Wall clock time and date at job start Tue Mar 31 2020 17:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.45092 * 2 1 4 4 C 1.53040 * 109.45913 * 240.04216 * 2 1 3 5 5 C 1.53194 * 109.31622 * 178.61274 * 4 2 1 6 6 N 1.46923 * 108.77440 * 54.62977 * 5 4 2 7 7 C 1.36935 * 120.63048 * 126.41789 * 6 5 4 8 8 H 1.07994 * 120.00210 * 331.83378 * 7 6 5 9 9 C 1.38818 * 120.00181 * 151.83441 * 7 6 5 10 10 N 1.31622 * 119.99959 * 343.06703 * 9 7 6 11 11 Si 1.86795 * 119.99937 * 163.06925 * 9 7 6 12 12 H 1.48503 * 109.47418 * 90.00091 * 11 9 7 13 13 H 1.48504 * 109.46941 * 209.99824 * 11 9 7 14 14 H 1.48500 * 109.47521 * 329.99905 * 11 9 7 15 15 C 1.46998 * 118.75772 * 306.39370 * 6 5 4 16 16 C 1.53040 * 109.46525 * 119.97064 * 2 1 3 17 17 H 1.09004 * 109.49424 * 301.37017 * 16 2 1 18 18 N 1.46499 * 109.49541 * 61.43507 * 16 2 1 19 19 C 1.34779 * 119.99618 * 204.93983 * 18 16 2 20 20 O 1.21609 * 120.00435 * 359.97438 * 19 18 16 21 21 C 1.47421 * 119.99876 * 180.02562 * 19 18 16 22 22 C 1.36085 * 126.44973 * 180.02562 * 21 19 18 23 23 O 1.34256 * 106.94973 * 179.97438 * 22 21 19 24 24 C 1.34042 * 108.22819 * 359.97438 * 23 22 21 25 25 C 1.50710 * 125.38023 * 180.02562 * 24 23 22 26 26 C 1.53781 * 113.61245 * 39.11394 * 25 24 23 27 27 C 1.53955 * 87.01831 * 220.04689 * 26 25 24 28 28 C 1.53777 * 113.61239 * 301.50652 * 25 24 23 29 29 N 1.29931 * 109.24680 * 0.02562 * 24 23 22 30 30 H 1.09003 * 109.47421 * 300.02851 * 1 2 3 31 31 H 1.08995 * 109.48012 * 60.03030 * 1 2 3 32 32 H 1.09000 * 109.46843 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.49440 * 298.56097 * 4 2 1 34 34 H 1.08998 * 109.50217 * 58.65973 * 4 2 1 35 35 H 1.09001 * 109.59083 * 174.41992 * 5 4 2 36 36 H 1.09003 * 109.58107 * 294.70221 * 5 4 2 37 37 H 0.96997 * 120.00155 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58151 * 293.83340 * 15 6 5 39 39 H 1.08997 * 109.63049 * 173.37697 * 15 6 5 40 40 H 0.96999 * 120.00277 * 24.93533 * 18 16 2 41 41 H 1.07998 * 126.52831 * 0.23475 * 22 21 19 42 42 H 1.09002 * 112.84842 * 170.31048 * 25 24 23 43 43 H 1.09000 * 113.61423 * 334.57026 * 26 25 24 44 44 H 1.09004 * 113.61335 * 105.47158 * 26 25 24 45 45 H 1.08996 * 113.53620 * 270.81169 * 27 26 25 46 46 H 1.09000 * 113.73679 * 139.94130 * 27 26 25 47 47 H 1.08996 * 113.61614 * 254.52732 * 28 25 24 48 48 H 1.09002 * 113.61726 * 25.43616 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0397 -0.7206 -1.2502 5 6 3.5713 -0.6884 -1.2645 6 7 4.0678 -1.2487 -0.0003 7 6 4.9764 -2.2732 -0.0004 8 1 5.0045 -2.9700 -0.8250 9 6 5.8614 -2.4162 1.0595 10 7 6.0659 -1.4126 1.8861 11 14 6.7621 -4.0330 1.3125 12 1 8.0467 -4.0059 0.5678 13 1 7.0330 -4.2275 2.7596 14 1 5.9230 -5.1509 0.8113 15 6 3.5714 -0.6886 1.2649 16 6 2.0399 -0.7208 1.2500 17 1 1.6568 -0.2212 2.1398 18 7 1.5802 -2.1117 1.2340 19 6 1.4530 -2.7926 2.3902 20 8 1.7201 -2.2526 3.4465 21 6 0.9910 -4.1925 2.3741 22 6 0.8158 -4.9985 3.4565 23 8 0.3866 -6.1844 2.9960 24 6 0.2993 -6.1089 1.6606 25 6 -0.1453 -7.2251 0.7507 26 6 -1.3102 -8.0543 1.3168 27 6 -0.5930 -9.2959 0.7564 28 6 0.7148 -8.4945 0.8674 29 7 0.6585 -4.9215 1.2743 30 1 -0.3634 0.5143 0.8897 31 1 -0.3635 0.5133 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6977 -1.7555 -1.2385 34 1 1.6571 -0.2205 -2.1399 35 1 3.9416 -1.2843 -2.0987 36 1 3.9141 0.3409 -1.3701 37 1 6.6845 -1.5124 2.6265 38 1 3.9142 0.3410 1.3680 39 1 3.9413 -1.2844 2.0993 40 1 1.3674 -2.5426 0.3914 41 1 0.9853 -4.7334 4.4896 42 1 -0.3019 -6.8967 -0.2767 43 1 -1.3693 -8.0381 2.4051 44 1 -2.2668 -7.8477 0.8368 45 1 -0.8732 -9.5345 -0.2695 46 1 -0.6322 -10.1613 1.4181 47 1 1.3906 -8.6429 0.0253 48 1 1.2104 -8.5990 1.8327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968517161.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:51 Heat of formation + Delta-G solvation = 22.611294 kcal Electronic energy + Delta-G solvation = -30008.676709 eV Core-core repulsion = 26066.348047 eV Total energy + Delta-G solvation = -3942.328662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.34464 -39.47152 -38.85223 -37.44526 -34.72311 -34.06998 -32.67357 -30.97828 -30.65085 -29.10176 -27.29223 -26.27254 -25.97956 -24.37238 -23.72403 -22.11032 -21.61126 -21.04102 -20.68803 -19.41817 -18.57933 -17.99498 -16.76894 -16.69129 -16.45585 -15.84000 -15.42408 -15.09720 -14.84825 -14.19962 -14.04688 -13.73911 -13.54693 -13.46188 -13.19591 -13.07531 -12.90075 -12.85230 -12.69857 -12.51800 -11.90082 -11.54084 -11.37200 -11.29096 -11.19907 -11.02978 -10.87914 -10.82352 -10.73769 -10.69165 -10.66733 -10.45809 -10.18970 -9.87959 -9.72323 -9.53218 -9.42677 -8.87616 -8.41059 -8.28570 -6.58687 -5.71901 -3.14031 1.27857 2.17841 2.60227 3.40040 3.47462 3.49431 3.56666 3.81373 3.95387 4.21184 4.30436 4.52036 4.54786 4.62443 4.97391 5.13541 5.25778 5.29997 5.31204 5.37570 5.39888 5.41310 5.47631 5.57218 5.61615 5.63615 5.65327 5.69624 5.80085 5.94530 5.98499 6.05722 6.08166 6.18184 6.20986 6.34194 6.41621 6.49661 6.59505 6.71512 6.80642 6.93845 7.05737 7.40169 7.58891 7.72406 7.86090 8.18707 8.52058 8.78113 9.26957 9.91220 10.47023 11.36217 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.004417 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.769443 B = 6337.305891 C = 7590.587017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.130 4.130 5 C 0.143 3.857 6 N -0.587 5.587 7 C -0.249 4.249 8 H 0.062 0.938 9 C 0.007 3.993 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.161 3.839 16 C 0.124 3.876 17 H 0.077 0.923 18 N -0.676 5.676 19 C 0.597 3.403 20 O -0.545 6.545 21 C -0.055 4.055 22 C -0.001 4.001 23 O -0.198 6.198 24 C 0.200 3.800 25 C -0.017 4.017 26 C -0.132 4.132 27 C -0.139 4.139 28 C -0.132 4.132 29 N -0.453 5.453 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.018 0.982 37 H 0.253 0.747 38 H 0.027 0.973 39 H 0.096 0.904 40 H 0.404 0.596 41 H 0.229 0.771 42 H 0.132 0.868 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.464 -9.914 -2.323 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.169 4.169 5 C 0.017 3.983 6 N -0.309 5.309 7 C -0.379 4.379 8 H 0.080 0.920 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.725 3.275 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.207 1.207 15 C 0.034 3.966 16 C 0.018 3.982 17 H 0.095 0.905 18 N -0.325 5.325 19 C 0.381 3.619 20 O -0.424 6.424 21 C -0.175 4.175 22 C -0.075 4.075 23 O -0.084 6.084 24 C -0.009 4.009 25 C -0.036 4.036 26 C -0.170 4.170 27 C -0.176 4.176 28 C -0.170 4.170 29 N -0.183 5.183 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.115 0.885 40 H 0.240 0.760 41 H 0.245 0.755 42 H 0.150 0.850 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.119 -9.290 -2.079 18.720 hybrid contribution 0.611 -1.088 0.561 1.368 sum -15.508 -10.377 -1.518 18.721 Atomic orbital electron populations 1.21851 0.96000 1.01457 1.00897 1.21303 0.94617 0.99825 0.95467 0.90354 1.22091 0.99214 0.99611 0.96033 1.20922 0.90705 0.96465 0.90224 1.43976 1.48203 1.39598 0.99165 1.19062 1.09460 1.02873 1.06500 0.91999 1.24978 0.97227 0.97104 0.99917 1.69995 1.37315 1.28914 1.18046 0.86417 0.79694 0.84261 0.77162 1.21387 1.21588 1.20692 1.21212 0.86526 0.97812 0.91020 1.21876 0.99087 0.80186 0.97065 0.90508 1.45633 1.64907 1.13732 1.08274 1.16642 0.77792 0.82739 0.84696 1.90791 1.52007 1.68701 1.30886 1.22009 1.08544 0.97836 0.89148 1.25229 0.99497 0.81709 1.01021 1.84291 1.65001 1.35035 1.24101 1.25991 1.00381 0.95055 0.79500 1.21258 0.97958 0.87698 0.96733 1.23049 0.97083 0.95151 1.01724 1.22846 0.95840 0.97054 1.01887 1.23026 0.97017 0.93346 1.03614 1.70777 1.14671 1.02814 1.29990 0.93139 0.93127 0.92981 0.92549 0.92765 0.92852 0.96433 0.93674 0.95539 0.88544 0.75972 0.75467 0.85016 0.89291 0.90364 0.89529 0.90706 0.90110 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.05 37.15 0.34 -1.65 16 2 C -0.09 -1.53 2.48 -90.58 -0.22 -1.75 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 4 C -0.13 -2.18 5.20 -26.61 -0.14 -2.31 16 5 C 0.14 2.95 6.52 -3.71 -0.02 2.93 16 6 N -0.59 -14.66 2.91 -172.26 -0.50 -15.16 16 7 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 8 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 9 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 10 N -0.90 -27.00 11.19 55.49 0.62 -26.38 16 11 Si 0.89 22.73 29.59 -169.99 -5.03 17.70 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.16 3.96 4.91 -3.67 -0.02 3.94 16 16 C 0.12 2.45 2.24 -67.81 -0.15 2.30 16 17 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 18 N -0.68 -13.30 4.25 -54.76 -0.23 -13.53 16 19 C 0.60 12.31 7.78 -12.52 -0.10 12.22 16 20 O -0.55 -12.53 16.55 5.27 0.09 -12.44 16 21 C -0.05 -0.99 6.99 -83.02 -0.58 -1.57 16 22 C 0.00 -0.02 11.94 29.96 0.36 0.34 16 23 O -0.20 -2.73 10.43 6.53 0.07 -2.66 16 24 C 0.20 2.78 7.32 -13.08 -0.10 2.68 16 25 C -0.02 -0.17 4.28 -90.96 -0.39 -0.56 16 26 C -0.13 -0.98 7.64 -25.83 -0.20 -1.18 16 27 C -0.14 -0.89 8.09 -25.82 -0.21 -1.10 16 28 C -0.13 -1.14 7.63 -25.92 -0.20 -1.33 16 29 N -0.45 -7.64 11.06 -7.65 -0.08 -7.73 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.73 7.54 -51.93 -0.39 0.34 16 33 H 0.06 0.97 6.40 -51.93 -0.33 0.64 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 2.79 6.06 -51.93 -0.31 2.47 16 40 H 0.40 7.67 6.37 -40.82 -0.26 7.41 16 41 H 0.23 2.76 8.06 -52.49 -0.42 2.34 16 42 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.09 0.70 7.85 -51.93 -0.41 0.30 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -33.21 385.51 -8.68 -41.88 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.55 Total: 6.55 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -1.86 Total: 5.95 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.20 Total: -62.79 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.16 Total: -15.10 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.21 -8.68 -41.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968517161.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.493 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds