Wall clock time and date at job start Tue Mar 31 2020 17:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35915 * 116.99803 * 2 1 4 4 C 1.38745 * 120.47233 * 359.97426 * 3 2 1 5 5 N 1.31814 * 120.68004 * 180.02562 * 4 3 2 6 6 C 1.31879 * 121.77811 * 359.72416 * 5 4 3 7 7 C 1.38210 * 120.89021 * 0.54461 * 6 5 4 8 8 C 1.50698 * 120.39071 * 179.74851 * 7 6 5 9 9 C 1.52996 * 109.47252 * 269.71775 * 8 7 6 10 10 C 1.50698 * 109.47252 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00031 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99863 * 180.02562 * 10 9 8 13 13 C 1.47423 * 125.65136 * 359.94184 * 12 10 9 14 14 C 1.54907 * 104.83389 * 155.92354 * 13 12 10 15 15 C 1.55154 * 101.58028 * 37.00608 * 14 13 12 16 16 H 1.09002 * 110.87205 * 82.93838 * 15 14 13 17 17 N 1.46504 * 110.72115 * 206.13249 * 15 14 13 18 18 C 1.36935 * 120.00499 * 268.52945 * 17 15 14 19 19 H 1.08004 * 119.99410 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00015 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99815 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00199 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.46757 * 90.00309 * 22 20 18 24 24 H 1.48501 * 109.47268 * 210.00118 * 22 20 18 25 25 H 1.48499 * 109.47144 * 330.00324 * 22 20 18 26 26 C 1.47026 * 125.64538 * 179.97438 * 12 10 9 27 27 H 1.09005 * 110.01070 * 61.52249 * 26 12 10 28 28 C 1.52997 * 109.88309 * 300.42781 * 26 12 10 29 29 C 1.38582 * 119.21919 * 359.46744 * 7 6 5 30 30 H 1.09000 * 109.46918 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47018 * 300.00265 * 1 2 3 32 32 H 1.08995 * 109.47198 * 60.00674 * 1 2 3 33 33 H 1.07992 * 119.66380 * 0.04844 * 4 3 2 34 34 H 1.08002 * 119.55936 * 180.26759 * 6 5 4 35 35 H 1.09006 * 109.47336 * 149.71680 * 8 7 6 36 36 H 1.09001 * 109.47052 * 29.72151 * 8 7 6 37 37 H 1.09005 * 109.46604 * 60.00045 * 9 8 7 38 38 H 1.09001 * 109.47399 * 300.00164 * 9 8 7 39 39 H 1.09001 * 110.36690 * 37.08054 * 13 12 10 40 40 H 1.09002 * 110.36498 * 274.76027 * 13 12 10 41 41 H 1.09000 * 111.00056 * 278.93619 * 14 13 12 42 42 H 1.08999 * 111.03738 * 155.09946 * 14 13 12 43 43 H 0.97002 * 119.99396 * 88.52547 * 17 15 14 44 44 H 0.97005 * 120.00598 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.47153 * 302.19087 * 28 26 12 46 46 H 1.09001 * 109.46832 * 182.19278 * 28 26 12 47 47 H 1.09004 * 109.47261 * 62.19259 * 28 26 12 48 48 H 1.08005 * 120.80935 * 180.22785 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8941 3.5575 -0.0010 6 6 3.2079 3.6721 0.0043 7 6 4.0179 2.5523 -0.0005 8 6 5.5180 2.6964 0.0000 9 6 6.0262 2.7443 -1.4423 10 6 7.5264 2.8879 -1.4417 11 8 8.1296 2.9466 -0.3912 12 7 8.1976 2.9520 -2.6087 13 6 7.5931 2.8929 -3.9520 14 6 8.6118 3.6044 -4.8770 15 6 9.9616 3.1467 -4.2641 16 1 10.2433 2.1618 -4.6367 17 7 11.0158 4.1251 -4.5430 18 6 11.7918 3.9949 -5.6638 19 1 11.6268 3.1706 -6.3419 20 6 12.7909 4.9216 -5.9277 21 7 13.5364 4.7967 -7.0052 22 14 13.0766 6.3468 -4.7544 23 1 14.0648 5.9465 -3.7208 24 1 13.5968 7.5141 -5.5107 25 1 11.7954 6.7127 -4.0988 26 6 9.6541 3.0919 -2.7529 27 1 10.1573 2.2359 -2.3032 28 6 10.1220 4.3833 -2.0791 29 6 3.4344 1.2953 0.0001 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 0.2214 2.3268 -0.0002 34 1 3.6570 4.6544 0.0081 35 1 5.9646 1.8456 0.5146 36 1 5.7943 3.6174 0.5134 37 1 5.5796 3.5952 -1.9568 38 1 5.7499 1.8234 -1.9557 39 1 6.6389 3.4197 -3.9622 40 1 7.4585 1.8566 -4.2622 41 1 8.5031 4.6874 -4.8178 42 1 8.5130 3.2596 -5.9063 43 1 11.1641 4.8652 -3.9337 44 1 14.2344 5.4445 -7.1899 45 1 9.6017 5.2330 -2.5212 46 1 11.1961 4.4998 -2.2235 47 1 9.9016 4.3372 -1.0126 48 1 4.0429 0.4030 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986528293.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:07 Heat of formation + Delta-G solvation = -17.758736 kcal Electronic energy + Delta-G solvation = -28077.889101 eV Core-core repulsion = 24133.809863 eV Total energy + Delta-G solvation = -3944.079238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.10612 -40.15737 -38.67991 -37.73990 -34.81545 -34.35763 -32.09022 -31.65043 -30.86845 -30.27243 -29.15471 -27.98054 -25.51940 -25.31644 -23.93332 -23.09024 -22.57663 -21.59856 -19.63392 -18.73307 -18.29470 -17.98893 -17.53402 -17.10171 -16.86502 -16.34617 -16.02556 -15.50333 -15.05074 -14.67001 -14.36988 -14.21258 -14.09658 -13.75184 -13.52617 -13.43111 -13.27323 -12.85995 -12.67559 -12.49485 -12.42491 -12.33222 -12.12297 -12.00525 -11.96031 -11.74018 -11.44050 -11.36295 -11.18008 -10.91125 -10.54479 -10.38911 -10.08983 -9.95144 -9.81642 -9.68081 -9.52322 -9.00933 -8.84724 -8.51669 -7.36481 -5.84284 -3.21158 0.67370 0.89491 2.67148 2.68843 3.03138 3.32787 3.35746 3.38781 3.41602 4.05786 4.20126 4.33302 4.50737 4.52531 4.59643 4.62166 4.64645 4.71105 4.82473 4.90679 4.95733 4.96159 5.07995 5.17531 5.20385 5.31459 5.38515 5.50587 5.51035 5.53963 5.54961 5.65949 5.81215 5.83911 5.89750 5.94266 6.00068 6.10403 6.14991 6.36135 6.46807 6.54512 6.55465 6.73325 6.80970 7.55963 7.65996 7.90729 8.23940 8.34457 9.11775 9.84085 10.02821 11.33517 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.002025 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.851745 B =13824.484082 C =14115.609417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.079 3.921 4 C 0.010 3.990 5 N -0.448 5.448 6 C 0.065 3.935 7 C -0.089 4.089 8 C -0.062 4.062 9 C -0.131 4.131 10 C 0.526 3.474 11 O -0.544 6.544 12 N -0.610 5.610 13 C 0.097 3.903 14 C -0.154 4.154 15 C 0.179 3.821 16 H 0.075 0.925 17 N -0.740 5.740 18 C -0.249 4.249 19 H 0.092 0.908 20 C 0.009 3.991 21 N -0.930 5.930 22 Si 0.878 3.122 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.277 1.277 26 C 0.125 3.875 27 H 0.075 0.925 28 C -0.162 4.162 29 C -0.106 4.106 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.368 0.632 44 H 0.260 0.740 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.625 -7.877 13.639 30.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.031 3.969 4 C -0.148 4.148 5 N -0.156 5.156 6 C -0.092 4.092 7 C -0.091 4.091 8 C -0.100 4.100 9 C -0.171 4.171 10 C 0.315 3.685 11 O -0.422 6.422 12 N -0.344 5.344 13 C -0.026 4.026 14 C -0.195 4.195 15 C 0.067 3.933 16 H 0.093 0.907 17 N -0.384 5.384 18 C -0.379 4.379 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.577 5.577 22 Si 0.708 3.292 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.203 1.203 26 C 0.021 3.979 27 H 0.093 0.907 28 C -0.220 4.220 29 C -0.133 4.133 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.204 0.796 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -26.640 -7.373 14.037 31.001 hybrid contribution 0.427 0.428 0.530 0.804 sum -26.213 -6.946 14.567 30.782 Atomic orbital electron populations 1.23134 0.77879 1.04467 1.01625 1.86094 1.21740 1.26072 1.88507 1.20074 0.93148 0.85751 0.97890 1.22895 1.00512 0.87289 1.04091 1.67550 1.12152 1.26425 1.09466 1.22644 0.88543 0.98853 0.99203 1.20804 0.97414 0.92856 0.97990 1.20310 0.88411 1.05188 0.96104 1.21621 0.92469 1.04617 0.98362 1.20188 0.89380 0.76451 0.82472 1.90688 1.70193 1.50733 1.30587 1.48624 1.08281 1.71715 1.05766 1.22403 0.97311 1.00658 0.82253 1.23522 0.96295 1.00825 0.98863 1.21159 0.88054 0.94394 0.89651 0.90696 1.42969 1.38397 1.29095 1.27979 1.19065 1.09661 1.10086 0.99072 0.89026 1.24652 0.98072 0.98672 0.97353 1.69689 1.23459 1.37825 1.26716 0.86659 0.78028 0.83389 0.81101 1.20836 1.21549 1.20264 1.21872 0.79435 0.98459 0.98160 0.90707 1.22054 1.01884 0.96992 1.01104 1.20873 0.91585 0.98622 1.02177 0.87813 0.92373 0.92304 0.82654 0.82363 0.89541 0.89293 0.88731 0.88841 0.91201 0.91384 0.90821 0.90077 0.79616 0.92937 0.92650 0.91078 0.91589 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.46 10.51 -19.47 -0.20 -2.66 16 3 C 0.08 0.68 6.71 -39.08 -0.26 0.42 16 4 C 0.01 0.09 10.22 -17.37 -0.18 -0.09 16 5 N -0.45 -4.55 10.36 -13.13 -0.14 -4.69 16 6 C 0.07 0.59 10.85 -17.54 -0.19 0.40 16 7 C -0.09 -0.76 5.15 -104.51 -0.54 -1.29 16 8 C -0.06 -0.54 4.66 -27.89 -0.13 -0.67 16 9 C -0.13 -1.19 4.69 -27.89 -0.13 -1.32 16 10 C 0.53 7.02 7.63 -10.99 -0.08 6.94 16 11 O -0.54 -9.02 14.89 5.56 0.08 -8.94 16 12 N -0.61 -8.39 3.08 -163.02 -0.50 -8.89 16 13 C 0.10 1.12 6.69 -2.53 -0.02 1.11 16 14 C -0.15 -2.31 6.77 -24.59 -0.17 -2.47 16 15 C 0.18 3.20 3.49 -66.10 -0.23 2.97 16 16 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 17 N -0.74 -16.61 4.74 -51.65 -0.24 -16.85 16 18 C -0.25 -6.71 10.44 -15.06 -0.16 -6.87 16 19 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 20 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 21 N -0.93 -28.45 13.97 55.49 0.78 -27.68 16 22 Si 0.88 21.63 27.74 -169.99 -4.71 16.91 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 26 C 0.12 2.03 3.48 -66.96 -0.23 1.80 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 C -0.16 -2.78 7.93 37.16 0.29 -2.48 16 29 C -0.11 -0.91 9.81 -39.14 -0.38 -1.30 16 30 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.17 7.68 -51.93 -0.40 -0.22 16 32 H 0.06 0.18 7.68 -51.93 -0.40 -0.22 16 33 H 0.16 0.94 6.32 -52.49 -0.33 0.61 16 34 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 36 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 37 H 0.09 0.76 7.85 -51.93 -0.41 0.35 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.37 8.22 2.92 -40.82 -0.12 8.10 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 46 H 0.07 1.29 6.76 -51.93 -0.35 0.94 16 47 H 0.07 1.13 6.77 -51.93 -0.35 0.78 16 48 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -33.52 386.87 -8.02 -41.54 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.39 Total: 7.04 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.51 Total: -1.62 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.11 Total: -58.11 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.12 Total: -11.60 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.52 -8.02 -41.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986528293.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.782 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds