Wall clock time and date at job start Tue Mar 31 2020 17:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54323 * 109.88139 * 121.01725 * 2 1 3 5 5 H 1.09002 * 110.71769 * 260.12351 * 4 2 1 6 6 N 1.46498 * 110.72439 * 23.22335 * 4 2 1 7 7 C 1.36936 * 119.99971 * 204.99916 * 6 4 2 8 8 H 1.07998 * 119.99870 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99839 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00003 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99917 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46968 * 59.99905 * 11 9 7 13 13 H 1.48504 * 109.47105 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47119 * 299.99943 * 11 9 7 15 15 C 1.55164 * 102.94014 * 141.76813 * 4 2 1 16 16 C 1.54904 * 101.57813 * 324.49251 * 15 4 2 17 17 N 1.47021 * 110.01027 * 238.90147 * 2 1 3 18 18 C 1.34784 * 125.64833 * 61.52277 * 17 2 1 19 19 O 1.21489 * 119.99733 * 0.02562 * 18 17 2 20 20 C 1.48330 * 119.99923 * 180.02562 * 18 17 2 21 21 N 1.31339 * 127.13310 * 0.02562 * 20 18 17 22 22 O 1.21235 * 111.48775 * 179.88192 * 21 20 18 23 23 C 1.33648 * 111.63561 * 359.79641 * 22 21 20 24 24 C 1.34953 * 106.60443 * 0.17999 * 23 22 21 25 25 C 1.50108 * 126.61171 * 178.49482 * 24 23 22 26 26 C 1.53331 * 108.82487 * 28.54428 * 25 24 23 27 27 C 1.52662 * 109.56676 * 271.27994 * 26 25 24 28 28 C 1.52628 * 110.91284 * 61.43295 * 27 26 25 29 29 C 1.50615 * 127.97677 * 181.08127 * 23 22 21 30 30 H 1.09002 * 109.46917 * 299.29811 * 1 2 3 31 31 H 1.08999 * 109.47171 * 59.29872 * 1 2 3 32 32 H 1.08998 * 109.47003 * 179.29921 * 1 2 3 33 33 H 0.96998 * 119.99548 * 24.99809 * 6 4 2 34 34 H 0.96998 * 120.00036 * 180.02562 * 10 9 7 35 35 H 1.08991 * 111.00800 * 82.57191 * 15 4 2 36 36 H 1.09000 * 111.00097 * 206.38576 * 15 4 2 37 37 H 1.09002 * 110.36826 * 155.85543 * 16 15 4 38 38 H 1.09001 * 110.36870 * 278.06153 * 16 15 4 39 39 H 1.08995 * 109.77800 * 268.64053 * 25 24 23 40 40 H 1.09003 * 109.43997 * 148.24737 * 25 24 23 41 41 H 1.08998 * 109.45542 * 151.24674 * 26 25 24 42 42 H 1.09000 * 109.45471 * 31.30512 * 26 25 24 43 43 H 1.09006 * 109.18444 * 301.06446 * 27 26 25 44 44 H 1.09000 * 109.14809 * 181.77891 * 27 26 25 45 45 H 1.09004 * 109.39701 * 273.51335 * 28 27 26 46 46 H 1.09000 * 109.32098 * 153.74087 * 28 27 26 47 47 H 1.08993 * 109.54050 * 346.17236 * 29 23 22 48 48 H 1.08999 * 109.53763 * 106.42289 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 1 2.3504 -0.0432 2.0211 6 7 1.0470 -1.6827 1.7501 7 6 1.0607 -2.0569 3.0673 8 1 1.8142 -1.6625 3.7329 9 6 0.1054 -2.9424 3.5472 10 7 -0.8138 -3.4218 2.7364 11 14 0.1237 -3.4523 5.3442 12 1 -0.0382 -2.2505 6.2014 13 1 -0.9923 -4.3976 5.6018 14 1 1.4156 -4.1137 5.6579 15 6 3.2901 -1.5101 0.6953 16 6 2.8196 -1.8769 -0.7342 17 7 2.0331 -0.7135 -1.1829 18 6 1.8112 -0.3627 -2.4652 19 8 1.1443 0.6205 -2.7193 20 6 2.3813 -1.1770 -3.5662 21 7 3.1169 -2.2591 -3.4531 22 8 3.4291 -2.6994 -4.5387 23 6 2.9304 -1.9584 -5.5329 24 6 2.2402 -0.9526 -4.9555 25 6 1.5232 0.1616 -5.6610 26 6 1.0697 -0.3359 -7.0386 27 6 2.1765 -0.0897 -8.0609 28 6 3.4424 -0.8567 -7.6887 29 6 3.0706 -2.1819 -7.0157 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 0.5247 -0.8836 32 1 -0.3633 -1.0276 -0.0126 33 1 0.3701 -2.0366 1.1523 34 1 -1.4815 -4.0403 3.0718 35 1 4.1665 -0.8628 0.6642 36 1 3.4892 -2.4058 1.2836 37 1 3.6778 -2.0299 -1.3885 38 1 2.1972 -2.7715 -0.7109 39 1 2.1932 1.0126 -5.7826 40 1 0.6532 0.4606 -5.0763 41 1 0.1705 0.2010 -7.3406 42 1 0.8547 -1.4032 -6.9864 43 1 2.4008 0.9765 -8.0961 44 1 1.8351 -0.4166 -9.0431 45 1 4.0403 -0.2572 -7.0021 46 1 4.0203 -1.0582 -8.5906 47 1 3.8535 -2.9172 -7.2011 48 1 2.1256 -2.5439 -7.4208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987091060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:23 Heat of formation + Delta-G solvation = 23.705664 kcal Electronic energy + Delta-G solvation = -29697.234465 eV Core-core repulsion = 25754.953259 eV Total energy + Delta-G solvation = -3942.281206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.22281 -41.38365 -39.28872 -38.82504 -35.88338 -35.18945 -33.45856 -32.90444 -32.37206 -32.12606 -30.62088 -27.35341 -26.83534 -26.02228 -25.77703 -25.33296 -23.41474 -22.03542 -21.26422 -20.58632 -19.96764 -19.42741 -18.96031 -18.26200 -17.94801 -17.48742 -16.53941 -16.45404 -16.21282 -15.76762 -15.73322 -15.50129 -14.85656 -14.70463 -14.42421 -14.37104 -14.26535 -14.21633 -13.95344 -13.43542 -13.31078 -13.17780 -12.92314 -12.84900 -12.81236 -12.62852 -12.36952 -12.28523 -12.13650 -12.12244 -11.80844 -11.75713 -11.55883 -11.52537 -11.35014 -11.33324 -11.12932 -10.94139 -10.11774 -9.84506 -9.04415 -7.94087 -5.23395 -0.00725 0.61140 1.48376 1.50767 1.56609 1.60191 1.94633 2.00396 2.55948 2.76144 3.30731 3.39299 3.61989 3.63898 3.77903 3.83111 3.90709 3.94543 4.03580 4.13363 4.17803 4.20093 4.27006 4.31445 4.38605 4.43933 4.46915 4.68753 4.73483 4.75875 4.82041 4.85522 4.88773 4.94412 4.98130 5.07727 5.09166 5.18216 5.24718 5.25817 5.28721 5.35049 5.35777 5.43793 5.53228 5.53912 6.26095 6.26810 6.74165 7.02186 7.33539 8.05560 8.30139 9.29151 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.002704 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.327871 B =10354.027854 C =10662.384287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.131 3.869 3 H 0.092 0.908 4 C 0.166 3.834 5 H 0.084 0.916 6 N -0.724 5.724 7 C -0.238 4.238 8 H 0.083 0.917 9 C -0.074 4.074 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.278 1.278 13 H -0.301 1.301 14 H -0.277 1.277 15 C -0.146 4.146 16 C 0.114 3.886 17 N -0.594 5.594 18 C 0.603 3.397 19 O -0.549 6.549 20 C -0.042 4.042 21 N -0.347 5.347 22 O 0.128 5.872 23 C -0.020 4.020 24 C -0.162 4.162 25 C -0.043 4.043 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.114 4.114 29 C -0.037 4.037 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.375 0.625 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.104 0.896 47 H 0.112 0.888 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.991 5.466 -24.735 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.027 3.973 3 H 0.110 0.890 4 C 0.056 3.944 5 H 0.102 0.898 6 N -0.365 5.365 7 C -0.369 4.369 8 H 0.101 0.899 9 C -0.266 4.266 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.204 1.204 13 H -0.228 1.228 14 H -0.203 1.203 15 C -0.187 4.187 16 C -0.008 4.008 17 N -0.327 5.327 18 C 0.390 3.610 19 O -0.426 6.426 20 C -0.199 4.199 21 N -0.048 5.048 22 O 0.053 5.947 23 C -0.083 4.083 24 C -0.167 4.167 25 C -0.081 4.081 26 C -0.159 4.159 27 C -0.156 4.156 28 C -0.152 4.152 29 C -0.075 4.075 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.209 0.791 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.122 0.878 47 H 0.131 0.869 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.089 5.351 -23.618 26.634 hybrid contribution -1.078 -0.233 0.961 1.462 sum 10.011 5.118 -22.657 25.293 Atomic orbital electron populations 1.21761 0.95098 1.00991 1.01536 1.22016 0.94605 0.96414 0.84219 0.89034 1.21419 0.88928 0.91410 0.92664 0.89821 1.42687 1.33441 1.52301 1.08088 1.19620 1.10067 1.20077 0.87158 0.89906 1.25542 0.98205 1.01071 1.01828 1.69826 1.19419 1.36833 1.36077 0.85219 0.76695 0.77545 0.80311 1.20372 1.22777 1.20324 1.23409 0.99100 1.02077 0.94136 1.22334 0.94803 0.87041 0.96623 1.48535 1.50939 1.28740 1.04457 1.16777 0.80048 0.83518 0.80620 1.90710 1.40894 1.27762 1.83274 1.23124 1.03894 0.96956 0.95919 1.74519 1.14727 1.11532 1.04052 1.84744 1.55435 1.44380 1.10181 1.24848 0.97064 0.91543 0.94886 1.20922 1.04171 1.01725 0.89919 1.20010 0.98818 0.93400 0.95869 1.21754 0.99525 1.02022 0.92563 1.21555 0.94153 1.00966 0.98967 1.21608 0.98280 0.94008 1.01271 1.20584 1.05956 1.00856 0.80105 0.91449 0.92751 0.94415 0.79056 0.94196 0.88916 0.90437 0.89035 0.93638 0.89869 0.91840 0.90458 0.91115 0.91384 0.89570 0.92758 0.87768 0.86929 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 8.50 71.98 0.61 -4.85 16 2 C 0.13 4.81 3.42 45.34 0.16 4.97 16 3 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 4 C 0.17 6.42 3.47 46.18 0.16 6.59 16 5 H 0.08 3.07 8.09 -2.39 -0.02 3.05 16 6 N -0.72 -35.61 4.56 -317.32 -1.45 -37.05 16 7 C -0.24 -12.75 9.96 84.03 0.84 -11.91 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 9 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 10 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 11 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 15 C -0.15 -4.96 6.78 31.99 0.22 -4.74 16 16 C 0.11 4.02 6.16 86.85 0.54 4.55 16 17 N -0.59 -21.69 3.07 -790.89 -2.43 -24.12 16 18 C 0.60 22.30 7.67 86.93 0.67 22.97 16 19 O -0.55 -21.87 14.54 -3.68 -0.05 -21.93 16 20 C -0.04 -1.36 7.01 42.69 0.30 -1.06 16 21 N -0.35 -10.62 9.35 -49.02 -0.46 -11.08 16 22 O 0.13 3.16 11.19 74.87 0.84 4.00 16 23 C -0.02 -0.38 6.63 24.90 0.17 -0.22 16 24 C -0.16 -4.07 5.72 -20.02 -0.11 -4.19 16 25 C -0.04 -0.93 5.38 29.77 0.16 -0.77 16 26 C -0.12 -1.63 5.55 30.59 0.17 -1.46 16 27 C -0.12 -0.97 5.64 30.36 0.17 -0.80 16 28 C -0.11 -0.87 5.63 30.54 0.17 -0.70 16 29 C -0.04 -0.35 5.56 29.89 0.17 -0.18 16 30 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.05 2.16 6.90 -2.39 -0.02 2.14 16 32 H 0.04 1.72 6.22 -2.39 -0.01 1.71 16 33 H 0.38 20.40 5.68 -92.71 -0.53 19.87 16 34 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.09 2.97 6.24 -2.39 -0.01 2.95 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 1.68 7.83 -2.39 -0.02 1.66 16 40 H 0.06 1.71 7.08 -2.39 -0.02 1.70 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.93 5.68 -2.39 -0.01 0.92 16 43 H 0.07 0.57 8.09 -2.38 -0.02 0.55 16 44 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.05 0.61 7.80 -2.38 -0.02 0.59 16 46 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.12 0.80 6.37 -2.39 -0.02 0.79 16 Total: -1.00 -69.31 370.60 4.06 -65.25 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.46 Total: 31.94 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 4.84 Total: 4.46 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -4.05 Total: -131.53 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.78 Total: -17.92 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -69.31 4.06 -65.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987091060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.958 kcal (2) G-P(sol) polarization free energy of solvation -69.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds