Wall clock time and date at job start Tue Mar 31 2020 17:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47166 * 2 1 4 4 O 1.42898 * 109.47001 * 119.99466 * 2 1 3 5 5 C 1.35926 * 116.99676 * 85.49743 * 4 2 1 6 6 C 1.38851 * 120.40580 * 175.87309 * 5 4 2 7 7 N 1.31882 * 120.99968 * 179.97438 * 6 5 4 8 8 C 1.31680 * 121.94243 * 0.02562 * 7 6 5 9 9 C 1.39522 * 120.69169 * 359.97438 * 8 7 6 10 10 C 1.47854 * 120.53270 * 179.97438 * 9 8 7 11 11 O 1.21546 * 120.00119 * 173.69494 * 10 9 8 12 12 N 1.34781 * 119.99887 * 353.69242 * 10 9 8 13 13 C 1.47420 * 125.64858 * 180.16671 * 12 10 9 14 14 C 1.54906 * 104.83220 * 204.09479 * 13 12 10 15 15 C 1.55157 * 101.58226 * 322.99104 * 14 13 12 16 16 H 1.08999 * 110.72083 * 153.86831 * 15 14 13 17 17 N 1.46507 * 110.72019 * 276.96244 * 15 14 13 18 18 C 1.36930 * 120.00139 * 208.46983 * 17 15 14 19 19 H 1.08001 * 120.00110 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00206 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99769 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00196 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47420 * 90.00030 * 22 20 18 24 24 H 1.48501 * 109.47106 * 210.00177 * 22 20 18 25 25 H 1.48497 * 109.47050 * 329.99633 * 22 20 18 26 26 C 1.47017 * 125.64822 * 359.86439 * 12 10 9 27 27 H 1.09000 * 109.88852 * 59.55577 * 26 12 10 28 28 C 1.53009 * 109.87924 * 298.39225 * 26 12 10 29 29 C 1.38845 * 120.40470 * 355.85609 * 5 4 2 30 30 H 1.09002 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47687 * 300.00234 * 1 2 3 32 32 H 1.09005 * 109.47241 * 59.99949 * 1 2 3 33 33 H 1.08992 * 109.47082 * 239.99930 * 2 1 3 34 34 H 1.08998 * 109.47591 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47082 * 300.00148 * 3 2 1 36 36 H 1.08994 * 109.47427 * 59.99516 * 3 2 1 37 37 H 1.07997 * 119.49929 * 359.70407 * 6 5 4 38 38 H 1.07997 * 119.65424 * 179.97438 * 8 7 6 39 39 H 1.09007 * 110.36943 * 322.93062 * 13 12 10 40 40 H 1.08998 * 110.37027 * 85.25485 * 13 12 10 41 41 H 1.09003 * 111.00556 * 81.06581 * 14 13 12 42 42 H 1.09001 * 111.00613 * 204.91445 * 14 13 12 43 43 H 0.97006 * 119.99469 * 28.46903 * 17 15 14 44 44 H 0.97003 * 119.99876 * 180.02562 * 21 20 18 45 45 H 1.08993 * 109.47294 * 53.33470 * 28 26 12 46 46 H 1.08995 * 109.46785 * 173.34296 * 28 26 12 47 47 H 1.09008 * 109.46747 * 293.33744 * 28 26 12 48 48 H 1.07996 * 120.87934 * 359.97438 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.1223 -2.0259 1.0945 6 6 2.6582 -2.7430 2.1559 7 7 2.7757 -4.0553 2.0984 8 6 2.3950 -4.7433 1.0422 9 6 1.8463 -4.0994 -0.0673 10 6 1.4205 -4.8753 -1.2517 11 8 0.8399 -4.3214 -2.1646 12 7 1.6763 -6.1969 -1.3190 13 6 1.3128 -7.0865 -2.4370 14 6 1.2392 -8.5012 -1.8103 15 6 2.4053 -8.4501 -0.7880 16 1 2.2279 -9.1431 0.0343 17 7 3.6825 -8.7427 -1.4435 18 6 4.7026 -9.3143 -0.7311 19 1 4.5656 -9.5499 0.3140 20 6 5.9125 -9.5920 -1.3522 21 7 6.0793 -9.3054 -2.6260 22 14 7.3039 -10.3725 -0.3805 23 1 7.2021 -11.8511 -0.4708 24 1 8.6067 -9.9309 -0.9398 25 1 7.2090 -9.9556 1.0416 26 6 2.3694 -6.9889 -0.2926 27 1 1.8249 -6.9323 0.6499 28 6 3.7948 -6.4649 -0.1056 29 6 1.7061 -2.7071 -0.0415 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 2.9877 -2.2178 3.0401 38 1 2.5086 -5.8173 1.0346 39 1 0.3438 -6.8028 -2.8480 40 1 2.0786 -7.0543 -3.2119 41 1 0.2849 -8.6564 -1.3069 42 1 1.4122 -9.2711 -2.5622 43 1 3.8053 -8.5314 -2.3823 44 1 6.9247 -9.4998 -3.0602 45 1 3.7650 -5.3934 0.0918 46 1 4.2625 -6.9765 0.7356 47 1 4.3722 -6.6516 -1.0111 48 1 1.2848 -2.1767 -0.8826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986664598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:11 Heat of formation + Delta-G solvation = 7.732057 kcal Electronic energy + Delta-G solvation = -29670.152026 eV Core-core repulsion = 25727.178153 eV Total energy + Delta-G solvation = -3942.973874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46753 -41.09488 -39.44800 -39.05438 -35.79541 -34.60982 -33.92310 -33.11690 -32.98298 -30.59134 -30.50794 -28.25123 -27.19169 -25.92505 -25.31343 -24.81077 -23.41007 -22.20305 -21.46660 -20.76116 -19.49624 -19.03406 -18.44076 -18.01940 -17.38170 -17.09916 -16.70569 -16.39221 -16.26894 -15.85429 -15.52609 -15.25798 -15.10547 -14.85470 -14.73708 -14.57668 -14.16564 -13.98801 -13.70574 -13.52143 -13.28275 -13.15011 -13.04475 -12.95793 -12.86588 -12.59492 -12.38919 -12.21775 -12.17475 -12.02983 -11.85480 -11.77068 -11.70337 -11.58407 -11.44131 -10.93285 -10.86936 -10.61921 -9.75181 -9.40614 -8.96268 -7.88365 -5.16004 -0.51869 0.08125 1.52050 1.53652 1.60265 1.65675 1.82899 2.00971 2.60497 2.68217 3.12944 3.35034 3.47383 3.56185 3.65657 3.73847 3.77054 3.82302 3.85558 3.89684 3.95761 4.08004 4.21750 4.30165 4.34176 4.38081 4.57609 4.63827 4.67256 4.70998 4.72055 4.78715 4.81681 4.84771 4.87469 4.98148 5.10065 5.15888 5.21397 5.22934 5.24616 5.28931 5.31102 5.60359 5.66110 6.12338 6.31913 6.40047 6.74504 6.93712 7.40580 8.12458 8.35382 9.34598 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.003131 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.258198 B = 8941.529164 C = 9813.056296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.063 3.937 3 C -0.143 4.143 4 O -0.305 6.305 5 C 0.069 3.931 6 C 0.098 3.902 7 N -0.467 5.467 8 C 0.068 3.932 9 C -0.166 4.166 10 C 0.572 3.428 11 O -0.579 6.579 12 N -0.593 5.593 13 C 0.109 3.891 14 C -0.129 4.129 15 C 0.165 3.835 16 H 0.096 0.904 17 N -0.716 5.716 18 C -0.221 4.221 19 H 0.085 0.915 20 C -0.072 4.072 21 N -0.969 5.969 22 Si 0.960 3.040 23 H -0.291 1.291 24 H -0.307 1.307 25 H -0.267 1.267 26 C 0.090 3.910 27 H 0.107 0.893 28 C -0.154 4.154 29 C -0.114 4.114 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.193 0.807 38 H 0.210 0.790 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.373 0.627 44 H 0.246 0.754 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.733 16.072 8.019 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.007 3.993 3 C -0.200 4.200 4 O -0.218 6.218 5 C 0.021 3.979 6 C -0.061 4.061 7 N -0.175 5.175 8 C -0.087 4.087 9 C -0.171 4.171 10 C 0.361 3.639 11 O -0.461 6.461 12 N -0.324 5.324 13 C -0.013 4.013 14 C -0.167 4.167 15 C 0.054 3.946 16 H 0.114 0.886 17 N -0.354 5.354 18 C -0.353 4.353 19 H 0.103 0.897 20 C -0.264 4.264 21 N -0.620 5.620 22 Si 0.790 3.210 23 H -0.219 1.219 24 H -0.235 1.235 25 H -0.191 1.191 26 C -0.015 4.015 27 H 0.124 0.876 28 C -0.212 4.212 29 C -0.141 4.141 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.210 0.790 38 H 0.225 0.775 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.205 0.795 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.552 16.024 8.551 22.078 hybrid contribution 0.876 0.030 -1.400 1.652 sum -11.676 16.055 7.151 21.100 Atomic orbital electron populations 1.22357 0.94009 1.02542 1.04479 1.22794 0.95311 0.94804 0.86344 1.21868 1.02044 0.91676 1.04411 1.86146 1.81212 1.14453 1.39953 1.19999 0.98178 0.84739 0.94976 1.22953 0.95795 0.89322 0.98003 1.67989 1.16193 1.07559 1.25809 1.25053 0.92053 1.04208 0.87406 1.20718 1.05318 0.94510 0.96580 1.17917 0.78846 0.80952 0.86139 1.90702 1.44798 1.69957 1.40659 1.48481 1.55664 1.06652 1.21573 1.22257 1.00333 0.89777 0.88957 1.23100 0.99511 0.94676 0.99437 1.21512 0.85859 0.91418 0.95801 0.88622 1.42529 1.10255 1.72133 1.10478 1.19564 0.91629 1.29776 0.94321 0.89676 1.25396 1.00517 1.03778 0.96723 1.69808 1.25267 1.55643 1.11249 0.85335 0.79107 0.77978 0.78539 1.21879 1.23460 1.19143 1.23083 0.92400 0.94774 0.91275 0.87551 1.22516 0.96126 0.99149 1.03423 1.21888 0.99891 0.93463 0.98825 0.93524 0.90589 0.89059 0.91483 0.91826 0.88492 0.90708 0.79043 0.77502 0.89950 0.93129 0.87571 0.89427 0.79500 0.94480 0.92618 0.90865 0.93168 0.83155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.22 71.98 0.66 -1.97 16 2 C 0.06 1.06 2.85 30.59 0.09 1.15 16 3 C -0.14 -1.67 9.56 71.98 0.69 -0.99 16 4 O -0.30 -6.41 9.81 -92.72 -0.91 -7.32 16 5 C 0.07 1.67 6.62 22.56 0.15 1.82 16 6 C 0.10 2.32 11.13 84.83 0.94 3.27 16 7 N -0.47 -12.88 10.34 -195.96 -2.03 -14.90 16 8 C 0.07 1.96 7.36 85.03 0.63 2.58 16 9 C -0.17 -5.09 5.43 -20.01 -0.11 -5.20 16 10 C 0.57 19.70 7.66 86.79 0.67 20.36 16 11 O -0.58 -22.73 16.69 -3.86 -0.06 -22.79 16 12 N -0.59 -18.92 3.06 -798.00 -2.45 -21.37 16 13 C 0.11 3.30 6.85 86.86 0.59 3.90 16 14 C -0.13 -3.42 6.69 31.99 0.21 -3.20 16 15 C 0.17 5.28 3.53 46.18 0.16 5.44 16 16 H 0.10 2.81 8.07 -2.39 -0.02 2.79 16 17 N -0.72 -30.91 3.65 -317.31 -1.16 -32.07 16 18 C -0.22 -10.73 8.72 84.03 0.73 -10.00 16 19 H 0.09 3.88 7.83 -2.91 -0.02 3.86 16 20 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 21 N -0.97 -56.45 13.06 21.65 0.28 -56.17 16 22 Si 0.96 43.90 29.55 68.60 2.03 45.93 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 24 H -0.31 -14.68 7.11 99.48 0.71 -13.98 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.09 2.71 2.69 45.35 0.12 2.84 16 27 H 0.11 2.66 6.27 -2.39 -0.01 2.64 16 28 C -0.15 -5.42 6.84 71.99 0.49 -4.93 16 29 C -0.11 -3.13 7.92 22.83 0.18 -2.95 16 30 H 0.05 0.86 7.09 -2.39 -0.02 0.84 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.07 1.24 6.24 -2.39 -0.01 1.23 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.21 5.78 2.09 -5.56 -0.01 5.77 16 39 H 0.08 2.34 8.04 -2.38 -0.02 2.32 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.37 18.17 7.85 -92.70 -0.73 17.44 16 44 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 45 H 0.06 1.89 4.15 -3.44 -0.01 1.88 16 46 H 0.07 2.57 7.95 -2.39 -0.02 2.55 16 47 H 0.05 2.19 6.80 -2.38 -0.02 2.18 16 48 H 0.15 4.03 5.34 -2.91 -0.02 4.01 16 Total: -1.00 -64.88 375.27 2.65 -62.23 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: 0.26 Total: 37.70 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.68 Total: 8.76 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -5.35 Total: -124.51 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.97 Total: -30.11 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -64.88 2.65 -62.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986664598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.966 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds