Wall clock time and date at job start Tue Mar 31 2020 17:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54323 * 109.88139 * 121.01725 * 2 1 3 5 5 H 1.09002 * 110.71769 * 260.12351 * 4 2 1 6 6 N 1.46498 * 110.72439 * 23.22335 * 4 2 1 7 7 C 1.36936 * 119.99971 * 204.99916 * 6 4 2 8 8 H 1.07998 * 119.99870 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99839 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00003 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99917 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46968 * 59.99905 * 11 9 7 13 13 H 1.48504 * 109.47105 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47119 * 299.99943 * 11 9 7 15 15 C 1.55164 * 102.94014 * 141.76813 * 4 2 1 16 16 C 1.54904 * 101.57813 * 324.49251 * 15 4 2 17 17 N 1.47021 * 110.01027 * 238.90147 * 2 1 3 18 18 C 1.34784 * 125.64833 * 61.52277 * 17 2 1 19 19 O 1.21489 * 119.99733 * 0.02562 * 18 17 2 20 20 C 1.48330 * 119.99923 * 180.02562 * 18 17 2 21 21 N 1.31339 * 127.13310 * 0.02562 * 20 18 17 22 22 O 1.21235 * 111.48775 * 179.88192 * 21 20 18 23 23 C 1.33648 * 111.63561 * 359.79641 * 22 21 20 24 24 C 1.34953 * 106.60443 * 0.17999 * 23 22 21 25 25 C 1.50108 * 126.61171 * 178.49482 * 24 23 22 26 26 C 1.53331 * 108.82487 * 28.54428 * 25 24 23 27 27 C 1.52662 * 109.56676 * 271.27994 * 26 25 24 28 28 C 1.52628 * 110.91284 * 61.43295 * 27 26 25 29 29 C 1.50615 * 127.97677 * 181.08127 * 23 22 21 30 30 H 1.09002 * 109.46917 * 299.29811 * 1 2 3 31 31 H 1.08999 * 109.47171 * 59.29872 * 1 2 3 32 32 H 1.08998 * 109.47003 * 179.29921 * 1 2 3 33 33 H 0.96998 * 119.99548 * 24.99809 * 6 4 2 34 34 H 0.96998 * 120.00036 * 180.02562 * 10 9 7 35 35 H 1.08991 * 111.00800 * 82.57191 * 15 4 2 36 36 H 1.09000 * 111.00097 * 206.38576 * 15 4 2 37 37 H 1.09002 * 110.36826 * 155.85543 * 16 15 4 38 38 H 1.09001 * 110.36870 * 278.06153 * 16 15 4 39 39 H 1.08995 * 109.77800 * 268.64053 * 25 24 23 40 40 H 1.09003 * 109.43997 * 148.24737 * 25 24 23 41 41 H 1.08998 * 109.45542 * 151.24674 * 26 25 24 42 42 H 1.09000 * 109.45471 * 31.30512 * 26 25 24 43 43 H 1.09006 * 109.18444 * 301.06446 * 27 26 25 44 44 H 1.09000 * 109.14809 * 181.77891 * 27 26 25 45 45 H 1.09004 * 109.39701 * 273.51335 * 28 27 26 46 46 H 1.09000 * 109.32098 * 153.74087 * 28 27 26 47 47 H 1.08993 * 109.54050 * 346.17236 * 29 23 22 48 48 H 1.08999 * 109.53763 * 106.42289 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 1 2.3504 -0.0432 2.0211 6 7 1.0470 -1.6827 1.7501 7 6 1.0607 -2.0569 3.0673 8 1 1.8142 -1.6625 3.7329 9 6 0.1054 -2.9424 3.5472 10 7 -0.8138 -3.4218 2.7364 11 14 0.1237 -3.4523 5.3442 12 1 -0.0382 -2.2505 6.2014 13 1 -0.9923 -4.3976 5.6018 14 1 1.4156 -4.1137 5.6579 15 6 3.2901 -1.5101 0.6953 16 6 2.8196 -1.8769 -0.7342 17 7 2.0331 -0.7135 -1.1829 18 6 1.8112 -0.3627 -2.4652 19 8 1.1443 0.6205 -2.7193 20 6 2.3813 -1.1770 -3.5662 21 7 3.1169 -2.2591 -3.4531 22 8 3.4291 -2.6994 -4.5387 23 6 2.9304 -1.9584 -5.5329 24 6 2.2402 -0.9526 -4.9555 25 6 1.5232 0.1616 -5.6610 26 6 1.0697 -0.3359 -7.0386 27 6 2.1765 -0.0897 -8.0609 28 6 3.4424 -0.8567 -7.6887 29 6 3.0706 -2.1819 -7.0157 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 0.5247 -0.8836 32 1 -0.3633 -1.0276 -0.0126 33 1 0.3701 -2.0366 1.1523 34 1 -1.4815 -4.0403 3.0718 35 1 4.1665 -0.8628 0.6642 36 1 3.4892 -2.4058 1.2836 37 1 3.6778 -2.0299 -1.3885 38 1 2.1972 -2.7715 -0.7109 39 1 2.1932 1.0126 -5.7826 40 1 0.6532 0.4606 -5.0763 41 1 0.1705 0.2010 -7.3406 42 1 0.8547 -1.4032 -6.9864 43 1 2.4008 0.9765 -8.0961 44 1 1.8351 -0.4166 -9.0431 45 1 4.0403 -0.2572 -7.0021 46 1 4.0203 -1.0582 -8.5906 47 1 3.8535 -2.9172 -7.2011 48 1 2.1256 -2.5439 -7.4208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987091060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:24 Heat of formation + Delta-G solvation = 41.250301 kcal Electronic energy + Delta-G solvation = -29696.473673 eV Core-core repulsion = 25754.953259 eV Total energy + Delta-G solvation = -3941.520414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.14428 -39.90782 -38.47984 -37.45515 -34.28472 -33.89838 -32.15609 -31.87862 -31.09508 -30.77305 -28.86720 -26.52945 -25.23540 -25.08317 -24.66515 -23.48058 -22.06930 -21.02714 -20.06692 -19.75775 -18.63004 -17.87193 -17.48816 -17.16408 -16.63562 -16.00043 -15.65347 -15.14460 -14.93091 -14.63520 -14.03918 -13.90447 -13.80738 -13.65974 -13.58015 -13.23178 -12.84310 -12.72900 -12.61381 -12.34703 -12.25188 -11.96561 -11.76972 -11.49982 -11.24026 -11.18600 -10.99776 -10.96507 -10.88069 -10.74685 -10.66719 -10.61371 -10.29034 -10.22860 -10.09318 -9.80589 -9.60802 -9.22231 -8.95337 -8.36261 -7.03388 -5.81543 -3.11389 1.12410 1.61388 2.78245 3.04297 3.31175 3.41534 3.46289 3.47178 3.95750 4.28210 4.41027 4.49576 4.54610 4.61385 4.68683 4.77529 4.98478 5.03456 5.12047 5.13378 5.29892 5.39229 5.41260 5.47853 5.49063 5.59088 5.62162 5.62693 5.68222 5.72608 5.78214 5.84894 5.87444 5.89761 5.99655 6.04706 6.17914 6.20231 6.36119 6.42652 6.53206 6.61000 6.74445 6.84412 7.00629 7.65761 7.70721 7.95163 8.27747 8.36517 9.47956 10.02850 10.38076 11.40625 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.002704 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.327871 B =10354.027854 C =10662.384287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.126 3.874 3 H 0.074 0.926 4 C 0.172 3.828 5 H 0.072 0.928 6 N -0.713 5.713 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.160 4.160 16 C 0.104 3.896 17 N -0.590 5.590 18 C 0.607 3.393 19 O -0.529 6.529 20 C -0.012 4.012 21 N -0.327 5.327 22 O 0.120 5.880 23 C -0.041 4.041 24 C -0.147 4.147 25 C -0.046 4.046 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.117 4.117 29 C -0.037 4.037 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.388 0.612 34 H 0.257 0.743 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 5.201 -22.799 25.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.023 3.977 3 H 0.092 0.908 4 C 0.060 3.940 5 H 0.090 0.910 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.201 4.201 16 C -0.018 4.018 17 N -0.323 5.323 18 C 0.393 3.607 19 O -0.406 6.406 20 C -0.171 4.171 21 N -0.029 5.029 22 O 0.046 5.954 23 C -0.105 4.105 24 C -0.152 4.152 25 C -0.084 4.084 26 C -0.163 4.163 27 C -0.160 4.160 28 C -0.154 4.154 29 C -0.075 4.075 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.225 0.775 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.009 5.046 -21.694 24.026 hybrid contribution -0.494 -0.197 0.484 0.719 sum 8.515 4.849 -21.210 23.364 Atomic orbital electron populations 1.21926 0.93952 1.03064 1.01782 1.22105 0.95624 0.95643 0.84299 0.90830 1.21202 0.89122 0.91726 0.91925 0.91009 1.42547 1.32562 1.51514 1.08878 1.19195 1.10859 1.21458 0.86060 0.91038 1.24752 0.97885 1.00030 0.97938 1.69651 1.18296 1.35528 1.34345 0.86257 0.76965 0.78050 0.84808 1.21218 1.21737 1.21241 1.23541 0.99193 1.02427 0.94962 1.22464 0.95013 0.88160 0.96161 1.48503 1.50744 1.28702 1.04373 1.16431 0.80466 0.83520 0.80279 1.90736 1.40096 1.26824 1.82903 1.23205 1.02376 0.96217 0.95261 1.74562 1.14171 1.11454 1.02725 1.84784 1.55928 1.44501 1.10140 1.24064 0.99407 0.93428 0.93580 1.20639 1.03141 1.00330 0.91045 1.20001 1.00143 0.93684 0.94526 1.21756 0.98408 1.02089 0.94061 1.21560 0.94912 1.00677 0.98843 1.21584 0.98292 0.94936 1.00635 1.20245 1.04119 0.99532 0.83587 0.91176 0.92697 0.91540 0.77542 0.93355 0.92076 0.89285 0.90439 0.90998 0.90103 0.88944 0.91037 0.91220 0.91485 0.91694 0.91281 0.90498 0.89322 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.50 37.16 0.32 -2.59 16 2 C 0.13 2.32 3.42 -66.95 -0.23 2.10 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.17 3.38 3.47 -66.09 -0.23 3.15 16 5 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 6 N -0.71 -17.24 4.56 -51.65 -0.24 -17.48 16 7 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 11 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 C -0.16 -2.79 6.78 -24.58 -0.17 -2.95 16 16 C 0.10 1.82 6.16 -2.53 -0.02 1.81 16 17 N -0.59 -10.65 3.07 -163.94 -0.50 -11.15 16 18 C 0.61 10.97 7.67 -12.10 -0.09 10.88 16 19 O -0.53 -10.25 14.54 5.38 0.08 -10.17 16 20 C -0.01 -0.19 7.01 -82.71 -0.58 -0.77 16 21 N -0.33 -5.02 9.35 33.31 0.31 -4.71 16 22 O 0.12 1.55 11.19 18.11 0.20 1.75 16 23 C -0.04 -0.44 6.63 -35.52 -0.24 -0.68 16 24 C -0.15 -1.87 5.72 -104.86 -0.60 -2.47 16 25 C -0.05 -0.50 5.38 -28.00 -0.15 -0.65 16 26 C -0.13 -0.96 5.55 -26.73 -0.15 -1.10 16 27 C -0.12 -0.69 5.64 -27.10 -0.15 -0.85 16 28 C -0.12 -0.65 5.63 -26.81 -0.15 -0.81 16 29 C -0.04 -0.24 5.56 -27.82 -0.15 -0.39 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.05 1.05 6.90 -51.93 -0.36 0.69 16 32 H 0.07 1.45 6.22 -51.93 -0.32 1.13 16 33 H 0.39 10.15 5.68 -40.82 -0.23 9.91 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 37 H 0.08 1.27 6.24 -51.93 -0.32 0.95 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.08 0.82 7.83 -51.93 -0.41 0.42 16 40 H 0.09 1.19 7.08 -51.93 -0.37 0.82 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.54 5.68 -51.93 -0.30 0.24 16 43 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.48 7.80 -51.93 -0.40 0.07 16 46 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.10 0.54 6.37 -51.93 -0.33 0.21 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -30.99 370.60 -8.93 -39.92 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.23 Total: 8.60 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.84 Total: -2.40 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.30 Total: -60.31 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.28 Total: -8.42 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.99 -8.93 -39.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987091060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.174 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds