Wall clock time and date at job start Tue Mar 31 2020 17:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47278 * 2 1 4 4 C 1.50699 * 109.47628 * 120.00617 * 2 1 3 5 5 C 1.38356 * 119.40322 * 275.00203 * 4 2 1 6 6 C 1.38342 * 119.45744 * 179.97438 * 5 4 2 7 7 C 1.39979 * 118.34714 * 0.02562 * 6 5 4 8 8 C 1.47534 * 120.59461 * 179.97438 * 7 6 5 9 9 O 1.21590 * 119.99788 * 181.59807 * 8 7 6 10 10 N 1.34777 * 120.00155 * 1.60160 * 8 7 6 11 11 C 1.47419 * 125.64730 * 185.05758 * 10 8 7 12 12 C 1.55131 * 104.72072 * 155.81977 * 11 10 8 13 13 C 1.55158 * 101.48890 * 37.29208 * 12 11 10 14 14 H 1.09005 * 110.71651 * 205.97398 * 13 12 11 15 15 N 1.46493 * 110.72034 * 82.70019 * 13 12 11 16 16 C 1.36937 * 120.00555 * 91.47564 * 15 13 12 17 17 H 1.08000 * 119.99106 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00541 * 179.97438 * 16 15 13 19 19 N 1.31623 * 120.00002 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46864 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46990 * 119.99919 * 20 18 16 23 23 H 1.48500 * 109.46788 * 240.00295 * 20 18 16 24 24 C 1.47027 * 125.64483 * 5.36217 * 10 8 7 25 25 H 1.08997 * 109.88138 * 300.59523 * 24 10 8 26 26 C 1.53003 * 109.88035 * 61.60682 * 24 10 8 27 27 C 1.40283 * 118.80915 * 359.93359 * 7 6 5 28 28 O 1.35428 * 119.79896 * 180.02562 * 27 7 6 29 29 N 1.31882 * 119.41029 * 94.97163 * 4 2 1 30 30 H 1.08997 * 109.47263 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46679 * 299.99544 * 1 2 3 32 32 H 1.08992 * 109.47011 * 59.99587 * 1 2 3 33 33 H 1.09004 * 109.46679 * 240.00456 * 2 1 3 34 34 H 1.09004 * 109.47150 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46943 * 300.00455 * 3 2 1 36 36 H 1.08994 * 109.46796 * 60.00409 * 3 2 1 37 37 H 1.08004 * 120.27097 * 359.71871 * 5 4 2 38 38 H 1.08004 * 120.82580 * 179.97438 * 6 5 4 39 39 H 1.09000 * 110.36850 * 274.74018 * 11 10 8 40 40 H 1.08992 * 110.37027 * 37.06720 * 11 10 8 41 41 H 1.09005 * 111.18945 * 279.18962 * 12 11 10 42 42 H 1.08998 * 110.94033 * 155.28723 * 12 11 10 43 43 H 0.97006 * 119.99843 * 271.48075 * 15 13 12 44 44 H 0.96993 * 120.00332 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.46756 * 69.68261 * 26 24 10 46 46 H 1.09000 * 109.46571 * 189.67485 * 26 24 10 47 47 H 1.08990 * 109.47186 * 309.67561 * 26 24 10 48 48 H 0.96695 * 114.00127 * 270.02544 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 1.2303 5 6 2.1599 -0.0085 2.4157 6 6 2.6205 -0.6597 3.5460 7 6 2.9437 -2.0180 3.4451 8 6 3.4399 -2.7609 4.6192 9 8 3.7450 -3.9331 4.5124 10 7 3.5550 -2.1404 5.8101 11 6 4.1319 -2.7280 7.0329 12 6 4.6009 -1.5105 7.8719 13 6 3.4756 -0.4827 7.5809 14 1 3.8442 0.5364 7.6988 15 7 2.3193 -0.7207 8.4483 16 6 2.2226 -0.0767 9.6528 17 1 2.9988 0.6072 9.9632 18 6 1.1267 -0.3018 10.4744 19 7 0.1806 -1.1349 10.0959 20 14 0.9946 0.5774 12.1173 21 1 2.1786 1.4535 12.3064 22 1 -0.2398 1.4025 12.1392 23 1 0.9398 -0.4247 13.2119 24 6 3.1202 -0.7676 6.1065 25 1 3.6401 -0.0653 5.4550 26 6 1.6087 -0.6450 5.9025 27 6 2.7866 -2.6602 2.2079 28 8 3.0928 -3.9739 2.0879 29 7 2.3423 -1.9904 1.1579 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.1301 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 1.9057 1.0404 2.4573 38 1 2.7288 -0.1331 4.4827 39 1 3.3752 -3.2958 7.5744 40 1 4.9798 -3.3658 6.7837 41 1 5.5663 -1.1415 7.5253 42 1 4.6381 -1.7593 8.9325 43 1 1.6220 -1.3347 8.1693 44 1 -0.5851 -1.2925 10.6701 45 1 1.0905 -1.2044 6.6815 46 1 1.3190 0.4045 5.9550 47 1 1.3401 -1.0477 4.9260 48 1 4.0114 -4.1424 1.8374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987145771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:23 Heat of formation + Delta-G solvation = 17.837788 kcal Electronic energy + Delta-G solvation = -29794.457607 eV Core-core repulsion = 25851.921950 eV Total energy + Delta-G solvation = -3942.535657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30411 -39.66903 -37.99603 -37.08963 -35.40955 -34.08740 -33.33170 -31.52565 -30.79339 -29.79806 -28.80622 -27.46371 -25.71603 -24.79077 -23.83603 -23.31501 -22.45688 -20.94229 -19.95682 -19.44976 -18.29364 -17.72836 -17.11824 -16.88565 -16.12017 -15.75000 -15.36332 -15.22339 -14.71844 -14.52756 -14.40180 -13.89644 -13.86014 -13.45896 -13.28004 -13.11630 -12.94179 -12.63622 -12.50401 -12.30163 -12.11763 -11.86358 -11.73988 -11.56704 -11.39833 -11.30002 -11.18320 -11.12362 -11.06124 -10.84221 -10.72257 -10.50195 -10.10759 -9.96265 -9.79425 -9.57578 -9.31518 -9.04260 -8.94637 -8.37038 -7.12679 -5.89884 -3.20601 0.52055 1.04039 2.89086 3.10180 3.35547 3.41174 3.41508 3.44043 3.71641 4.22021 4.41038 4.48140 4.55677 4.76197 4.77019 4.87743 4.90002 4.96585 5.13667 5.20767 5.29035 5.35625 5.37719 5.41315 5.50305 5.52673 5.54218 5.58069 5.67845 5.70062 5.74832 5.89144 5.92482 5.95634 5.99774 6.04411 6.12900 6.21889 6.30984 6.37440 6.49502 6.59473 6.69106 6.83033 7.47489 7.59264 7.70292 7.79474 8.27660 8.33446 9.39545 9.92630 10.26891 11.32063 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.003253 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.133817 B = 8604.308370 C = 9759.533956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C -0.148 4.148 4 C 0.180 3.820 5 C -0.198 4.198 6 C -0.056 4.056 7 C -0.208 4.208 8 C 0.577 3.423 9 O -0.531 6.531 10 N -0.602 5.602 11 C 0.115 3.885 12 C -0.160 4.160 13 C 0.175 3.825 14 H 0.074 0.926 15 N -0.713 5.713 16 C -0.247 4.247 17 H 0.073 0.927 18 C -0.008 4.008 19 N -0.929 5.929 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.103 3.897 25 H 0.083 0.917 26 C -0.178 4.178 27 C 0.371 3.629 28 O -0.460 6.460 29 N -0.513 5.513 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.145 0.855 38 H 0.188 0.812 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.388 0.612 44 H 0.257 0.743 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.057 0.943 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 5.324 -18.679 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 C -0.206 4.206 4 C 0.042 3.958 5 C -0.218 4.218 6 C -0.081 4.081 7 C -0.215 4.215 8 C 0.365 3.635 9 O -0.409 6.409 10 N -0.335 5.335 11 C -0.007 4.007 12 C -0.202 4.202 13 C 0.062 3.938 14 H 0.091 0.909 15 N -0.356 5.356 16 C -0.378 4.378 17 H 0.091 0.909 18 C -0.205 4.205 19 N -0.576 5.576 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.001 4.001 25 H 0.100 0.900 26 C -0.236 4.236 27 C 0.191 3.809 28 O -0.267 6.267 29 N -0.233 5.233 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.162 0.838 38 H 0.205 0.795 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.226 0.774 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.794 4.146 -19.226 20.504 hybrid contribution 0.091 0.534 1.538 1.630 sum 5.886 4.680 -17.689 19.221 Atomic orbital electron populations 1.21814 0.93216 1.02607 1.02404 1.20140 0.96497 0.95481 0.94765 1.21941 1.01415 0.94590 1.02626 1.21191 0.91407 0.88259 0.94969 1.21974 1.04780 1.02265 0.92801 1.23651 0.89874 0.93357 1.01188 1.21050 1.09243 0.95266 0.95918 1.17442 0.78573 0.85966 0.81502 1.90782 1.50618 1.15042 1.84460 1.48476 1.60148 1.15127 1.09765 1.22239 0.97804 0.96547 0.84066 1.23596 0.98856 0.96856 1.00851 1.21164 0.88898 0.97046 0.86660 0.90857 1.42646 1.21326 1.52897 1.18748 1.19265 1.04451 1.19769 0.94342 0.90869 1.24759 0.97058 0.99686 0.98949 1.69663 1.11267 1.38737 1.37924 0.86121 0.77408 0.78781 0.83833 1.20481 1.21833 1.21838 1.22491 0.95646 0.82954 0.99055 0.89952 1.22653 0.94882 1.03777 1.02252 1.19117 0.90823 0.84114 0.86851 1.84723 1.34140 1.16982 1.90874 1.67073 1.15022 1.08967 1.32188 0.92182 0.92141 0.91676 0.89087 0.92252 0.91666 0.91778 0.83762 0.79535 0.91035 0.91340 0.91952 0.89225 0.77406 0.93351 0.89445 0.90632 0.92458 0.73858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.18 37.16 0.34 -0.79 16 2 C -0.05 -0.42 3.23 -91.77 -0.30 -0.72 16 3 C -0.15 -0.93 8.61 37.16 0.32 -0.61 16 4 C 0.18 2.06 5.79 -82.53 -0.48 1.58 16 5 C -0.20 -2.11 9.15 -39.50 -0.36 -2.47 16 6 C -0.06 -0.70 6.52 -38.89 -0.25 -0.95 16 7 C -0.21 -3.12 5.45 -104.69 -0.57 -3.69 16 8 C 0.58 9.94 7.59 -12.47 -0.09 9.84 16 9 O -0.53 -10.51 15.49 -16.48 -0.26 -10.76 16 10 N -0.60 -9.75 3.06 -165.13 -0.51 -10.26 16 11 C 0.12 1.91 6.87 -2.41 -0.02 1.89 16 12 C -0.16 -2.52 6.78 -24.46 -0.17 -2.69 16 13 C 0.17 2.98 3.48 -66.10 -0.23 2.76 16 14 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 15 N -0.71 -15.82 4.54 -51.65 -0.23 -16.05 16 16 C -0.25 -6.23 9.96 -15.06 -0.15 -6.38 16 17 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 19 N -0.93 -26.54 13.06 55.49 0.72 -25.82 16 20 Si 0.91 21.18 29.55 -169.99 -5.02 16.15 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.10 1.52 2.67 -66.95 -0.18 1.34 16 25 H 0.08 1.00 6.05 -51.93 -0.31 0.68 16 26 C -0.18 -2.77 7.49 37.16 0.28 -2.49 16 27 C 0.37 5.60 7.77 -16.61 -0.13 5.47 16 28 O -0.46 -6.90 11.66 -39.74 -0.46 -7.37 16 29 N -0.51 -7.18 10.28 -9.21 -0.09 -7.27 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.37 6.47 -51.93 -0.34 0.03 16 37 H 0.14 1.13 6.27 -52.48 -0.33 0.80 16 38 H 0.19 2.17 2.16 -53.89 -0.12 2.06 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.39 9.40 5.49 -40.82 -0.22 9.18 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.09 1.69 5.60 -51.93 -0.29 1.40 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 0.85 4.65 -51.93 -0.24 0.61 16 48 H 0.40 4.24 9.06 45.56 0.41 4.65 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -31.96 374.50 -8.34 -40.31 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -6.05 Total: 13.65 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.08 Total: 1.79 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.11 Total: -59.40 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.72 Total: -18.13 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.96 -8.34 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987145771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.144 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds