Wall clock time and date at job start Tue Mar 31 2020 17:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35680 * 116.99765 * 2 1 4 4 C 1.38916 * 119.67946 * 180.02562 * 3 2 1 5 5 C 1.38385 * 119.11061 * 180.02562 * 4 3 2 6 6 C 1.38828 * 118.48123 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.35114 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47261 * 90.00071 * 7 6 5 9 9 C 1.50699 * 109.47265 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00208 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99669 * 180.02562 * 9 8 7 12 12 C 1.47427 * 125.65315 * 0.02618 * 11 9 8 13 13 C 1.54911 * 104.83590 * 204.09533 * 12 11 9 14 14 C 1.55162 * 101.58020 * 322.98990 * 13 12 11 15 15 H 1.09004 * 110.72118 * 276.96351 * 14 13 12 16 16 N 1.46490 * 110.72340 * 153.86420 * 14 13 12 17 17 C 1.36942 * 120.00030 * 86.45395 * 16 14 13 18 18 H 1.07998 * 119.99988 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99985 * 180.02562 * 17 16 14 20 20 N 1.31611 * 120.00265 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99565 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47257 * 89.99987 * 21 19 17 23 23 H 1.48506 * 109.46706 * 209.99655 * 21 19 17 24 24 H 1.48500 * 109.47121 * 329.99247 * 21 19 17 25 25 C 1.47028 * 125.64738 * 179.72258 * 11 9 8 26 26 H 1.09003 * 109.88339 * 59.55549 * 25 11 9 27 27 C 1.53004 * 109.87848 * 298.39090 * 25 11 9 28 28 C 1.38041 * 119.29330 * 0.02562 * 6 5 4 29 29 N 1.31969 * 120.83481 * 359.97295 * 28 6 5 30 30 H 1.09000 * 109.47436 * 300.00057 * 1 2 3 31 31 H 1.09003 * 109.47408 * 59.99506 * 1 2 3 32 32 H 1.09004 * 109.47247 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.45027 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.75612 * 179.72723 * 5 4 3 35 35 H 1.09000 * 109.47478 * 209.99844 * 7 6 5 36 36 H 1.08995 * 109.47497 * 330.00076 * 7 6 5 37 37 H 1.09005 * 109.47127 * 300.00412 * 8 7 6 38 38 H 1.09003 * 109.46717 * 59.99901 * 8 7 6 39 39 H 1.09002 * 110.36474 * 322.92905 * 12 11 9 40 40 H 1.08996 * 110.36636 * 85.25116 * 12 11 9 41 41 H 1.09004 * 111.00546 * 81.06061 * 13 12 11 42 42 H 1.08996 * 111.00638 * 204.91509 * 13 12 11 43 43 H 0.97001 * 120.00502 * 266.45513 * 16 14 13 44 44 H 0.96993 * 120.00271 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.47132 * 61.45330 * 27 25 11 46 46 H 1.09005 * 109.47033 * 181.45364 * 27 25 11 47 47 H 1.08998 * 109.47319 * 301.45544 * 27 25 11 48 48 H 1.07996 * 119.58447 * 179.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4325 1.2739 -0.0005 5 6 4.0485 2.5132 0.0000 6 6 3.2504 3.6491 0.0005 7 6 3.8768 5.0198 0.0017 8 6 4.0892 5.4847 -1.4404 9 6 4.7150 6.8556 -1.4392 10 8 4.9668 7.4064 -0.3884 11 7 4.9949 7.4696 -2.6059 12 6 4.7420 6.9179 -3.9495 13 6 5.7476 7.6487 -4.8739 14 6 5.7555 9.0740 -4.2606 15 1 4.9168 9.6602 -4.6363 16 7 7.0244 9.7509 -4.5388 17 6 7.1893 10.4427 -5.7091 18 1 6.3839 10.4888 -6.4272 19 6 8.3919 11.0838 -5.9729 20 7 9.3740 11.0264 -5.0986 21 14 8.6164 12.0280 -7.5691 22 1 8.1933 13.4379 -7.3739 23 1 10.0461 11.9911 -7.9691 24 1 7.7885 11.4054 -8.6331 25 6 5.5972 8.8031 -2.7495 26 1 6.5744 8.8225 -2.2669 27 6 4.6827 9.8573 -2.1221 28 6 1.8771 3.5097 0.0010 29 7 1.3185 2.3140 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 4.0229 0.3695 -0.0005 34 1 5.1254 2.5946 0.0040 35 1 3.2181 5.7198 0.5158 36 1 4.8370 4.9800 0.5158 37 1 4.7478 4.7847 -1.9546 38 1 3.1289 5.5245 -1.9545 39 1 4.9286 5.8441 -3.9599 40 1 3.7188 7.1291 -4.2598 41 1 6.7357 7.1924 -4.8146 42 1 5.3892 7.6682 -5.9031 43 1 7.7480 9.7093 -3.8941 44 1 10.2142 11.4746 -5.2828 45 1 4.5672 9.6511 -1.0581 46 1 5.1230 10.8456 -2.2550 47 1 3.7067 9.8262 -2.6063 48 1 1.2517 4.3902 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986552839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:20 Heat of formation + Delta-G solvation = -50.620572 kcal Electronic energy + Delta-G solvation = -27820.406931 eV Core-core repulsion = 23874.902698 eV Total energy + Delta-G solvation = -3945.504234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66149 -41.16995 -39.17262 -38.70078 -35.89084 -35.16769 -33.44128 -33.10610 -32.27113 -31.14607 -30.14840 -28.18390 -26.83583 -25.91268 -24.76079 -24.38282 -23.58499 -22.38525 -21.47510 -19.94177 -19.35799 -19.09223 -18.11908 -18.09695 -17.33846 -16.96022 -16.58708 -16.40125 -15.94167 -15.61254 -15.45743 -15.27224 -15.22233 -14.82865 -14.60115 -14.52225 -14.04890 -14.02248 -13.95880 -13.55836 -13.25252 -13.15410 -13.07165 -12.91639 -12.85807 -12.62569 -12.56484 -12.44748 -12.16361 -12.07479 -12.03770 -11.96790 -11.70240 -11.51187 -10.93765 -10.86067 -10.72322 -10.58047 -9.61372 -9.34828 -9.01480 -7.93424 -5.23207 0.16397 0.29509 1.49763 1.51133 1.59288 1.70184 2.00699 2.18141 2.58087 2.77410 3.35761 3.38580 3.49414 3.77060 3.80287 3.93717 3.98789 4.02672 4.08934 4.20417 4.23283 4.30775 4.38903 4.40290 4.44057 4.45021 4.47860 4.54923 4.65207 4.69668 4.74263 4.77149 4.81741 4.94145 4.98128 5.02360 5.07525 5.20855 5.24699 5.25898 5.38301 5.41137 5.49167 5.52496 5.56128 6.25349 6.27049 6.65359 6.85724 7.22516 7.33446 8.06204 8.29528 9.30056 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027005 B = 0.001878 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.592537 B =14908.195585 C =15238.276103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.293 3.707 4 C -0.192 4.192 5 C -0.035 4.035 6 C -0.165 4.165 7 C -0.047 4.047 8 C -0.119 4.119 9 C 0.520 3.480 10 O -0.585 6.585 11 N -0.612 5.612 12 C 0.106 3.894 13 C -0.149 4.149 14 C 0.169 3.831 15 H 0.068 0.932 16 N -0.730 5.730 17 C -0.236 4.236 18 H 0.083 0.917 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.973 3.027 22 H -0.290 1.290 23 H -0.300 1.300 24 H -0.265 1.265 25 C 0.133 3.867 26 H 0.042 0.958 27 C -0.143 4.143 28 C 0.136 3.864 29 N -0.556 5.556 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.370 0.630 44 H 0.250 0.750 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.413 -21.722 8.280 29.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.114 3.886 4 C -0.212 4.212 5 C -0.060 4.060 6 C -0.167 4.167 7 C -0.086 4.086 8 C -0.158 4.158 9 C 0.311 3.689 10 O -0.465 6.465 11 N -0.345 5.345 12 C -0.016 4.016 13 C -0.190 4.190 14 C 0.059 3.941 15 H 0.086 0.914 16 N -0.369 5.369 17 C -0.367 4.367 18 H 0.101 0.899 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.802 3.198 22 H -0.217 1.217 23 H -0.227 1.227 24 H -0.190 1.190 25 C 0.028 3.972 26 H 0.060 0.940 27 C -0.202 4.202 28 C -0.019 4.019 29 N -0.279 5.279 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.173 0.827 34 H 0.180 0.820 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -19.168 -21.764 8.718 30.284 hybrid contribution 1.608 1.070 -0.447 1.983 sum -17.560 -20.695 8.271 28.373 Atomic orbital electron populations 1.23010 0.76075 1.04469 1.02111 1.86215 1.24193 1.24727 1.87979 1.20183 0.90238 0.84865 0.93284 1.21315 0.91645 1.00528 1.07709 1.21657 1.01748 0.90238 0.92406 1.20702 0.94614 0.96244 1.05151 1.20069 1.01588 0.91529 0.95374 1.21666 1.03376 0.91346 0.99453 1.21083 0.77842 0.88463 0.81476 1.90677 1.55540 1.68340 1.31974 1.48697 1.61200 1.17556 1.07069 1.22514 0.99786 0.99362 0.79900 1.23379 0.98921 0.96863 0.99809 1.21450 0.89021 0.92792 0.90839 0.91437 1.42520 1.12321 1.61112 1.20966 1.19617 0.98052 1.23112 0.95967 0.89903 1.25573 0.96510 1.03044 1.01722 1.69827 1.04994 1.49755 1.37579 0.85147 0.76391 0.78480 0.79766 1.21696 1.22667 1.18973 1.21564 0.95623 0.83268 0.96762 0.93968 1.21926 0.99554 0.97957 1.00733 1.22645 0.92834 0.93694 0.92762 1.67332 1.41505 0.99279 1.19832 0.92710 0.92602 0.86190 0.82668 0.81983 0.90353 0.90728 0.87055 0.86586 0.88045 0.88900 0.92673 0.89487 0.79775 0.94157 0.92740 0.92702 0.91236 0.80782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 113.37 1.18 1.65 16 2 O -0.32 -5.84 10.48 -89.97 -0.94 -6.78 16 3 C 0.29 5.51 7.49 84.79 0.63 6.14 16 4 C -0.19 -2.90 10.04 22.47 0.23 -2.67 16 5 C -0.04 -0.47 9.85 22.45 0.22 -0.25 16 6 C -0.16 -2.38 5.15 -19.77 -0.10 -2.48 16 7 C -0.05 -0.74 4.66 29.85 0.14 -0.60 16 8 C -0.12 -1.85 4.69 29.85 0.14 -1.71 16 9 C 0.52 13.57 7.64 87.66 0.67 14.24 16 10 O -0.58 -20.06 15.03 -3.03 -0.05 -20.11 16 11 N -0.61 -16.54 3.06 -788.01 -2.41 -18.96 16 12 C 0.11 2.21 6.69 86.86 0.58 2.79 16 13 C -0.15 -4.39 6.77 31.99 0.22 -4.17 16 14 C 0.17 6.18 3.12 46.19 0.14 6.32 16 15 H 0.07 2.43 7.83 -2.38 -0.02 2.41 16 16 N -0.73 -35.45 5.25 -317.31 -1.67 -37.11 16 17 C -0.24 -12.49 9.98 84.03 0.84 -11.65 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 19 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 20 N -0.97 -58.90 13.06 21.65 0.28 -58.61 16 21 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 C 0.13 4.56 3.21 45.35 0.15 4.71 16 26 H 0.04 1.74 7.69 -2.39 -0.02 1.72 16 27 C -0.14 -4.67 9.11 71.98 0.66 -4.02 16 28 C 0.14 2.13 10.85 84.63 0.92 3.04 16 29 N -0.56 -10.60 9.22 -308.96 -2.85 -13.45 16 30 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 32 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.08 1.33 8.05 -2.39 -0.02 1.31 16 36 H 0.07 1.32 8.05 -2.39 -0.02 1.30 16 37 H 0.11 1.38 7.85 -2.38 -0.02 1.36 16 38 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.52 7.48 -2.39 -0.02 1.51 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.37 19.99 7.51 -92.71 -0.70 19.30 16 44 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.05 1.85 6.89 -2.39 -0.02 1.83 16 46 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -71.91 396.95 1.72 -70.18 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.26 Total: 30.29 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 7.07 Total: 7.54 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -6.65 Total: -128.14 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.99 Total: -26.89 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -71.91 1.72 -70.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986552839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.563 kcal (2) G-P(sol) polarization free energy of solvation -71.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds