.036 10 N -0.958 5.958 11 Si 0.957 3.043 12 H -0.265 1.265 13 H -0.310 1.310 14 H -0.259 1.259 15 C 0.145 3.855 16 C 0.146 3.854 17 H 0.059 0.941 18 N -0.689 5.689 19 C 0.596 3.404 20 O -0.574 6.574 21 C -0.094 4.094 22 C 0.025 3.975 23 O -0.193 6.193 24 C 0.207 3.793 25 C 0.012 3.988 26 C -0.167 4.167 27 C -0.183 4.183 28 C -0.157 4.157 29 N -0.472 5.472 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.039 0.961 39 H 0.033 0.967 40 H 0.417 0.583 41 H 0.250 0.750 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.993 20.470 -15.993 32.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.103 4.103 3 H 0.108 0.892 4 C -0.159 4.159 5 C -0.011 4.011 6 N -0.340 5.340 7 C -0.385 4.385 8 H 0.055 0.945 9 C -0.231 4.231 10 N -0.604 5.604 11 Si 0.785 3.215 12 H -0.192 1.192 13 H -0.239 1.239 14 H -0.183 1.183 15 C 0.019 3.981 16 C 0.039 3.961 17 H 0.078 0.922 18 N -0.339 5.339 19 C 0.382 3.618 20 O -0.453 6.453 21 C -0.213 4.213 22 C -0.050 4.050 23 O -0.078 6.078 24 C -0.002 4.002 25 C -0.025 4.025 26 C -0.186 4.186 27 C -0.220 4.220 28 C -0.194 4.194 29 N -0.202 5.202 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.254 0.746 41 H 0.266 0.734 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.111 0.889 45 H 0.124 0.876 46 H 0.107 0.893 47 H 0.119 0.881 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.676 20.017 -15.445 32.037 hybrid contribution 1.082 -0.649 0.060 1.263 sum -18.594 19.367 -15.385 30.944 Atomic orbital electron populations 1.21764 0.92861 1.01755 1.02896 1.21270 0.97160 0.99710 0.92137 0.89165 1.21925 0.94916 1.00701 0.98341 1.21469 0.94828 0.96893 0.87869 1.44341 1.48274 1.40134 1.01283 1.18774 1.11048 1.02912 1.05799 0.94484 1.25968 0.97449 0.99233 1.00415 1.69997 1.34336 1.24079 1.31957 0.85754 0.75766 0.80991 0.78993 1.19153 1.23900 1.18306 1.21254 0.92763 0.96485 0.87608 1.21379 0.93733 0.96624 0.84332 0.92231 1.45669 1.64195 1.15195 1.08848 1.17110 0.77072 0.85149 0.82460 1.90855 1.52308 1.17139 1.85031 1.21590 1.11509 0.92115 0.96121 1.25697 0.95915 0.95304 0.88046 1.84428 1.63053 1.19199 1.41162 1.26912 0.98593 0.89930 0.84804 1.19950 0.96884 0.82839 1.02873 1.22098 0.99892 0.90473 1.06173 1.23172 1.02115 0.99732 0.96991 1.23116 1.03012 0.97489 0.95796 1.70718 1.15587 1.13847 1.20008 0.93803 0.90242 0.91902 0.88268 0.93086 0.92924 0.93938 0.92777 0.94322 0.94874 0.74565 0.73387 0.85745 0.85941 0.88938 0.87606 0.89338 0.88139 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.02 71.98 0.65 -2.34 16 2 C -0.08 -2.35 2.27 -10.76 -0.02 -2.38 16 3 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.12 -3.89 5.34 30.53 0.16 -3.73 16 5 C 0.11 4.80 4.18 86.22 0.36 5.16 16 6 N -0.62 -30.81 2.78 -699.93 -1.94 -32.75 16 7 C -0.26 -15.60 10.03 84.03 0.84 -14.76 16 8 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 9 C -0.04 -2.20 5.23 84.86 0.44 -1.75 16 10 N -0.96 -62.62 13.97 21.65 0.30 -62.32 16 11 Si 0.96 47.47 24.35 68.60 1.67 49.14 16 12 H -0.27 -12.10 6.62 99.48 0.66 -11.44 16 13 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 14 H -0.26 -12.18 6.64 99.48 0.66 -11.52 16 15 C 0.15 6.32 6.09 86.36 0.53 6.85 16 16 C 0.15 5.14 2.06 45.07 0.09 5.23 16 17 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 18 N -0.69 -20.62 4.37 -445.42 -1.95 -22.56 16 19 C 0.60 19.69 7.78 86.66 0.67 20.37 16 20 O -0.57 -23.68 16.55 -4.05 -0.07 -23.75 16 21 C -0.09 -2.50 6.99 40.41 0.28 -2.21 16 22 C 0.02 0.52 11.95 67.32 0.80 1.33 16 23 O -0.19 -3.57 10.73 0.45 0.00 -3.56 16 24 C 0.21 3.65 7.51 88.39 0.66 4.31 16 25 C 0.01 0.11 6.12 29.85 0.18 0.29 16 26 C -0.17 -1.72 5.72 -10.79 -0.06 -1.79 16 27 C -0.18 -1.81 10.18 30.62 0.31 -1.50 16 28 C -0.16 -1.06 10.25 30.62 0.31 -0.74 16 29 N -0.47 -10.77 11.06 -293.03 -3.24 -14.01 16 30 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.26 7.35 -2.39 -0.02 1.24 16 33 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 2.45 4.49 -2.39 -0.01 2.44 16 36 H 0.04 1.67 7.08 -2.39 -0.02 1.65 16 37 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.03 1.63 7.93 -2.39 -0.02 1.61 16 40 H 0.42 10.31 8.03 -92.71 -0.74 9.56 16 41 H 0.25 4.07 8.06 -2.91 -0.02 4.05 16 42 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.12 0.84 7.88 -2.39 -0.02 0.82 16 44 H 0.09 1.24 8.07 -2.38 -0.02 1.22 16 45 H 0.11 0.90 8.03 -2.38 -0.02 0.89 16 46 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -79.56 387.20 1.14 -78.43 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.13 Total: 19.06 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 6.23 Total: 12.34 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -6.83 Total: -131.64 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.06 Total: -27.31 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.67 Total: 49.14 kcal Total: -79.56 1.14 -78.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968486994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.445 kcal (2) G-P(sol) polarization free energy of solvation -79.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds