Wall clock time and date at job start Tue Mar 31 2020 17:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35915 * 116.99803 * 2 1 4 4 C 1.38745 * 120.47233 * 359.97426 * 3 2 1 5 5 N 1.31814 * 120.68004 * 180.02562 * 4 3 2 6 6 C 1.31879 * 121.77811 * 359.72416 * 5 4 3 7 7 C 1.38210 * 120.89021 * 0.54461 * 6 5 4 8 8 C 1.50698 * 120.39071 * 179.74851 * 7 6 5 9 9 C 1.52996 * 109.47252 * 269.71775 * 8 7 6 10 10 C 1.50698 * 109.47252 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00031 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99863 * 180.02562 * 10 9 8 13 13 C 1.47423 * 125.65136 * 359.94184 * 12 10 9 14 14 C 1.54907 * 104.83389 * 155.92354 * 13 12 10 15 15 C 1.55154 * 101.58028 * 37.00608 * 14 13 12 16 16 H 1.09002 * 110.87205 * 82.93838 * 15 14 13 17 17 N 1.46504 * 110.72115 * 206.13249 * 15 14 13 18 18 C 1.36935 * 120.00499 * 268.52945 * 17 15 14 19 19 H 1.08004 * 119.99410 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00015 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99815 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00199 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.46757 * 90.00309 * 22 20 18 24 24 H 1.48501 * 109.47268 * 210.00118 * 22 20 18 25 25 H 1.48499 * 109.47144 * 330.00324 * 22 20 18 26 26 C 1.47026 * 125.64538 * 179.97438 * 12 10 9 27 27 H 1.09005 * 110.01070 * 61.52249 * 26 12 10 28 28 C 1.52997 * 109.88309 * 300.42781 * 26 12 10 29 29 C 1.38582 * 119.21919 * 359.46744 * 7 6 5 30 30 H 1.09000 * 109.46918 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47018 * 300.00265 * 1 2 3 32 32 H 1.08995 * 109.47198 * 60.00674 * 1 2 3 33 33 H 1.07992 * 119.66380 * 0.04844 * 4 3 2 34 34 H 1.08002 * 119.55936 * 180.26759 * 6 5 4 35 35 H 1.09006 * 109.47336 * 149.71680 * 8 7 6 36 36 H 1.09001 * 109.47052 * 29.72151 * 8 7 6 37 37 H 1.09005 * 109.46604 * 60.00045 * 9 8 7 38 38 H 1.09001 * 109.47399 * 300.00164 * 9 8 7 39 39 H 1.09001 * 110.36690 * 37.08054 * 13 12 10 40 40 H 1.09002 * 110.36498 * 274.76027 * 13 12 10 41 41 H 1.09000 * 111.00056 * 278.93619 * 14 13 12 42 42 H 1.08999 * 111.03738 * 155.09946 * 14 13 12 43 43 H 0.97002 * 119.99396 * 88.52547 * 17 15 14 44 44 H 0.97005 * 120.00598 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.47153 * 302.19087 * 28 26 12 46 46 H 1.09001 * 109.46832 * 182.19278 * 28 26 12 47 47 H 1.09004 * 109.47261 * 62.19259 * 28 26 12 48 48 H 1.08005 * 120.80935 * 180.22785 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8941 3.5575 -0.0010 6 6 3.2079 3.6721 0.0043 7 6 4.0179 2.5523 -0.0005 8 6 5.5180 2.6964 0.0000 9 6 6.0262 2.7443 -1.4423 10 6 7.5264 2.8879 -1.4417 11 8 8.1296 2.9466 -0.3912 12 7 8.1976 2.9520 -2.6087 13 6 7.5931 2.8929 -3.9520 14 6 8.6118 3.6044 -4.8770 15 6 9.9616 3.1467 -4.2641 16 1 10.2433 2.1618 -4.6367 17 7 11.0158 4.1251 -4.5430 18 6 11.7918 3.9949 -5.6638 19 1 11.6268 3.1706 -6.3419 20 6 12.7909 4.9216 -5.9277 21 7 13.5364 4.7967 -7.0052 22 14 13.0766 6.3468 -4.7544 23 1 14.0648 5.9465 -3.7208 24 1 13.5968 7.5141 -5.5107 25 1 11.7954 6.7127 -4.0988 26 6 9.6541 3.0919 -2.7529 27 1 10.1573 2.2359 -2.3032 28 6 10.1220 4.3833 -2.0791 29 6 3.4344 1.2953 0.0001 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 0.2214 2.3268 -0.0002 34 1 3.6570 4.6544 0.0081 35 1 5.9646 1.8456 0.5146 36 1 5.7943 3.6174 0.5134 37 1 5.5796 3.5952 -1.9568 38 1 5.7499 1.8234 -1.9557 39 1 6.6389 3.4197 -3.9622 40 1 7.4585 1.8566 -4.2622 41 1 8.5031 4.6874 -4.8178 42 1 8.5130 3.2596 -5.9063 43 1 11.1641 4.8652 -3.9337 44 1 14.2344 5.4445 -7.1899 45 1 9.6017 5.2330 -2.5212 46 1 11.1961 4.4998 -2.2235 47 1 9.9016 4.3372 -1.0126 48 1 4.0429 0.4030 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986528293.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:05 Heat of formation + Delta-G solvation = -39.597050 kcal Electronic energy + Delta-G solvation = -28078.836081 eV Core-core repulsion = 24133.809863 eV Total energy + Delta-G solvation = -3945.026218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.72590 -41.26395 -39.31358 -38.89912 -36.02790 -35.54788 -33.69402 -32.55084 -32.08884 -31.39042 -30.30118 -28.37624 -26.91696 -26.20062 -24.83825 -24.51705 -23.67635 -22.31300 -20.95897 -20.00589 -19.78962 -18.87663 -18.17019 -17.97393 -17.60141 -17.19903 -16.83022 -16.63305 -16.43315 -15.96300 -15.63422 -15.21642 -14.89609 -14.80261 -14.58575 -14.35147 -14.22348 -14.04917 -13.87772 -13.66351 -13.47552 -13.14667 -13.11420 -13.06597 -12.99645 -12.84962 -12.69902 -12.57007 -12.40692 -12.15175 -12.03386 -11.94357 -11.72655 -11.53639 -10.98166 -10.84872 -10.44713 -10.41646 -9.64748 -9.43724 -9.31731 -8.02535 -5.35754 0.05588 0.26950 1.36146 1.38112 1.44634 1.67345 1.96770 2.23052 2.46578 2.74505 3.26389 3.39665 3.55800 3.57028 3.65355 3.75871 3.85686 3.95210 3.98986 4.07042 4.13033 4.15658 4.32540 4.35400 4.36384 4.39131 4.44530 4.49381 4.51510 4.61223 4.63785 4.76387 4.82541 4.83108 4.91037 4.95868 5.03735 5.14034 5.17798 5.25425 5.30496 5.32052 5.47839 5.51907 5.77976 6.21474 6.22770 6.61349 6.93693 7.06560 7.19537 7.82310 8.00309 9.18466 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.002025 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.851745 B =13824.484082 C =14115.609417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.075 3.925 4 C 0.005 3.995 5 N -0.471 5.471 6 C 0.056 3.944 7 C -0.084 4.084 8 C -0.054 4.054 9 C -0.120 4.120 10 C 0.524 3.476 11 O -0.581 6.581 12 N -0.611 5.611 13 C 0.105 3.895 14 C -0.148 4.148 15 C 0.168 3.832 16 H 0.069 0.931 17 N -0.746 5.746 18 C -0.226 4.226 19 H 0.065 0.935 20 C -0.059 4.059 21 N -0.980 5.980 22 Si 0.940 3.060 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.255 1.255 26 C 0.131 3.869 27 H 0.067 0.933 28 C -0.155 4.155 29 C -0.115 4.115 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.369 0.631 44 H 0.257 0.743 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.584 -8.091 14.701 34.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.027 3.973 4 C -0.153 4.153 5 N -0.180 5.180 6 C -0.102 4.102 7 C -0.086 4.086 8 C -0.093 4.093 9 C -0.159 4.159 10 C 0.315 3.685 11 O -0.461 6.461 12 N -0.345 5.345 13 C -0.017 4.017 14 C -0.188 4.188 15 C 0.058 3.942 16 H 0.087 0.913 17 N -0.391 5.391 18 C -0.357 4.357 19 H 0.083 0.917 20 C -0.251 4.251 21 N -0.630 5.630 22 Si 0.768 3.232 23 H -0.207 1.207 24 H -0.222 1.222 25 H -0.179 1.179 26 C 0.026 3.974 27 H 0.085 0.915 28 C -0.214 4.214 29 C -0.141 4.141 30 H 0.139 0.861 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.193 0.807 34 H 0.188 0.812 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.205 0.795 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -29.680 -7.615 15.127 34.172 hybrid contribution 1.241 0.343 0.220 1.307 sum -28.439 -7.272 15.347 33.124 Atomic orbital electron populations 1.23425 0.75988 1.06021 1.02566 1.86079 1.23769 1.25765 1.88356 1.20161 0.93321 0.86135 0.97677 1.23227 1.01575 0.86936 1.03528 1.67575 1.12738 1.27264 1.10426 1.22882 0.88469 0.99615 0.99194 1.20679 0.96967 0.92771 0.98201 1.20198 0.88493 1.04662 0.95914 1.21630 0.88859 1.06462 0.98973 1.20943 0.90922 0.75158 0.81506 1.90678 1.71295 1.52267 1.31870 1.48673 1.06986 1.71826 1.06995 1.22513 0.97229 1.02044 0.79898 1.23352 0.95134 1.00585 0.99744 1.21374 0.88346 0.93163 0.91299 0.91271 1.42963 1.39204 1.30196 1.26693 1.19046 1.09073 1.08291 0.99268 0.91664 1.25373 0.98624 1.01848 0.99245 1.69852 1.24783 1.39232 1.29142 0.85645 0.78697 0.79903 0.78973 1.20667 1.22172 1.17941 1.21583 0.81587 0.97782 0.96457 0.91481 1.21962 1.00952 0.97381 1.01056 1.21075 0.91977 0.98999 1.02050 0.86071 0.91430 0.91335 0.80697 0.81227 0.90202 0.89847 0.86750 0.86737 0.87822 0.89093 0.91798 0.89781 0.79454 0.93397 0.92705 0.92457 0.91736 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.82 113.37 1.11 1.19 16 2 O -0.33 -4.53 10.51 -92.60 -0.97 -5.50 16 3 C 0.07 1.15 6.71 22.60 0.15 1.30 16 4 C 0.01 0.08 10.22 84.82 0.87 0.94 16 5 N -0.47 -8.77 10.36 -195.45 -2.02 -10.79 16 6 C 0.06 0.91 10.85 84.68 0.92 1.83 16 7 C -0.08 -1.26 5.15 -19.79 -0.10 -1.36 16 8 C -0.05 -0.83 4.66 29.85 0.14 -0.69 16 9 C -0.12 -1.76 4.69 29.85 0.14 -1.62 16 10 C 0.52 12.64 7.63 87.66 0.67 13.31 16 11 O -0.58 -18.47 14.89 -3.04 -0.05 -18.51 16 12 N -0.61 -15.18 3.08 -788.06 -2.43 -17.61 16 13 C 0.11 2.03 6.69 86.85 0.58 2.62 16 14 C -0.15 -4.09 6.77 31.98 0.22 -3.87 16 15 C 0.17 5.84 3.49 46.18 0.16 6.00 16 16 H 0.07 2.48 8.09 -2.39 -0.02 2.46 16 17 N -0.75 -33.12 4.74 -317.34 -1.50 -34.62 16 18 C -0.23 -12.31 10.44 84.03 0.88 -11.44 16 19 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 20 C -0.06 -3.41 5.50 84.86 0.47 -2.95 16 21 N -0.98 -61.59 13.97 21.65 0.30 -61.28 16 22 Si 0.94 45.00 27.74 68.60 1.90 46.90 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.25 -11.09 6.52 99.48 0.65 -10.45 16 26 C 0.13 4.10 3.48 45.34 0.16 4.26 16 27 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 28 C -0.16 -5.16 7.93 71.98 0.57 -4.59 16 29 C -0.11 -1.74 9.81 22.56 0.22 -1.52 16 30 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.07 0.26 7.68 -2.39 -0.02 0.24 16 32 H 0.07 0.26 7.68 -2.39 -0.02 0.24 16 33 H 0.18 1.74 6.32 -2.91 -0.02 1.72 16 34 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.08 1.34 8.05 -2.38 -0.02 1.32 16 36 H 0.08 1.38 8.05 -2.39 -0.02 1.36 16 37 H 0.11 1.31 7.85 -2.38 -0.02 1.29 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.40 7.48 -2.39 -0.02 1.39 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.37 16.13 2.92 -92.71 -0.27 15.86 16 44 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 45 H 0.05 1.80 8.04 -2.39 -0.02 1.78 16 46 H 0.06 2.04 6.76 -2.39 -0.02 2.02 16 47 H 0.06 2.16 6.77 -2.38 -0.02 2.14 16 48 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -73.95 386.87 3.01 -70.94 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.63 Total: 27.07 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 7.15 Total: 3.41 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -5.65 Total: -124.31 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -1.02 Total: -24.01 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Total: -73.95 3.01 -70.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986528293.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.344 kcal (2) G-P(sol) polarization free energy of solvation -73.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds