Wall clock time and date at job start Tue Mar 31 2020 17:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35678 * 116.99935 * 2 1 4 4 C 1.38915 * 119.68433 * 179.97438 * 3 2 1 5 5 C 1.38381 * 119.11543 * 180.02562 * 4 3 2 6 6 C 1.38828 * 118.48305 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.35606 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47213 * 90.00126 * 7 6 5 9 9 C 1.50704 * 109.47165 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00162 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99729 * 180.02562 * 9 8 7 12 12 C 1.47419 * 125.65139 * 0.02562 * 11 9 8 13 13 C 1.54905 * 104.92834 * 155.80015 * 12 11 9 14 14 C 1.55448 * 101.45165 * 37.00468 * 13 12 11 15 15 H 1.08998 * 110.85957 * 82.96191 * 14 13 12 16 16 N 1.46505 * 110.70786 * 206.14333 * 14 13 12 17 17 C 1.36933 * 120.00363 * 268.54688 * 16 14 13 18 18 H 1.08005 * 119.99792 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00148 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47414 * 59.99701 * 21 19 17 23 23 H 1.48502 * 109.47061 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47031 * 299.99731 * 21 19 17 25 25 C 1.47026 * 125.64285 * 180.02562 * 11 9 8 26 26 H 1.08998 * 109.88266 * 300.48971 * 25 11 9 27 27 C 1.53003 * 109.88420 * 61.50702 * 25 11 9 28 28 C 1.38053 * 119.28885 * 0.25188 * 6 5 4 29 29 N 1.31970 * 120.83232 * 359.45872 * 28 6 5 30 30 H 1.09007 * 109.47019 * 59.99596 * 1 2 3 31 31 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47466 * 299.99835 * 1 2 3 33 33 H 1.08003 * 120.44547 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.75932 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47132 * 329.99759 * 7 6 5 36 36 H 1.09007 * 109.47292 * 210.00131 * 7 6 5 37 37 H 1.08998 * 109.47591 * 60.00169 * 8 7 6 38 38 H 1.09005 * 109.47141 * 299.99660 * 8 7 6 39 39 H 1.09002 * 110.36926 * 274.69484 * 12 11 9 40 40 H 1.08995 * 110.36556 * 36.90768 * 12 11 9 41 41 H 1.09002 * 111.00852 * 155.13877 * 13 12 11 42 42 H 1.09004 * 111.00578 * 278.99532 * 13 12 11 43 43 H 0.97005 * 119.99214 * 88.55046 * 16 14 13 44 44 H 0.97001 * 120.00150 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.47418 * 58.54356 * 27 25 11 46 46 H 1.08999 * 109.46831 * 178.54506 * 27 25 11 47 47 H 1.09004 * 109.46664 * 298.54364 * 27 25 11 48 48 H 1.07998 * 119.58289 * 179.72269 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4325 1.2740 0.0005 5 6 4.0485 2.5131 0.0011 6 6 3.2505 3.6492 0.0005 7 6 3.8768 5.0198 0.0016 8 6 4.0904 5.4841 -1.4404 9 6 4.7173 6.8546 -1.4393 10 8 4.9681 7.4058 -0.3885 11 7 4.9983 7.4680 -2.6060 12 6 4.7457 6.9162 -3.9495 13 6 4.6375 8.1535 -4.8752 14 6 5.7122 9.0937 -4.2606 15 1 6.7053 8.8444 -4.6342 16 7 5.3931 10.4964 -4.5382 17 6 5.8937 11.1036 -5.6588 18 1 6.5234 10.5484 -6.3383 19 6 5.5918 12.4328 -5.9215 20 7 4.8240 13.1093 -5.0937 21 14 6.2741 13.2609 -7.4506 22 1 5.7985 12.5396 -8.6582 23 1 5.8086 14.6703 -7.4997 24 1 7.7582 13.2316 -7.4089 25 6 5.6075 8.7984 -2.7495 26 1 4.9791 9.5477 -2.2682 27 6 7.0007 8.8037 -2.1172 28 6 1.8770 3.5097 0.0047 29 7 1.3185 2.3140 -0.0014 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.0228 0.3695 0.0005 34 1 5.1254 2.5947 0.0019 35 1 4.8367 4.9802 0.5166 36 1 3.2177 5.7200 0.5150 37 1 3.1305 5.5237 -1.9554 38 1 4.7495 4.7839 -1.9537 39 1 5.5749 6.2809 -4.2608 40 1 3.8128 6.3527 -3.9589 41 1 4.8851 7.8943 -5.9046 42 1 3.6456 8.6015 -4.8145 43 1 4.8273 10.9949 -3.9281 44 1 4.6134 14.0382 -5.2771 45 1 7.6208 8.0472 -2.5978 46 1 7.4562 9.7850 -2.2500 47 1 6.9174 8.5829 -1.0530 48 1 1.2517 4.3902 0.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986552837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:15 Heat of formation + Delta-G solvation = -29.185478 kcal Electronic energy + Delta-G solvation = -27818.661881 eV Core-core repulsion = 23874.087142 eV Total energy + Delta-G solvation = -3944.574738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.99430 -40.00201 -38.43428 -37.48568 -34.39117 -34.13709 -32.55298 -31.71389 -30.93873 -30.00883 -28.93467 -27.58164 -25.23358 -25.04960 -23.77804 -23.05673 -22.52858 -21.53076 -20.08984 -18.73679 -18.71639 -17.47587 -17.29404 -16.96608 -16.33500 -16.11142 -15.35357 -15.22678 -14.85509 -14.83839 -14.61264 -14.14739 -13.80577 -13.63411 -13.44724 -13.39513 -13.26704 -12.93040 -12.77455 -12.41505 -12.26193 -12.07454 -11.88481 -11.87048 -11.62977 -11.41036 -11.26475 -11.17101 -11.04108 -10.85003 -10.60943 -10.28795 -10.20843 -10.06838 -9.93681 -9.79304 -9.56625 -8.96453 -8.68818 -8.40622 -7.05946 -5.83780 -3.14393 0.80644 0.92442 2.75640 2.78541 3.12714 3.39809 3.43806 3.45167 3.45736 3.98636 4.35955 4.52790 4.59351 4.63162 4.69942 4.86497 4.93012 4.95965 4.96462 4.98829 5.03166 5.24474 5.28646 5.30497 5.34364 5.40629 5.47346 5.57996 5.58404 5.65153 5.68616 5.78084 5.88975 5.93798 6.05328 6.07714 6.11305 6.12900 6.27830 6.44204 6.56384 6.59910 6.72656 6.88054 6.89397 7.51207 7.62690 7.76973 8.32432 8.34964 9.44862 9.99293 10.33969 11.38216 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.001890 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.951351 B =14812.969259 C =15242.214971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.312 3.688 4 C -0.188 4.188 5 C -0.037 4.037 6 C -0.168 4.168 7 C -0.055 4.055 8 C -0.131 4.131 9 C 0.525 3.475 10 O -0.545 6.545 11 N -0.610 5.610 12 C 0.098 3.902 13 C -0.157 4.157 14 C 0.176 3.824 15 H 0.067 0.933 16 N -0.714 5.714 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.125 3.875 26 H 0.076 0.924 27 C -0.153 4.153 28 C 0.144 3.856 29 N -0.538 5.538 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 -25.427 9.281 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.133 3.867 4 C -0.208 4.208 5 C -0.062 4.062 6 C -0.170 4.170 7 C -0.094 4.094 8 C -0.171 4.171 9 C 0.313 3.687 10 O -0.423 6.423 11 N -0.343 5.343 12 C -0.025 4.025 13 C -0.198 4.198 14 C 0.064 3.936 15 H 0.085 0.915 16 N -0.354 5.354 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.021 3.979 26 H 0.094 0.906 27 C -0.211 4.211 28 C -0.012 4.012 29 N -0.261 5.261 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.220 0.780 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.158 -25.427 9.748 27.716 hybrid contribution 0.680 0.761 -0.835 1.319 sum -4.479 -24.665 8.912 26.606 Atomic orbital electron populations 1.22853 0.77188 1.02897 1.02535 1.86228 1.22966 1.24668 1.87927 1.19867 0.89473 0.84723 0.92654 1.21068 0.91992 0.99573 1.08176 1.21375 1.00664 0.90697 0.93513 1.20789 0.94746 0.96523 1.04932 1.20190 1.02078 0.91368 0.95715 1.21645 1.02409 0.94350 0.98677 1.20226 0.78647 0.87299 0.82506 1.90687 1.54098 1.66944 1.30568 1.48621 1.60959 1.19114 1.05647 1.22370 1.00249 0.97421 0.82456 1.23623 1.02569 0.95162 0.98452 1.21298 0.96210 0.86544 0.89523 0.91502 1.42342 1.59530 1.05882 1.27618 1.19167 1.25012 0.93813 0.99657 0.91038 1.24769 1.00242 0.96779 0.98832 1.69654 1.40655 1.09844 1.37555 0.86251 0.78526 0.78599 0.82667 1.21206 1.21669 1.21187 1.21955 0.94229 0.83386 0.98311 0.90565 1.22030 0.95801 1.02244 1.01069 1.22371 0.92338 0.93581 0.92901 1.67333 1.40921 0.98806 1.19071 0.92250 0.88677 0.92304 0.84138 0.83985 0.89901 0.89775 0.88962 0.89067 0.91752 0.91391 0.90572 0.90686 0.77987 0.93302 0.93209 0.91203 0.92008 0.82269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.31 -2.97 10.48 -18.74 -0.20 -3.17 16 3 C 0.31 3.14 7.49 -17.12 -0.13 3.01 16 4 C -0.19 -1.57 10.04 -39.28 -0.39 -1.96 16 5 C -0.04 -0.28 9.85 -39.31 -0.39 -0.67 16 6 C -0.17 -1.41 5.15 -104.47 -0.54 -1.95 16 7 C -0.06 -0.50 4.66 -27.89 -0.13 -0.63 16 8 C -0.13 -1.25 4.69 -27.88 -0.13 -1.38 16 9 C 0.52 7.38 7.64 -10.98 -0.08 7.29 16 10 O -0.54 -9.50 15.01 5.56 0.08 -9.41 16 11 N -0.61 -8.88 3.07 -163.02 -0.50 -9.38 16 12 C 0.10 1.21 6.68 -2.53 -0.02 1.19 16 13 C -0.16 -2.46 6.79 -24.43 -0.17 -2.63 16 14 C 0.18 3.29 3.15 -65.94 -0.21 3.08 16 15 H 0.07 1.25 7.80 -51.93 -0.41 0.85 16 16 N -0.71 -17.06 5.22 -51.50 -0.27 -17.33 16 17 C -0.25 -6.51 9.96 -15.06 -0.15 -6.66 16 18 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 21 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.12 2.16 3.21 -66.95 -0.21 1.95 16 26 H 0.08 1.51 7.72 -51.93 -0.40 1.11 16 27 C -0.15 -2.52 9.11 37.16 0.34 -2.19 16 28 C 0.14 1.30 10.85 -17.56 -0.19 1.11 16 29 N -0.54 -5.61 9.22 -13.33 -0.12 -5.73 16 30 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 33 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 36 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 37 H 0.09 0.79 7.84 -51.93 -0.41 0.38 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.69 7.47 -51.93 -0.39 0.30 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.39 9.99 7.56 -40.82 -0.31 9.68 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.06 1.05 6.88 -51.93 -0.36 0.69 16 48 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 396.97 15.07 5.98 5.98 Total: -1.00 -32.19 396.97 -8.49 -40.68 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.72 Total: 7.77 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.45 Total: 0.54 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.17 Total: -59.11 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.11 Total: -12.58 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.19 -8.49 -40.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986552837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.495 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds