Wall clock time and date at job start Tue Mar 31 2020 17:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47434 * 2 1 4 4 O 1.42905 * 109.47123 * 120.00147 * 2 1 3 5 5 C 1.35496 * 117.00215 * 89.99648 * 4 2 1 6 6 C 1.39169 * 119.52767 * 180.02562 * 5 4 2 7 7 C 1.37957 * 119.26298 * 179.71900 * 6 5 4 8 8 C 1.40281 * 118.35513 * 0.52247 * 7 6 5 9 9 C 1.47624 * 120.49636 * 179.74984 * 8 7 6 10 10 O 1.21578 * 119.99708 * 26.53231 * 9 8 7 11 11 N 1.34774 * 119.99900 * 206.53326 * 9 8 7 12 12 C 1.47424 * 125.65214 * 356.38462 * 11 9 8 13 13 C 1.54904 * 104.83566 * 155.91308 * 12 11 9 14 14 C 1.55157 * 101.58269 * 37.00924 * 13 12 11 15 15 H 1.08999 * 110.72103 * 83.04088 * 14 13 12 16 16 N 1.46502 * 110.72043 * 206.14165 * 14 13 12 17 17 C 1.36938 * 119.99523 * 271.15387 * 16 14 13 18 18 H 1.08002 * 120.00039 * 0.02562 * 17 16 14 19 19 C 1.38818 * 120.00019 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99571 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00170 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47198 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46937 * 300.00214 * 21 19 17 24 24 H 1.48498 * 109.47179 * 60.00002 * 21 19 17 25 25 C 1.47324 * 125.61523 * 176.61455 * 11 9 8 26 26 H 1.09006 * 109.84397 * 300.41505 * 25 11 9 27 27 C 1.52996 * 110.06220 * 61.67286 * 25 11 9 28 28 C 1.39526 * 119.00773 * 359.48272 * 8 7 6 29 29 N 1.31663 * 120.62492 * 0.24855 * 28 8 7 30 30 H 1.09005 * 109.47047 * 60.00245 * 1 2 3 31 31 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47215 * 300.00273 * 1 2 3 33 33 H 1.08997 * 109.47215 * 239.99727 * 2 1 3 34 34 H 1.09000 * 109.47169 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47053 * 300.00107 * 3 2 1 36 36 H 1.09005 * 109.46576 * 59.99936 * 3 2 1 37 37 H 1.08000 * 120.36595 * 0.02562 * 6 5 4 38 38 H 1.08001 * 120.82099 * 180.27902 * 7 6 5 39 39 H 1.09004 * 110.36756 * 37.07295 * 12 11 9 40 40 H 1.09003 * 110.36783 * 274.75065 * 12 11 9 41 41 H 1.09007 * 111.00286 * 278.93856 * 13 12 11 42 42 H 1.08999 * 111.00680 * 155.08572 * 13 12 11 43 43 H 0.96996 * 120.00458 * 91.15625 * 16 14 13 44 44 H 0.97000 * 120.00139 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47055 * 177.73353 * 27 25 11 46 46 H 1.08997 * 109.47297 * 297.73193 * 27 25 11 47 47 H 1.09004 * 109.47256 * 57.73700 * 27 25 11 48 48 H 1.07995 * 119.68676 * 180.27707 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2113 -2.0092 1.0655 6 6 2.6742 -2.7179 2.1701 7 6 2.8755 -4.0784 2.0626 8 6 2.6135 -4.6953 0.8302 9 6 2.8179 -6.1475 0.6609 10 8 2.7389 -6.8885 1.6215 11 7 3.0921 -6.6517 -0.5585 12 6 3.1424 -5.8823 -1.8151 13 6 4.0597 -6.7093 -2.7500 14 6 3.6630 -8.1607 -2.3717 15 1 2.7655 -8.4677 -2.9086 16 7 4.7668 -9.0862 -2.6391 17 6 4.8841 -9.6742 -3.8702 18 1 4.1632 -9.4554 -4.6441 19 6 5.9296 -10.5516 -4.1236 20 7 6.8078 -10.8185 -3.1803 21 14 6.0901 -11.3532 -5.8031 22 1 7.2804 -12.2409 -5.8163 23 1 4.8725 -12.1543 -6.0876 24 1 6.2445 -10.3020 -6.8406 25 6 3.3866 -8.0641 -0.8565 26 1 4.2661 -8.3846 -0.2979 27 6 2.1864 -8.9392 -0.4896 28 6 2.1515 -3.9168 -0.2314 29 7 1.9679 -2.6215 -0.0832 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.8690 -2.2091 3.1027 38 1 3.2298 -4.6537 2.9052 39 1 3.5708 -4.8956 -1.6389 40 1 2.1447 -5.7924 -2.2450 41 1 5.1111 -6.5220 -2.5314 42 1 3.8374 -6.5038 -3.7972 43 1 5.4144 -9.2824 -1.9442 44 1 7.5386 -11.4313 -3.3574 45 1 2.3991 -9.9758 -0.7510 46 1 1.9972 -8.8660 0.5813 47 1 1.3077 -8.5992 -1.0379 48 1 1.9420 -4.3811 -1.1837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986329424.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:58 Heat of formation + Delta-G solvation = -14.200191 kcal Electronic energy + Delta-G solvation = -28626.070501 eV Core-core repulsion = 24682.145573 eV Total energy + Delta-G solvation = -3943.924928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18320 -39.97399 -38.39347 -37.32840 -34.27553 -33.65739 -32.77533 -32.04478 -31.05354 -30.27920 -28.92979 -27.64967 -25.48484 -24.66695 -24.28569 -23.06422 -22.37900 -21.45430 -20.31629 -19.38141 -18.77111 -17.56493 -17.28169 -16.79022 -16.24259 -15.96772 -15.15458 -15.00854 -14.73317 -14.70178 -14.44872 -13.95028 -13.75563 -13.64943 -13.44240 -13.30703 -13.19232 -12.79233 -12.72500 -12.68317 -12.61927 -12.31493 -12.15832 -11.88994 -11.57749 -11.31089 -11.18676 -11.12047 -11.06196 -10.84652 -10.62407 -10.30708 -10.21846 -10.14636 -10.04149 -9.79184 -9.55624 -8.97273 -8.79557 -8.46840 -7.06602 -5.84084 -3.14815 0.57985 0.93368 2.64287 2.80479 3.02889 3.39827 3.44652 3.45712 3.59807 3.90537 4.42709 4.47425 4.52318 4.58135 4.60007 4.74904 4.78013 4.88866 4.93966 5.15970 5.16611 5.25753 5.29904 5.35195 5.38616 5.41727 5.44699 5.48981 5.58106 5.62661 5.73103 5.74926 5.80933 5.82503 5.92827 6.04036 6.08693 6.10747 6.25115 6.41728 6.54313 6.59211 6.68437 6.87945 6.91832 7.47216 7.62463 7.65770 8.23856 8.33172 9.44573 9.98589 10.33230 11.37929 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.002380 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.510365 B =11759.476035 C =12597.703949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 C -0.151 4.151 4 O -0.299 6.299 5 C 0.340 3.660 6 C -0.199 4.199 7 C 0.014 3.986 8 C -0.217 4.217 9 C 0.579 3.421 10 O -0.538 6.538 11 N -0.603 5.603 12 C 0.087 3.913 13 C -0.156 4.156 14 C 0.176 3.824 15 H 0.067 0.933 16 N -0.714 5.714 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.291 1.291 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.128 3.872 26 H 0.080 0.920 27 C -0.154 4.154 28 C 0.164 3.836 29 N -0.543 5.543 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.050 0.950 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.623 22.141 7.302 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.023 3.977 3 C -0.208 4.208 4 O -0.206 6.206 5 C 0.161 3.839 6 C -0.220 4.220 7 C -0.012 4.012 8 C -0.223 4.223 9 C 0.367 3.633 10 O -0.417 6.417 11 N -0.336 5.336 12 C -0.036 4.036 13 C -0.197 4.197 14 C 0.064 3.936 15 H 0.085 0.915 16 N -0.354 5.354 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.212 1.212 24 H -0.212 1.212 25 C 0.025 3.975 26 H 0.098 0.902 27 C -0.213 4.213 28 C 0.007 3.993 29 N -0.266 5.266 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.165 0.835 38 H 0.170 0.830 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.220 0.780 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -11.934 22.365 7.233 26.362 hybrid contribution 0.617 -0.892 -0.269 1.118 sum -11.317 21.473 6.965 25.252 Atomic orbital electron populations 1.22216 0.94734 1.03009 1.02645 1.22410 0.94507 0.92844 0.87932 1.21915 1.02080 0.93778 1.03033 1.86268 1.79520 1.15919 1.38921 1.20062 0.89410 0.84655 0.89768 1.21015 1.07648 0.93959 0.99341 1.21485 0.90401 0.92933 0.96332 1.20796 1.09895 0.95201 0.96368 1.17518 0.77157 0.86662 0.81935 1.90772 1.52043 1.60091 1.38773 1.48523 1.68419 1.10359 1.06275 1.22751 1.00070 0.95977 0.84808 1.23605 0.99474 0.98153 0.98468 1.21256 0.92824 0.89324 0.90173 0.91483 1.42338 1.28439 1.50707 1.13932 1.19154 1.08712 1.19990 0.89744 0.91017 1.24772 0.97780 1.00158 0.97904 1.69651 1.16379 1.39250 1.32422 0.86252 0.77093 0.79068 0.83636 1.21687 1.21171 1.21193 1.22032 0.98315 0.79103 0.98088 0.90244 1.22047 0.97053 1.00124 1.02030 1.23357 0.90068 0.87412 0.98460 1.67335 1.22658 1.12323 1.24309 0.90962 0.91901 0.92010 0.88967 0.91742 0.90371 0.91648 0.83523 0.83046 0.90743 0.91123 0.90495 0.90343 0.77961 0.93292 0.91028 0.91822 0.93058 0.80664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.53 37.15 0.35 -0.87 16 2 C 0.08 0.65 3.10 -26.73 -0.08 0.56 16 3 C -0.15 -0.91 9.56 37.16 0.36 -0.55 16 4 O -0.30 -3.07 9.75 -18.18 -0.18 -3.24 16 5 C 0.34 3.77 7.46 -16.95 -0.13 3.64 16 6 C -0.20 -2.02 10.02 -39.34 -0.39 -2.41 16 7 C 0.01 0.16 9.71 -38.92 -0.38 -0.22 16 8 C -0.22 -2.76 5.72 -104.82 -0.60 -3.36 16 9 C 0.58 8.98 7.48 -12.43 -0.09 8.88 16 10 O -0.54 -9.95 15.66 5.30 0.08 -9.87 16 11 N -0.60 -9.05 3.08 -163.98 -0.50 -9.56 16 12 C 0.09 1.08 5.02 -2.53 -0.01 1.07 16 13 C -0.16 -2.43 6.77 -24.59 -0.17 -2.59 16 14 C 0.18 3.24 3.12 -66.09 -0.21 3.04 16 15 H 0.07 1.23 7.81 -51.93 -0.41 0.82 16 16 N -0.71 -16.90 5.24 -51.65 -0.27 -17.17 16 17 C -0.25 -6.44 9.97 -15.06 -0.15 -6.59 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 21 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.13 2.20 3.24 -66.79 -0.22 1.98 16 26 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 27 C -0.15 -2.52 9.10 37.16 0.34 -2.19 16 28 C 0.16 1.86 9.12 -17.14 -0.16 1.70 16 29 N -0.54 -6.18 8.61 -12.96 -0.11 -6.30 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.83 6.97 -51.93 -0.36 0.46 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.15 1.57 7.94 -52.49 -0.42 1.15 16 39 H 0.07 0.83 6.15 -51.93 -0.32 0.51 16 40 H 0.07 0.73 7.31 -51.93 -0.38 0.35 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.39 9.91 7.53 -40.82 -0.31 9.60 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.06 1.08 6.82 -51.93 -0.35 0.73 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.18 1.72 4.53 -52.49 -0.24 1.48 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -31.13 389.07 -8.43 -39.55 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.38 Total: 8.91 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.63 Total: 1.75 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.16 Total: -59.61 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.13 -8.43 -39.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986329424.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.354 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds