Wall clock time and date at job start Tue Mar 31 2020 17:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35678 * 116.99935 * 2 1 4 4 C 1.38915 * 119.68433 * 179.97438 * 3 2 1 5 5 C 1.38381 * 119.11543 * 180.02562 * 4 3 2 6 6 C 1.38828 * 118.48305 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.35606 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47213 * 90.00126 * 7 6 5 9 9 C 1.50704 * 109.47165 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00162 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99729 * 180.02562 * 9 8 7 12 12 C 1.47419 * 125.65139 * 0.02562 * 11 9 8 13 13 C 1.54905 * 104.92834 * 155.80015 * 12 11 9 14 14 C 1.55448 * 101.45165 * 37.00468 * 13 12 11 15 15 H 1.08998 * 110.85957 * 82.96191 * 14 13 12 16 16 N 1.46505 * 110.70786 * 206.14333 * 14 13 12 17 17 C 1.36933 * 120.00363 * 268.54688 * 16 14 13 18 18 H 1.08005 * 119.99792 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00148 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47414 * 59.99701 * 21 19 17 23 23 H 1.48502 * 109.47061 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47031 * 299.99731 * 21 19 17 25 25 C 1.47026 * 125.64285 * 180.02562 * 11 9 8 26 26 H 1.08998 * 109.88266 * 300.48971 * 25 11 9 27 27 C 1.53003 * 109.88420 * 61.50702 * 25 11 9 28 28 C 1.38053 * 119.28885 * 0.25188 * 6 5 4 29 29 N 1.31970 * 120.83232 * 359.45872 * 28 6 5 30 30 H 1.09007 * 109.47019 * 59.99596 * 1 2 3 31 31 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47466 * 299.99835 * 1 2 3 33 33 H 1.08003 * 120.44547 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.75932 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47132 * 329.99759 * 7 6 5 36 36 H 1.09007 * 109.47292 * 210.00131 * 7 6 5 37 37 H 1.08998 * 109.47591 * 60.00169 * 8 7 6 38 38 H 1.09005 * 109.47141 * 299.99660 * 8 7 6 39 39 H 1.09002 * 110.36926 * 274.69484 * 12 11 9 40 40 H 1.08995 * 110.36556 * 36.90768 * 12 11 9 41 41 H 1.09002 * 111.00852 * 155.13877 * 13 12 11 42 42 H 1.09004 * 111.00578 * 278.99532 * 13 12 11 43 43 H 0.97005 * 119.99214 * 88.55046 * 16 14 13 44 44 H 0.97001 * 120.00150 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.47418 * 58.54356 * 27 25 11 46 46 H 1.08999 * 109.46831 * 178.54506 * 27 25 11 47 47 H 1.09004 * 109.46664 * 298.54364 * 27 25 11 48 48 H 1.07998 * 119.58289 * 179.72269 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4325 1.2740 0.0005 5 6 4.0485 2.5131 0.0011 6 6 3.2505 3.6492 0.0005 7 6 3.8768 5.0198 0.0016 8 6 4.0904 5.4841 -1.4404 9 6 4.7173 6.8546 -1.4393 10 8 4.9681 7.4058 -0.3885 11 7 4.9983 7.4680 -2.6060 12 6 4.7457 6.9162 -3.9495 13 6 4.6375 8.1535 -4.8752 14 6 5.7122 9.0937 -4.2606 15 1 6.7053 8.8444 -4.6342 16 7 5.3931 10.4964 -4.5382 17 6 5.8937 11.1036 -5.6588 18 1 6.5234 10.5484 -6.3383 19 6 5.5918 12.4328 -5.9215 20 7 4.8240 13.1093 -5.0937 21 14 6.2741 13.2609 -7.4506 22 1 5.7985 12.5396 -8.6582 23 1 5.8086 14.6703 -7.4997 24 1 7.7582 13.2316 -7.4089 25 6 5.6075 8.7984 -2.7495 26 1 4.9791 9.5477 -2.2682 27 6 7.0007 8.8037 -2.1172 28 6 1.8770 3.5097 0.0047 29 7 1.3185 2.3140 -0.0014 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.0228 0.3695 0.0005 34 1 5.1254 2.5947 0.0019 35 1 4.8367 4.9802 0.5166 36 1 3.2177 5.7200 0.5150 37 1 3.1305 5.5237 -1.9554 38 1 4.7495 4.7839 -1.9537 39 1 5.5749 6.2809 -4.2608 40 1 3.8128 6.3527 -3.9589 41 1 4.8851 7.8943 -5.9046 42 1 3.6456 8.6015 -4.8145 43 1 4.8273 10.9949 -3.9281 44 1 4.6134 14.0382 -5.2771 45 1 7.6208 8.0472 -2.5978 46 1 7.4562 9.7850 -2.2500 47 1 6.9174 8.5829 -1.0530 48 1 1.2517 4.3902 0.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986552837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:14 Heat of formation + Delta-G solvation = -50.704210 kcal Electronic energy + Delta-G solvation = -27819.595003 eV Core-core repulsion = 23874.087142 eV Total energy + Delta-G solvation = -3945.507861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.66046 -41.16233 -39.16792 -38.69314 -35.89008 -35.16904 -33.43793 -33.10220 -32.26232 -31.14838 -30.14775 -28.18817 -26.83054 -25.91219 -24.74830 -24.37985 -23.57516 -22.38567 -21.49303 -19.92039 -19.35618 -19.11742 -18.15188 -18.06157 -17.34163 -16.96413 -16.56434 -16.36211 -16.03566 -15.57953 -15.45398 -15.26634 -15.23193 -14.76568 -14.58820 -14.51177 -14.16893 -13.99539 -13.94157 -13.48916 -13.24941 -13.13833 -13.07269 -12.89576 -12.86867 -12.62769 -12.57099 -12.42419 -12.19142 -12.10703 -12.03348 -11.98092 -11.71198 -11.51911 -10.93298 -10.85213 -10.71627 -10.57644 -9.60898 -9.35006 -9.01530 -7.93322 -5.23180 0.16269 0.30296 1.49696 1.52357 1.58272 1.70336 2.01228 2.18171 2.58251 2.77408 3.35476 3.38270 3.50218 3.77291 3.81009 3.95566 3.97154 4.02675 4.09583 4.20676 4.23229 4.34050 4.35230 4.42334 4.43258 4.45222 4.47452 4.54898 4.65419 4.69956 4.74327 4.76855 4.82070 4.94193 4.97733 5.02658 5.08141 5.21016 5.24937 5.26115 5.38508 5.40922 5.48831 5.52866 5.55462 6.25052 6.26887 6.65817 6.85987 7.22788 7.33278 8.06065 8.29468 9.29897 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.001890 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.951351 B =14812.969259 C =15242.214971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.291 3.709 4 C -0.190 4.190 5 C -0.032 4.032 6 C -0.164 4.164 7 C -0.047 4.047 8 C -0.119 4.119 9 C 0.520 3.480 10 O -0.585 6.585 11 N -0.612 5.612 12 C 0.106 3.894 13 C -0.150 4.150 14 C 0.169 3.831 15 H 0.072 0.928 16 N -0.729 5.729 17 C -0.238 4.238 18 H 0.083 0.917 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.974 3.026 22 H -0.275 1.275 23 H -0.301 1.301 24 H -0.278 1.278 25 C 0.131 3.869 26 H 0.041 0.959 27 C -0.143 4.143 28 C 0.133 3.867 29 N -0.558 5.558 30 H 0.054 0.946 31 H 0.121 0.879 32 H 0.053 0.947 33 H 0.158 0.842 34 H 0.167 0.833 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.370 0.630 44 H 0.250 0.750 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 -28.392 8.204 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.113 3.887 4 C -0.210 4.210 5 C -0.058 4.058 6 C -0.167 4.167 7 C -0.086 4.086 8 C -0.158 4.158 9 C 0.311 3.689 10 O -0.466 6.466 11 N -0.345 5.345 12 C -0.016 4.016 13 C -0.191 4.191 14 C 0.059 3.941 15 H 0.089 0.911 16 N -0.368 5.368 17 C -0.369 4.369 18 H 0.101 0.899 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.803 3.197 22 H -0.201 1.201 23 H -0.227 1.227 24 H -0.204 1.204 25 C 0.026 3.974 26 H 0.059 0.941 27 C -0.201 4.201 28 C -0.023 4.023 29 N -0.281 5.281 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.072 0.928 33 H 0.176 0.824 34 H 0.185 0.815 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.202 0.798 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.359 -28.475 8.650 30.077 hybrid contribution 0.427 1.602 -0.430 1.713 sum -3.932 -26.873 8.220 28.376 Atomic orbital electron populations 1.23002 0.76147 1.04466 1.02040 1.86211 1.24116 1.24724 1.87999 1.20218 0.90350 0.84800 0.93324 1.21335 0.91501 1.00636 1.07569 1.21668 1.01850 0.89997 0.92243 1.20701 0.94485 0.96373 1.05115 1.20070 1.01701 0.91417 0.95379 1.21663 1.03221 0.91499 0.99445 1.21089 0.77770 0.88544 0.81490 1.90676 1.55632 1.68259 1.31986 1.48695 1.60837 1.17934 1.07053 1.22501 1.03164 0.95975 0.79927 1.23435 0.99991 0.95797 0.99835 1.21512 0.97339 0.84495 0.90728 0.91054 1.42520 1.59406 1.08023 1.26843 1.19599 1.23539 0.93890 0.99916 0.89891 1.25581 1.01522 0.97805 1.01952 1.69827 1.42984 1.09669 1.39676 0.85209 0.78027 0.76919 0.79573 1.20118 1.22725 1.20384 1.21617 0.94234 0.84547 0.96999 0.94109 1.21917 0.95558 1.01952 1.00685 1.22615 0.93018 0.93609 0.93010 1.67320 1.41641 0.99319 1.19855 0.92715 0.86125 0.92792 0.82439 0.81512 0.90191 0.90903 0.87291 0.86367 0.88789 0.88177 0.89390 0.92746 0.79785 0.94147 0.91207 0.92782 0.92783 0.81276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 113.37 1.18 1.67 16 2 O -0.32 -5.84 10.48 -89.96 -0.94 -6.78 16 3 C 0.29 5.50 7.49 84.79 0.63 6.13 16 4 C -0.19 -2.74 10.04 22.47 0.23 -2.52 16 5 C -0.03 -0.40 9.85 22.45 0.22 -0.18 16 6 C -0.16 -2.37 5.15 -19.77 -0.10 -2.48 16 7 C -0.05 -0.74 4.66 29.84 0.14 -0.60 16 8 C -0.12 -1.86 4.69 29.85 0.14 -1.72 16 9 C 0.52 13.61 7.64 87.66 0.67 14.28 16 10 O -0.58 -20.14 15.01 -3.03 -0.05 -20.19 16 11 N -0.61 -16.57 3.07 -788.06 -2.42 -18.99 16 12 C 0.11 2.20 6.68 86.85 0.58 2.78 16 13 C -0.15 -4.40 6.79 32.09 0.22 -4.18 16 14 C 0.17 6.19 3.15 46.28 0.15 6.34 16 15 H 0.07 2.56 7.80 -2.39 -0.02 2.54 16 16 N -0.73 -35.44 5.22 -316.84 -1.66 -37.10 16 17 C -0.24 -12.61 9.96 84.03 0.84 -11.77 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 19 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 20 N -0.97 -58.99 13.06 21.65 0.28 -58.71 16 21 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 C 0.13 4.52 3.21 45.34 0.15 4.67 16 26 H 0.04 1.69 7.72 -2.39 -0.02 1.68 16 27 C -0.14 -4.67 9.11 71.98 0.66 -4.02 16 28 C 0.13 2.20 10.85 84.63 0.92 3.12 16 29 N -0.56 -11.04 9.22 -308.95 -2.85 -13.89 16 30 H 0.05 0.74 8.10 -2.38 -0.02 0.72 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 33 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.08 1.33 8.05 -2.39 -0.02 1.31 16 36 H 0.07 1.32 8.05 -2.38 -0.02 1.30 16 37 H 0.11 1.42 7.84 -2.39 -0.02 1.40 16 38 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.52 7.47 -2.39 -0.02 1.50 16 41 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.37 20.03 7.56 -92.70 -0.70 19.33 16 44 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.05 1.84 6.88 -2.38 -0.02 1.82 16 48 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -72.17 396.97 1.73 -70.44 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.25 Total: 30.46 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 7.07 Total: 7.70 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -6.64 Total: -128.68 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.99 Total: -26.97 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -72.17 1.73 -70.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986552837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.737 kcal (2) G-P(sol) polarization free energy of solvation -72.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds