Wall clock time and date at job start Tue Mar 31 2020 17:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47166 * 2 1 4 4 O 1.42898 * 109.47001 * 119.99466 * 2 1 3 5 5 C 1.35926 * 116.99676 * 85.49743 * 4 2 1 6 6 C 1.38851 * 120.40580 * 175.87309 * 5 4 2 7 7 N 1.31882 * 120.99968 * 179.97438 * 6 5 4 8 8 C 1.31680 * 121.94243 * 0.02562 * 7 6 5 9 9 C 1.39522 * 120.69169 * 359.97438 * 8 7 6 10 10 C 1.47854 * 120.53270 * 179.97438 * 9 8 7 11 11 O 1.21546 * 120.00119 * 173.69494 * 10 9 8 12 12 N 1.34781 * 119.99887 * 353.69242 * 10 9 8 13 13 C 1.47420 * 125.64858 * 180.16671 * 12 10 9 14 14 C 1.54906 * 104.83220 * 204.09479 * 13 12 10 15 15 C 1.55157 * 101.58226 * 322.99104 * 14 13 12 16 16 H 1.08999 * 110.72083 * 153.86831 * 15 14 13 17 17 N 1.46507 * 110.72019 * 276.96244 * 15 14 13 18 18 C 1.36930 * 120.00139 * 208.46983 * 17 15 14 19 19 H 1.08001 * 120.00110 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00206 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99769 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00196 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47420 * 90.00030 * 22 20 18 24 24 H 1.48501 * 109.47106 * 210.00177 * 22 20 18 25 25 H 1.48497 * 109.47050 * 329.99633 * 22 20 18 26 26 C 1.47017 * 125.64822 * 359.86439 * 12 10 9 27 27 H 1.09000 * 109.88852 * 59.55577 * 26 12 10 28 28 C 1.53009 * 109.87924 * 298.39225 * 26 12 10 29 29 C 1.38845 * 120.40470 * 355.85609 * 5 4 2 30 30 H 1.09002 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47687 * 300.00234 * 1 2 3 32 32 H 1.09005 * 109.47241 * 59.99949 * 1 2 3 33 33 H 1.08992 * 109.47082 * 239.99930 * 2 1 3 34 34 H 1.08998 * 109.47591 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47082 * 300.00148 * 3 2 1 36 36 H 1.08994 * 109.47427 * 59.99516 * 3 2 1 37 37 H 1.07997 * 119.49929 * 359.70407 * 6 5 4 38 38 H 1.07997 * 119.65424 * 179.97438 * 8 7 6 39 39 H 1.09007 * 110.36943 * 322.93062 * 13 12 10 40 40 H 1.08998 * 110.37027 * 85.25485 * 13 12 10 41 41 H 1.09003 * 111.00556 * 81.06581 * 14 13 12 42 42 H 1.09001 * 111.00613 * 204.91445 * 14 13 12 43 43 H 0.97006 * 119.99469 * 28.46903 * 17 15 14 44 44 H 0.97003 * 119.99876 * 180.02562 * 21 20 18 45 45 H 1.08993 * 109.47294 * 53.33470 * 28 26 12 46 46 H 1.08995 * 109.46785 * 173.34296 * 28 26 12 47 47 H 1.09008 * 109.46747 * 293.33744 * 28 26 12 48 48 H 1.07996 * 120.87934 * 359.97438 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.1223 -2.0259 1.0945 6 6 2.6582 -2.7430 2.1559 7 7 2.7757 -4.0553 2.0984 8 6 2.3950 -4.7433 1.0422 9 6 1.8463 -4.0994 -0.0673 10 6 1.4205 -4.8753 -1.2517 11 8 0.8399 -4.3214 -2.1646 12 7 1.6763 -6.1969 -1.3190 13 6 1.3128 -7.0865 -2.4370 14 6 1.2392 -8.5012 -1.8103 15 6 2.4053 -8.4501 -0.7880 16 1 2.2279 -9.1431 0.0343 17 7 3.6825 -8.7427 -1.4435 18 6 4.7026 -9.3143 -0.7311 19 1 4.5656 -9.5499 0.3140 20 6 5.9125 -9.5920 -1.3522 21 7 6.0793 -9.3054 -2.6260 22 14 7.3039 -10.3725 -0.3805 23 1 7.2021 -11.8511 -0.4708 24 1 8.6067 -9.9309 -0.9398 25 1 7.2090 -9.9556 1.0416 26 6 2.3694 -6.9889 -0.2926 27 1 1.8249 -6.9323 0.6499 28 6 3.7948 -6.4649 -0.1056 29 6 1.7061 -2.7071 -0.0415 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 2.9877 -2.2178 3.0401 38 1 2.5086 -5.8173 1.0346 39 1 0.3438 -6.8028 -2.8480 40 1 2.0786 -7.0543 -3.2119 41 1 0.2849 -8.6564 -1.3069 42 1 1.4122 -9.2711 -2.5622 43 1 3.8053 -8.5314 -2.3823 44 1 6.9247 -9.4998 -3.0602 45 1 3.7650 -5.3934 0.0918 46 1 4.2625 -6.9765 0.7356 47 1 4.3722 -6.6516 -1.0111 48 1 1.2848 -2.1767 -0.8826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986664598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:12 Heat of formation + Delta-G solvation = 26.005913 kcal Electronic energy + Delta-G solvation = -29669.359613 eV Core-core repulsion = 25727.178153 eV Total energy + Delta-G solvation = -3942.181460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29713 -39.96070 -38.41267 -37.64329 -34.12841 -33.68884 -32.78575 -31.86673 -31.41765 -29.43699 -28.92802 -27.63727 -25.74769 -24.76581 -23.72631 -23.50838 -22.18680 -21.33105 -20.10620 -19.56305 -18.21142 -17.50110 -17.17086 -16.91387 -16.16652 -15.84697 -15.69631 -15.00564 -14.83425 -14.66087 -14.25071 -14.07646 -13.69193 -13.59839 -13.55472 -13.14918 -13.04635 -12.91242 -12.63198 -12.58366 -12.36979 -12.22858 -11.99826 -11.45776 -11.33779 -11.26512 -11.07514 -10.98141 -10.84053 -10.66463 -10.56479 -10.39747 -10.23893 -10.11007 -9.79100 -9.74431 -9.42481 -9.02044 -8.42476 -8.31097 -7.12459 -5.89185 -3.20121 0.62714 1.17526 2.84299 2.94672 3.14353 3.37223 3.43559 3.44845 3.83230 4.29878 4.40773 4.48235 4.53311 4.57294 4.64109 4.71831 4.85395 4.92230 5.05070 5.06178 5.20062 5.27640 5.30784 5.37427 5.42920 5.44255 5.52598 5.54827 5.62724 5.69451 5.71980 5.81726 5.87714 5.92149 5.99443 6.04475 6.19118 6.28064 6.30363 6.46452 6.50850 6.61184 6.64791 7.06246 7.19296 7.59463 7.73369 7.85213 8.26378 8.28517 9.40041 9.92126 10.27209 11.32315 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.003131 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.258198 B = 8941.529164 C = 9813.056296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 C -0.147 4.147 4 O -0.304 6.304 5 C 0.061 3.939 6 C 0.095 3.905 7 N -0.456 5.456 8 C 0.072 3.928 9 C -0.150 4.150 10 C 0.575 3.425 11 O -0.551 6.551 12 N -0.593 5.593 13 C 0.111 3.889 14 C -0.145 4.145 15 C 0.174 3.826 16 H 0.079 0.921 17 N -0.707 5.707 18 C -0.246 4.246 19 H 0.074 0.926 20 C -0.007 4.007 21 N -0.928 5.928 22 Si 0.905 3.095 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.081 3.919 27 H 0.076 0.924 28 C -0.166 4.166 29 C -0.109 4.109 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.164 0.836 38 H 0.210 0.790 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.294 15.015 5.919 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.016 3.984 3 C -0.204 4.204 4 O -0.217 6.217 5 C 0.013 3.987 6 C -0.064 4.064 7 N -0.165 5.165 8 C -0.084 4.084 9 C -0.155 4.155 10 C 0.364 3.636 11 O -0.430 6.430 12 N -0.325 5.325 13 C -0.011 4.011 14 C -0.185 4.185 15 C 0.061 3.939 16 H 0.097 0.903 17 N -0.346 5.346 18 C -0.376 4.376 19 H 0.091 0.909 20 C -0.203 4.203 21 N -0.575 5.575 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.025 4.025 27 H 0.093 0.907 28 C -0.224 4.224 29 C -0.136 4.136 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.181 0.819 38 H 0.225 0.775 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.221 0.779 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.068 14.972 6.399 19.688 hybrid contribution 0.532 0.197 -0.801 0.981 sum -10.536 15.169 5.598 19.299 Atomic orbital electron populations 1.22373 0.94817 1.03308 1.03226 1.22511 0.94570 0.93854 0.87445 1.21844 1.02216 0.93238 1.03112 1.86132 1.81376 1.15408 1.38799 1.19979 0.99096 0.84000 0.95594 1.22480 0.96935 0.89748 0.97217 1.67965 1.15871 1.06643 1.25982 1.25163 0.91697 1.04193 0.87357 1.20791 1.03894 0.93975 0.96878 1.17617 0.79303 0.80779 0.85928 1.90727 1.43356 1.69451 1.39505 1.48429 1.56056 1.06657 1.21373 1.22219 1.00557 0.88968 0.89326 1.23178 0.99250 0.95798 1.00229 1.21213 0.87091 0.90785 0.94830 0.90269 1.42397 1.08930 1.72249 1.11044 1.19188 0.91551 1.32909 0.93992 0.90855 1.24748 0.98086 1.01552 0.95950 1.69658 1.25394 1.52777 1.09658 0.86224 0.81980 0.79042 0.79132 1.21675 1.21827 1.20561 1.23203 0.93138 0.95969 0.90207 0.90661 1.22659 0.95463 0.98475 1.05772 1.21800 0.99817 0.93851 0.98174 0.91807 0.91341 0.90771 0.90700 0.91534 0.90395 0.91394 0.81876 0.77454 0.90979 0.91011 0.90872 0.89211 0.77916 0.93343 0.93275 0.90623 0.89065 0.83287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.22 37.16 0.34 -1.15 16 2 C 0.07 0.67 2.85 -26.73 -0.08 0.59 16 3 C -0.15 -1.02 9.56 37.16 0.36 -0.67 16 4 O -0.30 -3.49 9.81 -19.51 -0.19 -3.68 16 5 C 0.06 0.78 6.62 -39.13 -0.26 0.53 16 6 C 0.09 1.23 11.13 -17.30 -0.19 1.04 16 7 N -0.46 -6.72 10.34 -13.29 -0.14 -6.86 16 8 C 0.07 1.08 7.36 -17.14 -0.13 0.95 16 9 C -0.15 -2.35 5.43 -104.84 -0.57 -2.92 16 10 C 0.58 9.99 7.66 -12.32 -0.09 9.90 16 11 O -0.55 -10.76 16.69 5.33 0.09 -10.67 16 12 N -0.59 -9.69 3.06 -166.20 -0.51 -10.20 16 13 C 0.11 1.73 6.85 -2.53 -0.02 1.71 16 14 C -0.15 -2.08 6.69 -24.58 -0.16 -2.24 16 15 C 0.17 2.93 3.53 -66.09 -0.23 2.70 16 16 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 17 N -0.71 -15.30 3.65 -51.65 -0.19 -15.49 16 18 C -0.25 -6.02 8.72 -15.06 -0.13 -6.15 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.93 -26.20 13.06 55.49 0.72 -25.47 16 22 Si 0.91 21.13 29.55 -169.99 -5.02 16.11 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.08 1.28 2.69 -66.95 -0.18 1.10 16 27 H 0.08 1.05 6.27 -51.93 -0.33 0.73 16 28 C -0.17 -2.95 6.84 37.16 0.25 -2.69 16 29 C -0.11 -1.54 7.92 -38.71 -0.31 -1.85 16 30 H 0.06 0.62 7.09 -51.93 -0.37 0.25 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.73 6.24 -51.93 -0.32 0.40 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.21 3.08 2.09 -55.31 -0.12 2.96 16 39 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.39 9.19 7.85 -40.82 -0.32 8.87 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.05 0.84 4.15 -53.05 -0.22 0.62 16 46 H 0.07 1.36 7.95 -51.93 -0.41 0.95 16 47 H 0.09 1.96 6.80 -51.92 -0.35 1.61 16 48 H 0.15 2.01 5.34 -52.49 -0.28 1.73 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -29.61 375.27 -7.98 -37.59 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -6.91 Total: 12.44 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.49 Total: 0.57 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.11 Total: -58.02 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.10 Total: -14.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.61 -7.98 -37.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986664598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.598 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds