Wall clock time and date at job start Tue Mar 31 2020 17:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47278 * 2 1 4 4 C 1.50699 * 109.47628 * 120.00617 * 2 1 3 5 5 C 1.38356 * 119.40322 * 275.00203 * 4 2 1 6 6 C 1.38342 * 119.45744 * 179.97438 * 5 4 2 7 7 C 1.39979 * 118.34714 * 0.02562 * 6 5 4 8 8 C 1.47534 * 120.59461 * 179.97438 * 7 6 5 9 9 O 1.21590 * 119.99788 * 181.59807 * 8 7 6 10 10 N 1.34777 * 120.00155 * 1.60160 * 8 7 6 11 11 C 1.47419 * 125.64730 * 185.05758 * 10 8 7 12 12 C 1.55131 * 104.72072 * 155.81977 * 11 10 8 13 13 C 1.55158 * 101.48890 * 37.29208 * 12 11 10 14 14 H 1.09005 * 110.71651 * 205.97398 * 13 12 11 15 15 N 1.46493 * 110.72034 * 82.70019 * 13 12 11 16 16 C 1.36937 * 120.00555 * 91.47564 * 15 13 12 17 17 H 1.08000 * 119.99106 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00541 * 179.97438 * 16 15 13 19 19 N 1.31623 * 120.00002 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46864 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46990 * 119.99919 * 20 18 16 23 23 H 1.48500 * 109.46788 * 240.00295 * 20 18 16 24 24 C 1.47027 * 125.64483 * 5.36217 * 10 8 7 25 25 H 1.08997 * 109.88138 * 300.59523 * 24 10 8 26 26 C 1.53003 * 109.88035 * 61.60682 * 24 10 8 27 27 C 1.40283 * 118.80915 * 359.93359 * 7 6 5 28 28 O 1.35428 * 119.79896 * 180.02562 * 27 7 6 29 29 N 1.31882 * 119.41029 * 94.97163 * 4 2 1 30 30 H 1.08997 * 109.47263 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46679 * 299.99544 * 1 2 3 32 32 H 1.08992 * 109.47011 * 59.99587 * 1 2 3 33 33 H 1.09004 * 109.46679 * 240.00456 * 2 1 3 34 34 H 1.09004 * 109.47150 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46943 * 300.00455 * 3 2 1 36 36 H 1.08994 * 109.46796 * 60.00409 * 3 2 1 37 37 H 1.08004 * 120.27097 * 359.71871 * 5 4 2 38 38 H 1.08004 * 120.82580 * 179.97438 * 6 5 4 39 39 H 1.09000 * 110.36850 * 274.74018 * 11 10 8 40 40 H 1.08992 * 110.37027 * 37.06720 * 11 10 8 41 41 H 1.09005 * 111.18945 * 279.18962 * 12 11 10 42 42 H 1.08998 * 110.94033 * 155.28723 * 12 11 10 43 43 H 0.97006 * 119.99843 * 271.48075 * 15 13 12 44 44 H 0.96993 * 120.00332 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.46756 * 69.68261 * 26 24 10 46 46 H 1.09000 * 109.46571 * 189.67485 * 26 24 10 47 47 H 1.08990 * 109.47186 * 309.67561 * 26 24 10 48 48 H 0.96695 * 114.00127 * 270.02544 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 1.2303 5 6 2.1599 -0.0085 2.4157 6 6 2.6205 -0.6597 3.5460 7 6 2.9437 -2.0180 3.4451 8 6 3.4399 -2.7609 4.6192 9 8 3.7450 -3.9331 4.5124 10 7 3.5550 -2.1404 5.8101 11 6 4.1319 -2.7280 7.0329 12 6 4.6009 -1.5105 7.8719 13 6 3.4756 -0.4827 7.5809 14 1 3.8442 0.5364 7.6988 15 7 2.3193 -0.7207 8.4483 16 6 2.2226 -0.0767 9.6528 17 1 2.9988 0.6072 9.9632 18 6 1.1267 -0.3018 10.4744 19 7 0.1806 -1.1349 10.0959 20 14 0.9946 0.5774 12.1173 21 1 2.1786 1.4535 12.3064 22 1 -0.2398 1.4025 12.1392 23 1 0.9398 -0.4247 13.2119 24 6 3.1202 -0.7676 6.1065 25 1 3.6401 -0.0653 5.4550 26 6 1.6087 -0.6450 5.9025 27 6 2.7866 -2.6602 2.2079 28 8 3.0928 -3.9739 2.0879 29 7 2.3423 -1.9904 1.1579 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.1301 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 1.9057 1.0404 2.4573 38 1 2.7288 -0.1331 4.4827 39 1 3.3752 -3.2958 7.5744 40 1 4.9798 -3.3658 6.7837 41 1 5.5663 -1.1415 7.5253 42 1 4.6381 -1.7593 8.9325 43 1 1.6220 -1.3347 8.1693 44 1 -0.5851 -1.2925 10.6701 45 1 1.0905 -1.2044 6.6815 46 1 1.3190 0.4045 5.9550 47 1 1.3401 -1.0477 4.9260 48 1 4.0114 -4.1424 1.8374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987145771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:22 Heat of formation + Delta-G solvation = -4.696122 kcal Electronic energy + Delta-G solvation = -29795.434750 eV Core-core repulsion = 25851.921950 eV Total energy + Delta-G solvation = -3943.512800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.41739 -40.84800 -39.20534 -38.28044 -36.32434 -35.67337 -34.46539 -33.20136 -31.94605 -31.00688 -30.22712 -27.99942 -27.07149 -25.84877 -25.58107 -24.42578 -23.61621 -21.80634 -21.33362 -20.66391 -19.47377 -19.27118 -18.34474 -18.07473 -17.21334 -17.10825 -16.47179 -16.42103 -16.26411 -15.85198 -15.36673 -15.08710 -14.87498 -14.73581 -14.65773 -14.30037 -14.04440 -13.90213 -13.53280 -13.35482 -13.06722 -12.96287 -12.84091 -12.82463 -12.74520 -12.53531 -12.40270 -12.33588 -12.25217 -12.04528 -11.97787 -11.80851 -11.70965 -11.49108 -11.19373 -10.92035 -10.69534 -10.39882 -9.98783 -9.65160 -8.98434 -7.90552 -5.18748 -0.51255 0.06797 1.51087 1.52708 1.61358 1.69529 1.85980 2.41958 2.59191 2.67417 3.21558 3.39656 3.47178 3.51152 3.74705 3.83526 3.88483 3.92237 4.06607 4.14654 4.18050 4.23389 4.28126 4.30308 4.44781 4.52748 4.62040 4.62763 4.74347 4.82484 4.86311 4.90098 4.93026 4.96493 5.05279 5.06220 5.17466 5.22522 5.27501 5.34055 5.37579 5.45267 5.46181 5.47784 5.60626 6.30597 6.41971 6.52007 6.80691 7.01832 7.38425 8.11989 8.33693 9.32812 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.003253 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.133817 B = 8604.308370 C = 9759.533956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C -0.145 4.145 4 C 0.178 3.822 5 C -0.186 4.186 6 C -0.052 4.052 7 C -0.227 4.227 8 C 0.572 3.428 9 O -0.567 6.567 10 N -0.601 5.601 11 C 0.115 3.885 12 C -0.146 4.146 13 C 0.165 3.835 14 H 0.095 0.905 15 N -0.725 5.725 16 C -0.230 4.230 17 H 0.086 0.914 18 C -0.074 4.074 19 N -0.971 5.971 20 Si 0.967 3.033 21 H -0.261 1.261 22 H -0.298 1.298 23 H -0.304 1.304 24 C 0.109 3.891 25 H 0.127 0.873 26 C -0.170 4.170 27 C 0.356 3.644 28 O -0.480 6.480 29 N -0.531 5.531 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.182 0.818 38 H 0.197 0.803 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.375 0.625 44 H 0.247 0.753 45 H 0.045 0.955 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.495 8.673 -20.144 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.202 4.202 4 C 0.040 3.960 5 C -0.205 4.205 6 C -0.076 4.076 7 C -0.234 4.234 8 C 0.363 3.637 9 O -0.448 6.448 10 N -0.334 5.334 11 C -0.007 4.007 12 C -0.187 4.187 13 C 0.055 3.945 14 H 0.113 0.887 15 N -0.367 5.367 16 C -0.362 4.362 17 H 0.104 0.896 18 C -0.266 4.266 19 N -0.622 5.622 20 Si 0.797 3.203 21 H -0.185 1.185 22 H -0.226 1.226 23 H -0.232 1.232 24 C 0.006 3.994 25 H 0.144 0.856 26 C -0.228 4.228 27 C 0.177 3.823 28 O -0.289 6.289 29 N -0.251 5.251 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.199 0.801 38 H 0.213 0.787 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.211 0.789 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.111 0.889 47 H 0.082 0.918 48 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 7.067 7.538 -20.711 23.146 hybrid contribution -0.237 -0.505 1.845 1.927 sum 6.830 7.033 -18.866 21.262 Atomic orbital electron populations 1.21820 0.92704 1.01671 1.03699 1.20261 0.96754 0.96655 0.93110 1.21945 1.01432 0.92794 1.04035 1.21861 0.90018 0.87554 0.96616 1.22351 1.02915 1.03754 0.91527 1.23700 0.89626 0.92118 1.02134 1.20919 1.11195 0.96417 0.94863 1.17854 0.77959 0.85742 0.82185 1.90751 1.52303 1.16655 1.85106 1.48520 1.59854 1.15670 1.09310 1.22156 0.97116 0.97086 0.84385 1.23462 0.99884 0.95619 0.99687 1.21478 0.87555 0.98345 0.87148 0.88717 1.42839 1.22664 1.52379 1.18781 1.19693 1.03541 1.18176 0.94760 0.89627 1.25471 0.97587 1.01342 1.02236 1.69826 1.12053 1.41315 1.38986 0.85164 0.77509 0.77528 0.80082 1.18495 1.22609 1.23167 1.22574 0.95539 0.82986 0.98259 0.85629 1.22574 0.95074 1.04109 1.01007 1.19277 0.91520 0.84176 0.87371 1.84667 1.35489 1.17663 1.91084 1.67141 1.15662 1.10307 1.31953 0.94239 0.91696 0.89573 0.89519 0.92241 0.90058 0.90643 0.80106 0.78666 0.94285 0.90655 0.88453 0.90956 0.78908 0.94393 0.93660 0.88942 0.91788 0.72333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.18 71.98 0.66 -1.22 16 2 C -0.05 -0.69 3.23 -11.54 -0.04 -0.73 16 3 C -0.14 -1.23 8.61 71.98 0.62 -0.61 16 4 C 0.18 3.66 5.79 42.58 0.25 3.91 16 5 C -0.19 -3.30 9.15 22.32 0.20 -3.09 16 6 C -0.05 -1.14 6.52 22.72 0.15 -0.99 16 7 C -0.23 -6.62 5.45 -19.91 -0.11 -6.73 16 8 C 0.57 19.73 7.59 86.70 0.66 20.39 16 9 O -0.57 -23.11 15.49 16.81 0.26 -22.85 16 10 N -0.60 -19.04 3.06 -794.62 -2.43 -21.48 16 11 C 0.11 3.81 6.87 86.93 0.60 4.41 16 12 C -0.15 -4.32 6.78 32.06 0.22 -4.10 16 13 C 0.16 5.27 3.48 46.18 0.16 5.43 16 14 H 0.10 2.70 8.09 -2.38 -0.02 2.68 16 15 N -0.73 -31.89 4.54 -317.34 -1.44 -33.33 16 16 C -0.23 -11.38 9.96 84.03 0.84 -10.54 16 17 H 0.09 3.96 7.83 -2.91 -0.02 3.94 16 18 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 19 N -0.97 -57.15 13.06 21.65 0.28 -56.87 16 20 Si 0.97 43.77 29.55 68.60 2.03 45.80 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 22 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 24 C 0.11 2.98 2.67 45.34 0.12 3.10 16 25 H 0.13 2.45 6.05 -2.39 -0.01 2.44 16 26 C -0.17 -5.06 7.49 71.98 0.54 -4.52 16 27 C 0.36 10.73 7.77 85.13 0.66 11.40 16 28 O -0.48 -14.86 11.66 -66.43 -0.77 -15.64 16 29 N -0.53 -14.42 10.28 -296.06 -3.04 -17.46 16 30 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.07 0.48 6.47 -2.39 -0.02 0.47 16 37 H 0.18 1.85 6.27 -2.91 -0.02 1.84 16 38 H 0.20 3.81 2.16 -4.23 -0.01 3.80 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 2.38 8.09 -2.39 -0.02 2.36 16 41 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.38 18.64 5.49 -92.70 -0.51 18.13 16 44 H 0.25 14.36 8.31 -92.71 -0.77 13.58 16 45 H 0.04 1.78 5.60 -2.38 -0.01 1.76 16 46 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.06 1.82 4.65 -2.39 -0.01 1.81 16 48 H 0.42 9.24 9.06 -74.06 -0.67 8.57 16 Total: -1.00 -72.17 374.50 0.70 -71.46 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -0.17 Total: 37.79 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 5.99 Total: 12.56 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -6.63 Total: -129.13 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.51 Total: -38.49 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.17 0.70 -71.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987145771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.766 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds