Wall clock time and date at job start Tue Mar 31 2020 17:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47434 * 2 1 4 4 O 1.42905 * 109.47123 * 120.00147 * 2 1 3 5 5 C 1.35496 * 117.00215 * 89.99648 * 4 2 1 6 6 C 1.39169 * 119.52767 * 180.02562 * 5 4 2 7 7 C 1.37957 * 119.26298 * 179.71900 * 6 5 4 8 8 C 1.40281 * 118.35513 * 0.52247 * 7 6 5 9 9 C 1.47624 * 120.49636 * 179.74984 * 8 7 6 10 10 O 1.21578 * 119.99708 * 26.53231 * 9 8 7 11 11 N 1.34774 * 119.99900 * 206.53326 * 9 8 7 12 12 C 1.47424 * 125.65214 * 356.38462 * 11 9 8 13 13 C 1.54904 * 104.83566 * 155.91308 * 12 11 9 14 14 C 1.55157 * 101.58269 * 37.00924 * 13 12 11 15 15 H 1.08999 * 110.72103 * 83.04088 * 14 13 12 16 16 N 1.46502 * 110.72043 * 206.14165 * 14 13 12 17 17 C 1.36938 * 119.99523 * 271.15387 * 16 14 13 18 18 H 1.08002 * 120.00039 * 0.02562 * 17 16 14 19 19 C 1.38818 * 120.00019 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99571 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00170 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47198 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46937 * 300.00214 * 21 19 17 24 24 H 1.48498 * 109.47179 * 60.00002 * 21 19 17 25 25 C 1.47324 * 125.61523 * 176.61455 * 11 9 8 26 26 H 1.09006 * 109.84397 * 300.41505 * 25 11 9 27 27 C 1.52996 * 110.06220 * 61.67286 * 25 11 9 28 28 C 1.39526 * 119.00773 * 359.48272 * 8 7 6 29 29 N 1.31663 * 120.62492 * 0.24855 * 28 8 7 30 30 H 1.09005 * 109.47047 * 60.00245 * 1 2 3 31 31 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47215 * 300.00273 * 1 2 3 33 33 H 1.08997 * 109.47215 * 239.99727 * 2 1 3 34 34 H 1.09000 * 109.47169 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47053 * 300.00107 * 3 2 1 36 36 H 1.09005 * 109.46576 * 59.99936 * 3 2 1 37 37 H 1.08000 * 120.36595 * 0.02562 * 6 5 4 38 38 H 1.08001 * 120.82099 * 180.27902 * 7 6 5 39 39 H 1.09004 * 110.36756 * 37.07295 * 12 11 9 40 40 H 1.09003 * 110.36783 * 274.75065 * 12 11 9 41 41 H 1.09007 * 111.00286 * 278.93856 * 13 12 11 42 42 H 1.08999 * 111.00680 * 155.08572 * 13 12 11 43 43 H 0.96996 * 120.00458 * 91.15625 * 16 14 13 44 44 H 0.97000 * 120.00139 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47055 * 177.73353 * 27 25 11 46 46 H 1.08997 * 109.47297 * 297.73193 * 27 25 11 47 47 H 1.09004 * 109.47256 * 57.73700 * 27 25 11 48 48 H 1.07995 * 119.68676 * 180.27707 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2113 -2.0092 1.0655 6 6 2.6742 -2.7179 2.1701 7 6 2.8755 -4.0784 2.0626 8 6 2.6135 -4.6953 0.8302 9 6 2.8179 -6.1475 0.6609 10 8 2.7389 -6.8885 1.6215 11 7 3.0921 -6.6517 -0.5585 12 6 3.1424 -5.8823 -1.8151 13 6 4.0597 -6.7093 -2.7500 14 6 3.6630 -8.1607 -2.3717 15 1 2.7655 -8.4677 -2.9086 16 7 4.7668 -9.0862 -2.6391 17 6 4.8841 -9.6742 -3.8702 18 1 4.1632 -9.4554 -4.6441 19 6 5.9296 -10.5516 -4.1236 20 7 6.8078 -10.8185 -3.1803 21 14 6.0901 -11.3532 -5.8031 22 1 7.2804 -12.2409 -5.8163 23 1 4.8725 -12.1543 -6.0876 24 1 6.2445 -10.3020 -6.8406 25 6 3.3866 -8.0641 -0.8565 26 1 4.2661 -8.3846 -0.2979 27 6 2.1864 -8.9392 -0.4896 28 6 2.1515 -3.9168 -0.2314 29 7 1.9679 -2.6215 -0.0832 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.8690 -2.2091 3.1027 38 1 3.2298 -4.6537 2.9052 39 1 3.5708 -4.8956 -1.6389 40 1 2.1447 -5.7924 -2.2450 41 1 5.1111 -6.5220 -2.5314 42 1 3.8374 -6.5038 -3.7972 43 1 5.4144 -9.2824 -1.9442 44 1 7.5386 -11.4313 -3.3574 45 1 2.3991 -9.9758 -0.7510 46 1 1.9972 -8.8660 0.5813 47 1 1.3077 -8.5992 -1.0379 48 1 1.9420 -4.3811 -1.1837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986329424.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:57 Heat of formation + Delta-G solvation = -34.597944 kcal Electronic energy + Delta-G solvation = -28626.955014 eV Core-core repulsion = 24682.145573 eV Total energy + Delta-G solvation = -3944.809440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.11458 -41.07201 -39.32670 -38.59648 -35.97202 -34.38864 -33.67143 -33.50275 -32.46226 -31.49733 -30.33860 -28.15710 -26.99230 -25.67449 -25.41459 -24.57414 -23.50508 -22.22187 -21.64473 -20.63929 -19.56684 -19.16167 -18.59171 -17.74587 -17.54300 -16.79431 -16.53043 -16.19182 -15.89733 -15.64974 -15.45293 -15.40526 -14.98666 -14.78260 -14.58030 -14.49120 -14.17085 -14.06029 -13.72353 -13.57254 -13.32525 -13.25387 -13.16125 -13.07290 -12.87987 -12.85156 -12.60718 -12.48073 -12.19590 -12.10718 -11.92095 -11.77138 -11.69947 -11.53879 -11.21299 -11.07621 -10.87267 -10.61463 -9.79759 -9.58569 -9.01130 -7.92305 -5.22172 -0.34164 0.09127 1.50712 1.53314 1.59075 1.67443 1.81878 1.93924 2.58727 2.67161 3.07879 3.33934 3.43721 3.65612 3.75234 3.78959 3.89325 3.94947 3.98817 4.03619 4.05953 4.18511 4.29100 4.31340 4.38414 4.48508 4.53697 4.62525 4.65479 4.70012 4.72564 4.83753 4.86700 4.90778 4.93174 4.97689 5.06017 5.21379 5.22822 5.24483 5.27740 5.29589 5.34751 5.45711 5.56560 6.14669 6.27714 6.46152 6.61838 7.02837 7.34424 8.06580 8.30020 9.30992 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.002380 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.510365 B =11759.476035 C =12597.703949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.071 3.929 3 C -0.147 4.147 4 O -0.304 6.304 5 C 0.335 3.665 6 C -0.194 4.194 7 C 0.011 3.989 8 C -0.233 4.233 9 C 0.579 3.421 10 O -0.577 6.577 11 N -0.603 5.603 12 C 0.093 3.907 13 C -0.147 4.147 14 C 0.171 3.829 15 H 0.076 0.924 16 N -0.729 5.729 17 C -0.235 4.235 18 H 0.085 0.915 19 C -0.077 4.077 20 N -0.972 5.972 21 Si 0.973 3.027 22 H -0.302 1.302 23 H -0.277 1.277 24 H -0.275 1.275 25 C 0.134 3.866 26 H 0.048 0.952 27 C -0.145 4.145 28 C 0.171 3.829 29 N -0.547 5.547 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.170 0.830 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.424 24.809 6.134 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 C -0.204 4.204 4 O -0.211 6.211 5 C 0.157 3.843 6 C -0.214 4.214 7 C -0.014 4.014 8 C -0.238 4.238 9 C 0.369 3.631 10 O -0.458 6.458 11 N -0.335 5.335 12 C -0.028 4.028 13 C -0.188 4.188 14 C 0.061 3.939 15 H 0.094 0.906 16 N -0.368 5.368 17 C -0.367 4.367 18 H 0.103 0.897 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.802 3.198 22 H -0.229 1.229 23 H -0.204 1.204 24 H -0.201 1.201 25 C 0.030 3.970 26 H 0.066 0.934 27 C -0.203 4.203 28 C 0.014 3.986 29 N -0.270 5.270 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.187 0.813 38 H 0.173 0.827 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.791 25.106 6.042 29.275 hybrid contribution 1.103 -1.581 0.155 1.934 sum -12.688 23.525 6.197 27.438 Atomic orbital electron populations 1.22193 0.93993 1.02266 1.03732 1.22653 0.95162 0.93676 0.86919 1.21925 1.01858 0.92440 1.04161 1.86277 1.79372 1.15460 1.40023 1.20315 0.88953 0.85145 0.89924 1.21219 1.06720 0.93394 1.00094 1.21602 0.90240 0.93530 0.96059 1.20624 1.12044 0.93477 0.97704 1.17928 0.76232 0.87655 0.81299 1.90749 1.53833 1.61255 1.39925 1.48522 1.68193 1.09522 1.07258 1.22924 1.01350 0.95746 0.82799 1.23415 0.98995 0.96225 1.00171 1.21454 0.91499 0.89947 0.90982 0.90645 1.42516 1.29539 1.51834 1.12891 1.19588 1.07928 1.18541 0.90637 0.89748 1.25577 0.98213 1.01785 1.01309 1.69825 1.17291 1.40629 1.34459 0.85218 0.76614 0.78092 0.79863 1.22851 1.20352 1.20116 1.21740 0.97524 0.80876 0.96888 0.93402 1.21941 0.97372 0.99349 1.01606 1.23520 0.89260 0.87280 0.98554 1.67394 1.22904 1.12148 1.24583 0.89158 0.93488 0.91679 0.89714 0.92094 0.88480 0.91289 0.81256 0.82718 0.88709 0.87589 0.92635 0.88756 0.79729 0.94170 0.92188 0.92804 0.91062 0.79050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.53 71.98 0.69 -1.33 16 2 C 0.07 1.01 3.10 30.59 0.09 1.11 16 3 C -0.15 -1.41 9.56 71.98 0.69 -0.72 16 4 O -0.30 -5.61 9.75 -87.97 -0.86 -6.47 16 5 C 0.34 6.76 7.46 84.83 0.63 7.39 16 6 C -0.19 -3.56 10.02 22.43 0.22 -3.34 16 7 C 0.01 0.24 9.71 22.70 0.22 0.46 16 8 C -0.23 -5.61 5.72 -19.99 -0.11 -5.72 16 9 C 0.58 17.63 7.48 86.72 0.65 18.27 16 10 O -0.58 -21.64 15.66 -3.96 -0.06 -21.70 16 11 N -0.60 -17.48 3.08 -790.96 -2.43 -19.92 16 12 C 0.09 2.07 5.02 86.85 0.44 2.51 16 13 C -0.15 -4.33 6.77 31.98 0.22 -4.12 16 14 C 0.17 6.18 3.12 46.18 0.14 6.32 16 15 H 0.08 2.62 7.81 -2.39 -0.02 2.61 16 16 N -0.73 -34.98 5.24 -317.32 -1.66 -36.65 16 17 C -0.24 -12.33 9.97 84.03 0.84 -11.49 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 19 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 20 N -0.97 -58.78 13.06 21.65 0.28 -58.49 16 21 Si 0.97 44.80 29.55 68.60 2.03 46.83 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 C 0.13 4.64 3.24 45.28 0.15 4.78 16 26 H 0.05 1.96 7.70 -2.38 -0.02 1.94 16 27 C -0.14 -4.72 9.10 71.98 0.66 -4.07 16 28 C 0.17 3.46 9.12 85.03 0.78 4.24 16 29 N -0.55 -11.21 8.61 -307.81 -2.65 -13.86 16 30 H 0.09 0.76 8.14 -2.38 -0.02 0.75 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 1.34 6.97 -2.39 -0.02 1.32 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.16 3.14 7.94 -2.91 -0.02 3.11 16 39 H 0.09 1.80 6.15 -2.38 -0.01 1.78 16 40 H 0.11 1.70 7.31 -2.39 -0.02 1.68 16 41 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.37 19.84 7.53 -92.71 -0.70 19.14 16 44 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 45 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.05 1.86 6.82 -2.39 -0.02 1.84 16 47 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 48 H 0.19 3.08 4.53 -2.91 -0.01 3.07 16 Total: -1.00 -68.78 389.07 1.68 -67.10 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.27 Total: 32.66 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.76 Total: 10.50 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -6.46 Total: -128.92 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.92 Total: -28.17 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.78 1.68 -67.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986329424.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.501 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds