Wall clock time and date at job start Tue Mar 31 2020 17:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.44480 * 2 1 4 4 C 1.53030 * 109.45980 * 240.02802 * 2 1 3 5 5 C 1.53197 * 109.31317 * 178.61412 * 4 2 1 6 6 N 1.46924 * 108.77260 * 54.63353 * 5 4 2 7 7 C 1.36945 * 120.62826 * 126.41474 * 6 5 4 8 8 H 1.08003 * 119.99818 * 332.60777 * 7 6 5 9 9 C 1.38813 * 119.99859 * 152.60607 * 7 6 5 10 10 N 1.31618 * 119.99715 * 159.34121 * 9 7 6 11 11 Si 1.86798 * 120.00193 * 339.34856 * 9 7 6 12 12 H 1.48492 * 109.47568 * 92.84941 * 11 9 7 13 13 H 1.48504 * 109.46915 * 212.85059 * 11 9 7 14 14 H 1.48504 * 109.47058 * 332.84946 * 11 9 7 15 15 C 1.46996 * 118.76051 * 306.39356 * 6 5 4 16 16 C 1.53040 * 109.45903 * 119.95959 * 2 1 3 17 17 H 1.09004 * 109.50014 * 301.36698 * 16 2 1 18 18 N 1.46497 * 109.49793 * 61.43394 * 16 2 1 19 19 C 1.34779 * 119.99973 * 204.65931 * 18 16 2 20 20 O 1.21604 * 120.00330 * 0.27672 * 19 18 16 21 21 C 1.47419 * 119.99778 * 180.27702 * 19 18 16 22 22 C 1.36089 * 126.44836 * 180.02562 * 21 19 18 23 23 O 1.34255 * 106.95071 * 179.97438 * 22 21 19 24 24 C 1.34049 * 108.23030 * 359.97438 * 23 22 21 25 25 C 1.50697 * 125.38153 * 179.97438 * 24 23 22 26 26 C 1.53000 * 109.46949 * 269.97573 * 25 24 23 27 27 C 1.52998 * 117.49903 * 243.74453 * 26 25 24 28 28 C 1.53002 * 117.49466 * 175.08516 * 26 25 24 29 29 N 1.29939 * 109.23634 * 359.72268 * 24 23 22 30 30 H 1.09003 * 109.47267 * 300.04171 * 1 2 3 31 31 H 1.08997 * 109.47289 * 60.04041 * 1 2 3 32 32 H 1.09004 * 109.47147 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.49851 * 298.56497 * 4 2 1 34 34 H 1.09000 * 109.49948 * 58.66685 * 4 2 1 35 35 H 1.09001 * 109.58653 * 174.41944 * 5 4 2 36 36 H 1.09001 * 109.58833 * 294.70456 * 5 4 2 37 37 H 0.97000 * 120.00256 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.57819 * 293.83422 * 15 6 5 39 39 H 1.08995 * 109.63337 * 173.37779 * 15 6 5 40 40 H 0.97002 * 119.99817 * 24.93526 * 18 16 2 41 41 H 1.08002 * 126.52432 * 359.97438 * 22 21 19 42 42 H 1.08999 * 109.46997 * 29.97702 * 25 24 23 43 43 H 1.09001 * 109.47092 * 149.97769 * 25 24 23 44 44 H 1.09003 * 115.55295 * 29.41865 * 26 25 24 45 45 H 1.08998 * 117.50389 * 0.02562 * 27 26 25 46 46 H 1.09001 * 117.49899 * 145.02352 * 27 26 25 47 47 H 1.09009 * 117.50146 * 214.97912 * 28 26 25 48 48 H 1.08996 * 117.50335 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7208 -1.2499 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2487 0.0002 7 6 4.9764 -2.2734 0.0003 8 1 5.0128 -2.9629 -0.8302 9 6 5.8506 -2.4257 1.0678 10 7 6.4271 -3.5887 1.2854 11 14 6.2084 -0.9802 2.1956 12 1 5.2784 -1.0130 3.3528 13 1 7.6085 -1.0676 2.6831 14 1 6.0231 0.2891 1.4474 15 6 3.5713 -0.6884 1.2653 16 6 2.0398 -0.7206 1.2502 17 1 1.6568 -0.2208 2.1399 18 7 1.5801 -2.1115 1.2345 19 6 1.4581 -2.7940 2.3903 20 8 1.7248 -2.2537 3.4466 21 6 1.0013 -4.1955 2.3740 22 6 0.8317 -5.0033 3.4560 23 8 0.4059 -6.1903 2.9955 24 6 0.3152 -6.1140 1.6602 25 6 -0.1263 -7.2312 0.7504 26 6 1.0918 -8.0528 0.3237 27 6 1.4504 -8.0644 -1.1636 28 6 0.8390 -9.3081 -0.5137 29 7 0.6629 -4.9227 1.2749 30 1 -0.3634 0.5145 0.8896 31 1 -0.3634 0.5132 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6978 -1.7557 -1.2380 34 1 1.6572 -0.2209 -2.1397 35 1 3.9417 -1.2847 -2.0982 36 1 3.9143 0.3406 -1.3699 37 1 7.0383 -3.6951 2.0311 38 1 3.9141 0.3411 1.3682 39 1 3.9411 -1.2841 2.0998 40 1 1.3673 -2.5425 0.3919 41 1 1.0064 -4.7396 4.4887 42 1 -0.8307 -7.8734 1.2790 43 1 -0.6089 -6.8117 -0.1324 44 1 1.9132 -8.0825 1.0397 45 1 0.8188 -7.4863 -1.8382 46 1 2.5077 -8.1019 -1.4262 47 1 1.4943 -10.1636 -0.3490 48 1 -0.1950 -9.5489 -0.7603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968487006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:01 Heat of formation + Delta-G solvation = 6.017609 kcal Electronic energy + Delta-G solvation = -30041.848356 eV Core-core repulsion = 26098.800138 eV Total energy + Delta-G solvation = -3943.048218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.48194 -41.19215 -39.25533 -38.47843 -36.09210 -35.90573 -34.34464 -33.31520 -32.84460 -31.19481 -29.21723 -28.86893 -25.95323 -25.40586 -24.01034 -23.22331 -22.94134 -22.84309 -21.99728 -21.28047 -20.38913 -19.38079 -18.76916 -17.85739 -17.69236 -17.30592 -16.88185 -16.64157 -16.07818 -16.01967 -15.46441 -15.19131 -15.15697 -14.96553 -14.94173 -14.78954 -14.51367 -14.38180 -13.82363 -13.74621 -13.66582 -13.18674 -12.92028 -12.76951 -12.56375 -12.43256 -12.32641 -12.26956 -12.21138 -11.90363 -11.84973 -11.71047 -11.43861 -11.32247 -11.23764 -11.15888 -10.88997 -10.77638 -10.21167 -9.94961 -8.89676 -8.20081 -5.48461 0.04130 0.94039 1.27261 1.30480 1.39428 1.52194 2.04957 2.32955 2.37992 2.79186 2.93088 3.01772 3.33955 3.62718 3.74428 3.77671 3.81260 3.91352 4.00369 4.00497 4.11320 4.26129 4.30551 4.43734 4.48345 4.57486 4.61167 4.63013 4.68465 4.69902 4.74687 4.83436 4.85209 4.86623 4.99659 5.02879 5.09725 5.11580 5.17141 5.19007 5.25895 5.31118 5.40064 5.47067 5.55875 5.84991 6.09297 6.31887 6.60895 6.89765 7.12624 7.61234 8.01659 8.99597 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.004393 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.248090 B = 6372.788897 C = 6939.128015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.097 0.903 4 C -0.121 4.121 5 C 0.139 3.861 6 N -0.611 5.611 7 C -0.231 4.231 8 H 0.054 0.946 9 C -0.032 4.032 10 N -0.955 5.955 11 Si 0.934 3.066 12 H -0.295 1.295 13 H -0.311 1.311 14 H -0.253 1.253 15 C 0.111 3.889 16 C 0.135 3.865 17 H 0.083 0.917 18 N -0.674 5.674 19 C 0.593 3.407 20 O -0.581 6.581 21 C -0.096 4.096 22 C 0.018 3.982 23 O -0.193 6.193 24 C 0.204 3.796 25 C 0.017 3.983 26 C -0.173 4.173 27 C -0.188 4.188 28 C -0.145 4.145 29 N -0.475 5.475 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.257 0.743 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.410 0.590 41 H 0.252 0.748 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.100 0.900 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.707 -4.183 -3.973 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.115 0.885 4 C -0.159 4.159 5 C 0.015 3.985 6 N -0.336 5.336 7 C -0.361 4.361 8 H 0.071 0.929 9 C -0.227 4.227 10 N -0.602 5.602 11 Si 0.765 3.235 12 H -0.223 1.223 13 H -0.240 1.240 14 H -0.177 1.177 15 C -0.016 4.016 16 C 0.029 3.971 17 H 0.101 0.899 18 N -0.323 5.323 19 C 0.379 3.621 20 O -0.462 6.462 21 C -0.215 4.215 22 C -0.057 4.057 23 O -0.079 6.079 24 C -0.006 4.006 25 C -0.021 4.021 26 C -0.192 4.192 27 C -0.225 4.225 28 C -0.181 4.181 29 N -0.205 5.205 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.247 0.753 41 H 0.267 0.733 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.100 0.900 45 H 0.126 0.874 46 H 0.097 0.903 47 H 0.119 0.881 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.416 -3.633 -3.851 20.125 hybrid contribution 1.353 0.064 1.457 1.989 sum -18.063 -3.569 -2.395 18.567 Atomic orbital electron populations 1.21759 0.93054 1.01774 1.02717 1.21314 0.97012 0.99690 0.92449 0.88522 1.21990 0.95629 1.00195 0.98130 1.21205 0.93552 0.96915 0.86850 1.44399 1.48161 1.39784 1.01244 1.18772 1.09097 1.02687 1.05499 0.92872 1.25778 0.98393 0.98346 1.00141 1.69961 1.34531 1.23806 1.31868 0.86088 0.75112 0.82998 0.79337 1.22319 1.23980 1.17658 1.21761 0.94124 0.96756 0.88923 1.21557 0.93823 0.81444 1.00278 0.89946 1.45601 1.64680 1.13507 1.08505 1.17062 0.76842 0.83841 0.84316 1.90741 1.53637 1.69914 1.31909 1.21770 1.11516 0.97320 0.90895 1.25646 0.97178 0.81380 1.01449 1.84388 1.64705 1.34251 1.24523 1.26995 0.98655 0.95341 0.79633 1.19947 0.96922 0.89285 0.95929 1.22099 0.99453 1.02581 0.95097 1.23141 1.01778 1.02936 0.94662 1.23118 1.03537 0.90782 1.00691 1.70707 1.15948 1.04058 1.29765 0.92558 0.90138 0.93524 0.93155 0.88257 0.92518 0.94123 0.93459 0.93997 0.94367 0.75273 0.73258 0.85107 0.85864 0.89957 0.87416 0.90283 0.88120 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.05 71.98 0.65 -2.25 16 2 C -0.09 -2.30 2.48 -10.77 -0.03 -2.33 16 3 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 4 C -0.12 -3.35 5.20 30.67 0.16 -3.19 16 5 C 0.14 5.05 6.52 86.36 0.56 5.62 16 6 N -0.61 -28.86 2.69 -698.91 -1.88 -30.74 16 7 C -0.23 -13.39 10.04 84.03 0.84 -12.55 16 8 H 0.05 3.36 8.06 -2.91 -0.02 3.33 16 9 C -0.03 -1.97 5.23 84.86 0.44 -1.53 16 10 N -0.95 -62.99 13.97 21.65 0.30 -62.69 16 11 Si 0.93 50.38 24.34 68.60 1.67 52.05 16 12 H -0.30 -16.28 6.62 99.48 0.66 -15.62 16 13 H -0.31 -16.87 7.11 99.48 0.71 -16.17 16 14 H -0.25 -12.64 6.64 99.48 0.66 -11.98 16 15 C 0.11 5.02 3.80 86.35 0.33 5.34 16 16 C 0.14 4.92 2.23 45.07 0.10 5.02 16 17 H 0.08 3.00 7.58 -2.38 -0.02 2.98 16 18 N -0.67 -25.83 4.25 -445.44 -1.89 -27.72 16 19 C 0.59 24.78 7.78 86.66 0.67 25.46 16 20 O -0.58 -27.03 16.55 -4.04 -0.07 -27.10 16 21 C -0.10 -3.54 6.99 40.41 0.28 -3.26 16 22 C 0.02 0.53 11.94 67.32 0.80 1.34 16 23 O -0.19 -5.27 10.73 0.41 0.00 -5.26 16 24 C 0.20 5.53 7.51 88.39 0.66 6.19 16 25 C 0.02 0.29 6.12 29.85 0.18 0.47 16 26 C -0.17 -3.48 5.72 -10.79 -0.06 -3.54 16 27 C -0.19 -3.75 10.18 30.62 0.31 -3.44 16 28 C -0.14 -2.04 10.25 30.62 0.31 -1.73 16 29 N -0.48 -16.10 11.06 -293.04 -3.24 -19.34 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.08 7.54 -2.38 -0.02 1.06 16 33 H 0.05 1.53 6.40 -2.39 -0.02 1.51 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 38 H 0.04 1.82 7.08 -2.39 -0.02 1.80 16 39 H 0.04 2.07 4.50 -2.39 -0.01 2.06 16 40 H 0.41 15.15 6.37 -92.71 -0.59 14.56 16 41 H 0.25 6.07 8.06 -2.91 -0.02 6.05 16 42 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.12 1.78 7.88 -2.39 -0.02 1.76 16 44 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 45 H 0.11 1.91 8.03 -2.39 -0.02 1.89 16 46 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -79.83 384.08 1.42 -78.41 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.29 Total: 26.76 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 6.23 Total: 15.62 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -6.71 Total: -140.49 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.06 Total: -32.36 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 1.67 Total: 52.05 kcal Total: -79.83 1.42 -78.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968487006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.426 kcal (2) G-P(sol) polarization free energy of solvation -79.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds