Wall clock time and date at job start Tue Mar 31 2020 17:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.87836 * 2 1 4 4 C 1.54321 * 109.88530 * 121.17387 * 2 1 3 5 5 H 1.09005 * 110.71806 * 23.24533 * 4 2 1 6 6 N 1.46500 * 110.72327 * 259.97752 * 4 2 1 7 7 C 1.36932 * 120.00360 * 154.99470 * 6 4 2 8 8 H 1.08001 * 120.00103 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00425 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00631 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99822 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47377 * 89.99867 * 11 9 7 13 13 H 1.48500 * 109.46994 * 209.99913 * 11 9 7 14 14 H 1.48503 * 109.46802 * 329.99990 * 11 9 7 15 15 C 1.55159 * 102.94611 * 141.60771 * 4 2 1 16 16 C 1.55125 * 101.48615 * 324.33673 * 15 4 2 17 17 N 1.47022 * 109.88352 * 238.98278 * 2 1 3 18 18 C 1.34780 * 125.64840 * 61.60924 * 17 2 1 19 19 O 1.21487 * 119.99703 * 359.97438 * 18 17 2 20 20 C 1.48330 * 119.99767 * 180.02562 * 18 17 2 21 21 N 1.31341 * 127.13641 * 359.68041 * 20 18 17 22 22 O 1.21239 * 111.48465 * 180.21919 * 21 20 18 23 23 C 1.33655 * 111.63715 * 359.72943 * 22 21 20 24 24 C 1.34945 * 106.60363 * 0.48089 * 23 22 21 25 25 C 1.50088 * 126.62095 * 178.90137 * 24 23 22 26 26 C 1.53336 * 108.92148 * 28.01667 * 25 24 23 27 27 C 1.52663 * 109.57100 * 271.48833 * 26 25 24 28 28 C 1.52624 * 110.91189 * 61.43921 * 27 26 25 29 29 C 1.50614 * 127.96424 * 181.17710 * 23 22 21 30 30 H 1.08997 * 109.46986 * 179.55934 * 1 2 3 31 31 H 1.09002 * 109.47058 * 299.56457 * 1 2 3 32 32 H 1.08997 * 109.46959 * 59.56542 * 1 2 3 33 33 H 0.97002 * 119.99963 * 334.99436 * 6 4 2 34 34 H 0.96998 * 120.00362 * 179.97438 * 10 9 7 35 35 H 1.09004 * 110.99803 * 82.57781 * 15 4 2 36 36 H 1.08997 * 111.00211 * 206.42493 * 15 4 2 37 37 H 1.08997 * 110.49773 * 278.45355 * 16 15 4 38 38 H 1.08999 * 110.34407 * 156.05809 * 16 15 4 39 39 H 1.09003 * 109.56719 * 147.84725 * 25 24 23 40 40 H 1.09001 * 109.56451 * 268.18463 * 25 24 23 41 41 H 1.09003 * 109.45086 * 151.46036 * 26 25 24 42 42 H 1.08999 * 109.44007 * 31.51216 * 26 25 24 43 43 H 1.08991 * 109.18963 * 301.06778 * 27 26 25 44 44 H 1.09010 * 109.14718 * 181.77823 * 27 26 25 45 45 H 1.09001 * 109.39579 * 273.51061 * 28 27 26 46 46 H 1.09001 * 109.32341 * 153.73732 * 28 27 26 47 47 H 1.09006 * 109.53989 * 346.12605 * 29 23 22 48 48 H 1.08996 * 109.54120 * 106.29381 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7512 1.2416 5 1 1.3051 -1.4481 1.6163 6 7 2.4555 0.1929 2.2878 7 6 2.4582 -0.1994 3.5997 8 1 2.1654 -1.2050 3.8632 9 6 2.8382 0.6950 4.5909 10 7 2.8413 0.3177 5.8519 11 14 3.3453 2.4341 4.1351 12 1 2.1509 3.3164 4.1436 13 1 4.3374 2.9346 5.1202 14 1 3.9509 2.4338 2.7791 15 6 3.2877 -1.5152 0.6903 16 6 2.8100 -1.8815 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8075 -0.3586 -2.4662 19 8 1.1418 0.6261 -2.7176 20 6 2.3743 -1.1721 -3.5694 21 7 3.1128 -2.2527 -3.4592 22 8 3.4265 -2.6888 -4.5461 23 6 2.9250 -1.9470 -5.5383 24 6 2.2368 -0.9416 -4.9581 25 6 1.5108 0.1685 -5.6605 26 6 1.0577 -0.3277 -7.0388 27 6 2.1627 -0.0758 -8.0617 28 6 3.4313 -0.8397 -7.6923 29 6 3.0644 -2.1675 -7.0217 30 1 -0.3633 -1.0276 -0.0079 31 1 -0.3633 0.5071 0.8939 32 1 -0.3633 0.5206 -0.8860 33 1 2.7188 1.0960 2.0511 34 1 3.1073 0.9426 6.5445 35 1 4.1655 -0.8697 0.6593 36 1 3.4852 -2.4128 1.2763 37 1 2.1802 -2.7708 -0.7153 38 1 3.6656 -2.0393 -1.3960 39 1 0.6403 0.4636 -5.0746 40 1 2.1780 1.0220 -5.7811 41 1 0.1565 0.2071 -7.3389 42 1 0.8462 -1.3958 -6.9884 43 1 2.3836 0.9909 -8.0950 44 1 1.8214 -0.4019 -9.0443 45 1 4.0280 -0.2398 -7.0051 46 1 4.0090 -1.0376 -8.5952 47 1 3.8496 -2.8999 -7.2092 48 1 2.1206 -2.5331 -7.4262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987091064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:29 Heat of formation + Delta-G solvation = 39.671282 kcal Electronic energy + Delta-G solvation = -29428.780579 eV Core-core repulsion = 25487.191693 eV Total energy + Delta-G solvation = -3941.588885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.27934 -40.05416 -38.57771 -37.55887 -34.47743 -34.15269 -32.26897 -31.99541 -31.31405 -30.96180 -29.59191 -26.64355 -25.39651 -25.20558 -24.84070 -22.70277 -22.21471 -21.15756 -20.31022 -20.12083 -19.08776 -18.01581 -17.63435 -17.31394 -16.86821 -16.13407 -15.76240 -15.24198 -15.13864 -14.65459 -14.22755 -14.03590 -13.87351 -13.70729 -13.69362 -13.42558 -12.90511 -12.83519 -12.73814 -12.41394 -12.33960 -12.26814 -12.00862 -11.71085 -11.59342 -11.33348 -11.29309 -11.24919 -11.00417 -10.89579 -10.80858 -10.65545 -10.44446 -10.34304 -10.12973 -9.97529 -9.64475 -9.34380 -8.98914 -8.57135 -7.36336 -5.83289 -3.20756 0.97379 1.47947 2.63919 2.85349 3.13806 3.35023 3.38451 3.43080 3.79664 4.15583 4.31427 4.39525 4.51388 4.53962 4.58002 4.66321 4.87473 4.93093 4.94266 4.96394 5.15131 5.20614 5.28202 5.32122 5.38018 5.43943 5.48702 5.53463 5.54636 5.57208 5.64150 5.69491 5.76958 5.79190 5.80455 5.89402 5.95428 5.98216 6.08038 6.20462 6.31022 6.48450 6.51607 6.54549 6.77556 7.50566 7.79820 7.90321 8.10435 8.34983 9.11368 9.83956 10.02246 11.34370 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024202 B = 0.002646 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.631145 B =10578.195602 C =10959.572947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 H 0.077 0.923 4 C 0.182 3.818 5 H 0.078 0.922 6 N -0.738 5.738 7 C -0.248 4.248 8 H 0.093 0.907 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.155 4.155 16 C 0.096 3.904 17 N -0.593 5.593 18 C 0.608 3.392 19 O -0.526 6.526 20 C -0.012 4.012 21 N -0.329 5.329 22 O 0.120 5.880 23 C -0.039 4.039 24 C -0.147 4.147 25 C -0.047 4.047 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.117 4.117 29 C -0.037 4.037 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.363 0.637 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 -5.229 -30.705 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.095 0.905 4 C 0.071 3.929 5 H 0.096 0.904 6 N -0.379 5.379 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.326 5.326 18 C 0.394 3.606 19 O -0.401 6.401 20 C -0.171 4.171 21 N -0.031 5.031 22 O 0.047 5.953 23 C -0.102 4.102 24 C -0.151 4.151 25 C -0.084 4.084 26 C -0.162 4.162 27 C -0.160 4.160 28 C -0.155 4.155 29 C -0.075 4.075 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.196 0.804 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.107 0.893 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.708 -5.445 -29.538 30.044 hybrid contribution 0.244 1.638 -0.480 1.724 sum -0.464 -3.807 -30.018 30.262 Atomic orbital electron populations 1.22069 0.94347 1.02075 1.02922 1.22052 0.94906 0.96728 0.84237 0.90470 1.21227 0.94037 0.91290 0.86368 0.90379 1.42695 1.80735 1.11156 1.03350 1.19028 1.38947 0.99082 0.80693 0.88953 1.24658 1.01210 0.97781 0.95068 1.69694 1.53840 1.35262 0.98891 0.86594 0.78503 0.86222 0.77474 1.20887 1.21622 1.20315 1.23595 1.00831 1.02037 0.93121 1.22631 0.95392 0.87579 0.97042 1.48411 1.51277 1.28553 1.04389 1.16452 0.80441 0.83502 0.80205 1.90752 1.39986 1.26477 1.82906 1.23173 1.02424 0.96257 0.95236 1.74539 1.13969 1.11812 1.02784 1.84781 1.55771 1.44628 1.10138 1.24077 0.99201 0.93328 0.93622 1.20643 1.03245 1.00261 0.90991 1.20011 1.00045 0.93806 0.94587 1.21753 0.98470 1.01997 0.94023 1.21562 0.94865 1.00774 0.98846 1.21589 0.98322 0.94872 1.00733 1.20258 1.04156 0.99606 0.83483 0.92727 0.90781 0.91850 0.80364 0.92923 0.90769 0.89902 0.91372 0.89867 0.88966 0.90029 0.91008 0.91258 0.91425 0.91646 0.91243 0.90417 0.89267 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.10 37.16 0.34 -2.19 16 2 C 0.12 2.17 3.21 -66.95 -0.21 1.95 16 3 H 0.08 1.45 7.72 -51.93 -0.40 1.05 16 4 C 0.18 3.44 3.14 -66.10 -0.21 3.24 16 5 H 0.08 1.49 7.80 -51.93 -0.41 1.09 16 6 N -0.74 -17.04 5.03 -51.65 -0.26 -17.30 16 7 C -0.25 -6.78 10.44 -15.06 -0.16 -6.94 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 10 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 11 Si 0.88 21.95 27.74 -169.99 -4.71 17.24 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 15 C -0.15 -2.61 6.78 -24.46 -0.17 -2.77 16 16 C 0.10 1.44 6.20 -2.41 -0.01 1.43 16 17 N -0.59 -9.71 3.06 -163.80 -0.50 -10.21 16 18 C 0.61 10.06 7.67 -12.11 -0.09 9.96 16 19 O -0.53 -9.53 14.54 5.38 0.08 -9.45 16 20 C -0.01 -0.18 7.01 -82.70 -0.58 -0.76 16 21 N -0.33 -4.45 9.34 33.32 0.31 -4.14 16 22 O 0.12 1.36 11.19 18.09 0.20 1.57 16 23 C -0.04 -0.36 6.63 -35.52 -0.24 -0.60 16 24 C -0.15 -1.68 5.72 -104.87 -0.60 -2.28 16 25 C -0.05 -0.46 5.37 -28.00 -0.15 -0.61 16 26 C -0.13 -0.81 5.55 -26.73 -0.15 -0.96 16 27 C -0.12 -0.60 5.64 -27.10 -0.15 -0.75 16 28 C -0.12 -0.57 5.63 -26.82 -0.15 -0.72 16 29 C -0.04 -0.20 5.55 -27.82 -0.15 -0.35 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.04 6.88 -51.93 -0.36 0.69 16 33 H 0.36 8.40 5.43 -40.82 -0.22 8.17 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.21 6.22 -51.93 -0.32 0.89 16 39 H 0.09 1.07 7.09 -51.93 -0.37 0.70 16 40 H 0.08 0.78 7.83 -51.93 -0.41 0.37 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.44 5.69 -51.93 -0.30 0.15 16 43 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 44 H 0.06 0.24 8.14 -51.92 -0.42 -0.18 16 45 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 46 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.10 0.42 6.38 -51.93 -0.33 0.09 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -32.05 371.29 -8.63 -40.68 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.33 Total: 6.18 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.78 Total: -2.19 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.32 Total: -59.61 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.28 Total: -7.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.05 -8.63 -40.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987091064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.348 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds