Wall clock time and date at job start Tue Mar 31 2020 17:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47318 * 2 1 4 4 O 1.42902 * 109.47013 * 120.00280 * 2 1 3 5 5 C 1.35665 * 116.99880 * 89.99931 * 4 2 1 6 6 C 1.39287 * 119.61487 * 180.02562 * 5 4 2 7 7 C 1.38333 * 119.30897 * 179.97438 * 6 5 4 8 8 C 1.38784 * 118.55523 * 359.97438 * 7 6 5 9 9 C 1.39127 * 119.19147 * 0.02562 * 8 7 6 10 10 C 1.48143 * 119.69110 * 179.97438 * 9 8 7 11 11 O 1.21516 * 120.00134 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99729 * 180.02562 * 10 9 8 13 13 C 1.47421 * 125.65022 * 359.97015 * 12 10 9 14 14 C 1.54907 * 104.83266 * 155.90930 * 13 12 10 15 15 C 1.55157 * 101.58315 * 37.01069 * 14 13 12 16 16 H 1.09006 * 110.72092 * 83.03177 * 15 14 13 17 17 N 1.46496 * 110.72451 * 206.13777 * 15 14 13 18 18 C 1.36945 * 119.99718 * 273.54503 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.47022 * 125.64548 * 180.02562 * 12 10 9 27 27 H 1.08993 * 109.88613 * 61.60307 * 26 12 10 28 28 C 1.53005 * 109.88002 * 300.43215 * 26 12 10 29 29 N 1.31899 * 119.62125 * 0.25003 * 5 4 2 30 30 H 1.08999 * 109.46883 * 300.00242 * 1 2 3 31 31 H 1.09005 * 109.46866 * 59.99540 * 1 2 3 32 32 H 1.08993 * 109.47371 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46921 * 239.99979 * 2 1 3 34 34 H 1.09004 * 109.47227 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46950 * 299.99838 * 3 2 1 36 36 H 1.08999 * 109.47341 * 60.00038 * 3 2 1 37 37 H 1.08001 * 120.34721 * 359.97160 * 6 5 4 38 38 H 1.07994 * 120.72320 * 180.02562 * 7 6 5 39 39 H 1.07998 * 120.40571 * 180.02562 * 8 7 6 40 40 H 1.09004 * 110.36554 * 37.07463 * 13 12 10 41 41 H 1.08999 * 110.37121 * 274.74666 * 13 12 10 42 42 H 1.08999 * 111.00650 * 278.93793 * 14 13 12 43 43 H 1.08997 * 111.03886 * 155.09668 * 14 13 12 44 44 H 0.96996 * 120.00499 * 93.54234 * 17 15 14 45 45 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 46 46 H 1.08991 * 109.47376 * 302.19604 * 28 26 12 47 47 H 1.09004 * 109.46838 * 62.19960 * 28 26 12 48 48 H 1.08997 * 109.47235 * 182.18963 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2116 -2.0109 1.0652 6 6 2.6748 -2.7220 2.1696 7 6 2.8814 -4.0854 2.0591 8 6 2.6172 -4.7000 0.8432 9 6 2.1562 -3.9303 -0.2202 10 6 1.8713 -4.5749 -1.5233 11 8 2.0408 -5.7704 -1.6597 12 7 1.4249 -3.8351 -2.5577 13 6 1.1768 -2.3821 -2.5310 14 6 1.2944 -1.9326 -4.0088 15 6 0.6589 -3.1370 -4.7523 16 1 -0.4277 -3.0514 -4.7669 17 7 1.1871 -3.2425 -6.1147 18 6 0.6061 -2.5322 -7.1312 19 1 -0.2417 -1.8945 -6.9285 20 6 1.1068 -2.6317 -8.4219 21 7 2.1398 -3.4092 -8.6690 22 14 0.3139 -1.6633 -9.8086 23 1 -0.7617 -2.4777 -10.4292 24 1 -0.2657 -0.4078 -9.2672 25 1 1.3387 -1.3345 -10.8318 26 6 1.1037 -4.3437 -3.8992 27 1 0.2947 -5.0713 -3.8359 28 6 2.3428 -4.9914 -4.5205 29 7 1.9744 -2.6218 -0.0795 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.8708 -2.2143 3.1025 38 1 3.2397 -4.6591 2.9010 39 1 2.7677 -5.7628 0.7238 40 1 1.9279 -1.8802 -1.9210 41 1 0.1769 -2.1748 -2.1500 42 1 2.3379 -1.8027 -4.2959 43 1 0.7260 -1.0197 -4.1865 44 1 1.9483 -3.8154 -6.2968 45 1 2.4894 -3.4790 -9.5711 46 1 3.1519 -4.2623 -4.5618 47 1 2.6511 -5.8424 -3.9131 48 1 2.1080 -5.3313 -5.5292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987285539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:34 Heat of formation + Delta-G solvation = -23.320663 kcal Electronic energy + Delta-G solvation = -29807.844089 eV Core-core repulsion = 25863.523669 eV Total energy + Delta-G solvation = -3944.320421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11887 -40.96408 -39.45427 -38.56018 -35.99730 -34.35524 -33.92267 -33.10749 -32.13804 -31.43070 -30.44110 -28.13283 -26.83320 -26.28543 -25.31507 -24.46551 -23.60828 -22.17073 -21.64837 -20.37227 -19.44797 -18.98242 -18.68037 -17.18637 -17.10985 -16.93663 -16.79818 -16.65903 -16.27739 -15.86421 -15.49315 -15.42419 -14.89133 -14.78999 -14.55833 -14.36681 -14.00062 -13.95560 -13.65510 -13.34159 -13.18471 -13.15475 -13.11200 -13.02452 -12.90000 -12.87551 -12.80795 -12.58402 -12.10087 -12.06066 -11.85733 -11.77472 -11.61943 -11.49641 -11.30732 -10.98797 -10.91486 -10.44513 -9.81939 -9.49781 -9.00694 -7.92887 -5.22234 -0.41222 0.24955 1.49910 1.51398 1.59559 1.64620 1.78376 2.00542 2.58015 2.77282 2.87705 3.38417 3.54991 3.74267 3.83670 3.89895 3.92573 3.98655 4.01620 4.06632 4.16021 4.21800 4.27813 4.36700 4.40319 4.47969 4.55237 4.64139 4.74642 4.82524 4.86697 4.87992 4.90168 4.93731 4.98449 5.08825 5.11722 5.17116 5.23757 5.27147 5.29466 5.33961 5.41474 5.46362 5.55250 6.19889 6.28493 6.42550 6.58246 7.00158 7.35889 8.08321 8.33032 9.30826 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.003374 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.174816 B = 8296.411849 C = 9895.717183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.304 6.304 5 C 0.305 3.695 6 C -0.159 4.159 7 C -0.033 4.033 8 C -0.151 4.151 9 C 0.100 3.900 10 C 0.574 3.426 11 O -0.565 6.565 12 N -0.589 5.589 13 C 0.114 3.886 14 C -0.147 4.147 15 C 0.168 3.832 16 H 0.068 0.932 17 N -0.731 5.731 18 C -0.239 4.239 19 H 0.082 0.918 20 C -0.074 4.074 21 N -0.971 5.971 22 Si 0.973 3.027 23 H -0.290 1.290 24 H -0.266 1.266 25 H -0.299 1.299 26 C 0.132 3.868 27 H 0.071 0.929 28 C -0.143 4.143 29 N -0.522 5.522 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.175 0.825 38 H 0.191 0.809 39 H 0.151 0.849 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.381 0.619 45 H 0.250 0.750 46 H 0.045 0.955 47 H 0.060 0.940 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 6.418 26.476 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.212 6.212 5 C 0.123 3.877 6 C -0.180 4.180 7 C -0.057 4.057 8 C -0.172 4.172 9 C -0.035 4.035 10 C 0.362 3.638 11 O -0.445 6.445 12 N -0.320 5.320 13 C -0.008 4.008 14 C -0.188 4.188 15 C 0.058 3.942 16 H 0.086 0.914 17 N -0.374 5.374 18 C -0.370 4.370 19 H 0.099 0.901 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.217 1.217 24 H -0.190 1.190 25 H -0.226 1.226 26 C 0.028 3.972 27 H 0.089 0.911 28 C -0.202 4.202 29 N -0.249 5.249 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.192 0.808 38 H 0.208 0.792 39 H 0.168 0.832 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.217 0.783 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.708 6.534 25.826 26.649 hybrid contribution 0.222 -0.465 -1.025 1.147 sum -0.486 6.068 24.802 25.538 Atomic orbital electron populations 1.22203 0.94102 1.02232 1.03706 1.22677 0.95107 0.93711 0.87107 1.21913 1.01813 0.92644 1.04066 1.86305 1.80272 1.15331 1.39272 1.20226 0.92299 0.85297 0.89864 1.21719 1.02371 0.94649 0.99253 1.21867 0.93203 0.93337 0.97321 1.22139 0.99813 1.02386 0.92910 1.20506 1.00052 0.88976 0.93984 1.18000 0.77242 0.85453 0.83097 1.90739 1.54919 1.15251 1.83580 1.48443 1.62756 1.10670 1.10137 1.22779 1.02675 0.78691 0.96647 1.23439 1.01312 0.99990 0.94011 1.21353 0.96851 0.91908 0.84109 0.91433 1.42846 1.37476 1.54316 1.02777 1.19651 1.10305 1.18985 0.88104 0.90062 1.25547 0.99319 1.01833 0.99958 1.69827 1.27924 1.44049 1.20346 0.85144 0.76939 0.78614 0.79071 1.21695 1.19039 1.22618 1.21683 0.97123 0.96642 0.81753 0.91107 1.21820 0.97357 1.00431 1.00568 1.67301 1.21407 1.10810 1.25350 0.91283 0.89684 0.93457 0.90209 0.92118 0.89096 0.90905 0.80798 0.79211 0.83166 0.87544 0.90494 0.92765 0.89275 0.78301 0.94096 0.93547 0.92148 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 9.53 71.98 0.69 -1.96 16 2 C 0.07 1.23 3.11 30.59 0.10 1.33 16 3 C -0.15 -2.00 9.56 71.98 0.69 -1.31 16 4 O -0.30 -5.93 9.76 -89.82 -0.88 -6.80 16 5 C 0.30 6.22 7.46 84.94 0.63 6.86 16 6 C -0.16 -2.27 10.05 22.54 0.23 -2.04 16 7 C -0.03 -0.42 10.16 22.42 0.23 -0.19 16 8 C -0.15 -3.08 9.63 22.61 0.22 -2.87 16 9 C 0.10 2.67 6.72 41.83 0.28 2.96 16 10 C 0.57 19.14 7.62 86.87 0.66 19.81 16 11 O -0.57 -21.64 15.22 -3.76 -0.06 -21.70 16 12 N -0.59 -19.52 3.08 -791.08 -2.44 -21.96 16 13 C 0.11 3.24 5.80 86.86 0.50 3.75 16 14 C -0.15 -4.88 6.77 31.99 0.22 -4.67 16 15 C 0.17 6.57 3.46 46.18 0.16 6.73 16 16 H 0.07 2.59 8.12 -2.38 -0.02 2.57 16 17 N -0.73 -36.17 5.02 -317.32 -1.59 -37.76 16 18 C -0.24 -12.85 9.98 84.03 0.84 -12.01 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 20 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 21 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 22 Si 0.97 45.38 29.55 68.60 2.03 47.41 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 26 C 0.13 4.92 3.48 45.34 0.16 5.07 16 27 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 28 C -0.14 -5.75 7.95 71.98 0.57 -5.18 16 29 N -0.52 -12.67 5.36 -298.21 -1.60 -14.27 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.65 4.80 -2.38 -0.01 1.64 16 34 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.15 3.02 7.63 -2.91 -0.02 3.00 16 40 H 0.11 2.89 3.78 -2.38 -0.01 2.88 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.38 20.29 4.92 -92.71 -0.46 19.84 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 47 H 0.06 2.39 6.76 -2.38 -0.02 2.37 16 48 H 0.06 2.70 6.67 -2.39 -0.02 2.69 16 Total: -1.00 -69.04 383.59 2.90 -66.14 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.52 Total: 35.17 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 6.63 Total: 12.55 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -5.34 Total: -132.77 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.93 Total: -28.50 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.04 2.90 -66.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987285539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.817 kcal (2) G-P(sol) polarization free energy of solvation -69.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds