Wall clock time and date at job start Tue Mar 31 2020 17:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47075 * 2 1 4 4 O 1.42895 * 109.47476 * 119.99891 * 2 1 3 5 5 C 1.35668 * 117.00402 * 149.99680 * 4 2 1 6 6 C 1.39282 * 119.62002 * 179.97438 * 5 4 2 7 7 C 1.38329 * 119.30554 * 180.02562 * 6 5 4 8 8 C 1.38779 * 118.56247 * 0.02562 * 7 6 5 9 9 C 1.39137 * 119.18513 * 0.02562 * 8 7 6 10 10 C 1.48151 * 119.68819 * 179.97438 * 9 8 7 11 11 O 1.21515 * 120.00237 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00017 * 179.97438 * 10 9 8 13 13 C 1.47428 * 125.64702 * 359.69461 * 12 10 9 14 14 C 1.54687 * 104.94140 * 204.07060 * 13 12 10 15 15 C 1.55150 * 101.67938 * 323.27562 * 14 13 12 16 16 H 1.09002 * 110.72332 * 276.97492 * 15 14 13 17 17 N 1.46506 * 110.72209 * 153.69787 * 15 14 13 18 18 C 1.36940 * 119.99555 * 91.48120 * 17 15 14 19 19 H 1.07991 * 120.00210 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99445 * 180.02562 * 18 17 15 21 21 N 1.31627 * 120.00387 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99996 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47022 * 59.99702 * 22 20 18 24 24 H 1.48499 * 109.47203 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46678 * 299.99659 * 22 20 18 26 26 C 1.47023 * 125.65277 * 179.97438 * 12 10 9 27 27 H 1.09002 * 109.87401 * 59.49069 * 26 12 10 28 28 C 1.52993 * 109.88406 * 298.32725 * 26 12 10 29 29 N 1.31904 * 119.61367 * 0.02562 * 5 4 2 30 30 H 1.08998 * 109.46920 * 300.00141 * 1 2 3 31 31 H 1.09003 * 109.47192 * 59.99671 * 1 2 3 32 32 H 1.08999 * 109.47144 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47388 * 240.00429 * 2 1 3 34 34 H 1.08994 * 109.47384 * 299.99914 * 3 2 1 35 35 H 1.09002 * 109.46662 * 59.99985 * 3 2 1 36 36 H 1.09000 * 109.47325 * 179.97438 * 3 2 1 37 37 H 1.08004 * 120.34926 * 0.02562 * 6 5 4 38 38 H 1.07998 * 120.71994 * 179.97438 * 7 6 5 39 39 H 1.07995 * 120.41353 * 180.02562 * 8 7 6 40 40 H 1.09006 * 110.36854 * 323.00461 * 13 12 10 41 41 H 1.09001 * 110.36793 * 85.32027 * 13 12 10 42 42 H 1.09009 * 111.09840 * 205.10724 * 14 13 12 43 43 H 1.08996 * 110.84649 * 81.33805 * 14 13 12 44 44 H 0.96999 * 119.99826 * 271.47726 * 17 15 14 45 45 H 0.96992 * 119.99965 * 179.97438 * 21 20 18 46 46 H 1.09010 * 109.47135 * 61.44847 * 28 26 12 47 47 H 1.08994 * 109.47157 * 181.45057 * 28 26 12 48 48 H 1.09002 * 109.47326 * 301.45671 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.1987 -1.3129 1.0652 6 6 3.7147 -1.9867 2.1696 7 6 4.9311 -2.6359 2.0591 8 6 5.5987 -2.5918 0.8432 9 6 5.0271 -1.8997 -0.2199 10 6 5.7304 -1.8450 -1.5227 11 8 6.8014 -2.4026 -1.6590 12 7 5.1822 -1.1768 -2.5569 13 6 3.8918 -0.4642 -2.5322 14 6 3.4319 -0.4208 -4.0085 15 6 4.7793 -0.2218 -4.7515 16 1 5.0615 0.8310 -4.7632 17 7 4.7036 -0.7548 -6.1140 18 6 4.3253 0.0598 -7.1478 19 1 4.0823 1.0948 -6.9586 20 6 4.2531 -0.4454 -8.4386 21 7 4.5487 -1.7071 -8.6692 22 14 3.7363 0.6655 -9.8487 23 1 4.6885 1.7995 -9.9600 24 1 3.7382 -0.1094 -11.1156 25 1 2.3707 1.1890 -9.5914 26 6 5.7692 -1.0425 -3.8981 27 1 5.9113 -2.0283 -4.3408 28 6 7.1100 -0.3110 -3.8084 29 7 3.8562 -1.2884 -0.0780 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4426 0.0005 37 1 3.1708 -2.0021 3.1026 38 1 5.3527 -3.1650 2.9010 39 1 6.5501 -3.0886 0.7235 40 1 3.1689 -1.0093 -1.9251 41 1 4.0243 0.5474 -2.1486 42 1 2.7602 0.4193 -4.1857 43 1 2.9622 -1.3613 -4.2963 44 1 4.9215 -1.6846 -6.2839 45 1 4.4978 -2.0602 -9.5711 46 1 7.7994 -0.8899 -3.1938 47 1 7.5267 -0.1923 -4.8085 48 1 6.9591 0.6705 -3.3589 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987285540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:37 Heat of formation + Delta-G solvation = -11.761310 kcal Electronic energy + Delta-G solvation = -29700.985900 eV Core-core repulsion = 25757.166730 eV Total energy + Delta-G solvation = -3943.819170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16707 -39.73659 -38.43421 -37.23548 -34.21631 -33.53367 -32.96268 -31.45985 -30.87940 -30.42279 -29.03017 -27.48562 -25.27565 -25.08552 -23.84998 -22.97504 -22.27640 -21.40547 -20.45926 -19.58253 -18.05831 -17.46609 -17.19240 -16.32439 -16.11033 -15.95702 -15.83005 -15.12819 -14.70850 -14.59499 -14.34004 -13.89700 -13.73183 -13.60081 -13.32262 -13.19650 -12.94747 -12.74885 -12.55426 -12.53218 -12.32375 -12.14625 -12.06321 -11.84416 -11.62387 -11.23206 -11.13785 -11.01027 -10.88261 -10.76267 -10.55182 -10.38101 -10.26015 -10.18621 -9.94175 -9.70477 -9.46655 -8.91351 -8.79802 -8.32597 -7.02719 -5.81398 -3.11796 0.48431 1.01961 2.73833 2.76253 3.03460 3.41306 3.45992 3.47076 3.71238 3.86554 4.50779 4.54860 4.64803 4.67771 4.74723 4.76733 4.93133 4.98866 5.14860 5.15953 5.29474 5.34870 5.43352 5.50495 5.54883 5.58610 5.62429 5.65263 5.70610 5.75670 5.84462 5.87591 5.92188 5.97279 6.09181 6.11489 6.13288 6.20843 6.37697 6.48236 6.62079 6.63102 6.72277 6.93764 7.03108 7.44350 7.65038 7.73246 8.26052 8.36014 9.47278 10.01846 10.36782 11.40712 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.003332 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.840098 B = 8402.364196 C = 9906.888733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 C -0.170 4.170 4 O -0.301 6.301 5 C 0.321 3.679 6 C -0.174 4.174 7 C -0.047 4.047 8 C -0.152 4.152 9 C 0.130 3.870 10 C 0.577 3.423 11 O -0.535 6.535 12 N -0.585 5.585 13 C 0.101 3.899 14 C -0.161 4.161 15 C 0.177 3.823 16 H 0.067 0.933 17 N -0.714 5.714 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.123 3.877 27 H 0.079 0.921 28 C -0.154 4.154 29 N -0.510 5.510 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.386 0.614 45 H 0.257 0.743 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 2.068 23.765 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.019 3.981 3 C -0.227 4.227 4 O -0.208 6.208 5 C 0.140 3.860 6 C -0.195 4.195 7 C -0.072 4.072 8 C -0.174 4.174 9 C -0.007 4.007 10 C 0.363 3.637 11 O -0.412 6.412 12 N -0.316 5.316 13 C -0.021 4.021 14 C -0.203 4.203 15 C 0.066 3.934 16 H 0.085 0.915 17 N -0.354 5.354 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.020 3.980 27 H 0.097 0.903 28 C -0.212 4.212 29 N -0.236 5.236 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.220 0.780 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.399 2.350 23.053 23.587 hybrid contribution -0.003 -0.054 -0.316 0.320 sum -4.401 2.296 22.738 23.273 Atomic orbital electron populations 1.21913 0.92702 1.03063 1.03115 1.22580 0.94665 0.92982 0.87918 1.22239 1.02183 0.95473 1.02802 1.86297 1.31306 1.64323 1.38918 1.19876 0.86329 0.90268 0.89533 1.21271 0.97831 1.01383 0.98983 1.21425 0.92863 0.95458 0.97487 1.21970 1.02314 1.00626 0.92445 1.20875 0.90235 0.94778 0.94766 1.17477 0.84604 0.79308 0.82280 1.90774 1.21364 1.46364 1.82727 1.48383 1.21995 1.50101 1.11138 1.22734 0.84810 0.96381 0.98204 1.23612 1.00797 1.02723 0.93146 1.21235 0.90707 0.96080 0.85428 0.91488 1.42338 1.80895 1.11556 1.00586 1.19165 1.38356 0.93242 0.86736 0.91052 1.24758 1.02146 0.96231 0.97460 1.69655 1.54624 1.12837 1.20653 0.86261 0.78398 0.79541 0.81912 1.21190 1.21691 1.21219 1.22055 0.94184 1.00577 0.81209 0.90254 1.22037 0.96747 0.99679 1.02721 1.67532 1.09277 1.22695 1.24137 0.91754 0.90145 0.91815 0.88697 0.90646 0.92098 0.91933 0.83830 0.83454 0.83202 0.88729 0.92088 0.90668 0.90886 0.77991 0.93326 0.91984 0.90986 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.56 37.16 0.36 -0.82 16 2 C 0.07 0.72 3.11 -26.73 -0.08 0.64 16 3 C -0.17 -1.51 9.53 37.16 0.35 -1.16 16 4 O -0.30 -3.26 9.76 -18.71 -0.18 -3.44 16 5 C 0.32 3.64 7.46 -17.13 -0.13 3.51 16 6 C -0.17 -1.56 10.05 -39.16 -0.39 -1.95 16 7 C -0.05 -0.39 10.16 -39.35 -0.40 -0.79 16 8 C -0.15 -1.70 9.63 -39.05 -0.38 -2.07 16 9 C 0.13 1.79 6.72 -83.02 -0.56 1.24 16 10 C 0.58 9.57 7.63 -12.19 -0.09 9.48 16 11 O -0.53 -10.07 15.36 5.35 0.08 -9.99 16 12 N -0.58 -9.64 3.07 -164.14 -0.50 -10.15 16 13 C 0.10 1.48 5.77 -2.65 -0.02 1.46 16 14 C -0.16 -2.71 6.76 -24.71 -0.17 -2.87 16 15 C 0.18 3.43 3.14 -66.10 -0.21 3.22 16 16 H 0.07 1.30 7.80 -51.93 -0.41 0.89 16 17 N -0.71 -17.32 5.22 -51.65 -0.27 -17.59 16 18 C -0.24 -6.53 9.96 -15.06 -0.15 -6.68 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 22 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.12 2.24 3.21 -66.95 -0.21 2.02 16 27 H 0.08 1.61 7.72 -51.93 -0.40 1.21 16 28 C -0.15 -2.62 9.10 37.15 0.34 -2.28 16 29 N -0.51 -6.51 5.36 -9.87 -0.05 -6.56 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 1.04 4.81 -51.93 -0.25 0.79 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.15 1.60 7.63 -52.49 -0.40 1.20 16 40 H 0.09 1.31 3.82 -51.93 -0.20 1.12 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.39 10.13 7.56 -40.82 -0.31 9.82 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.06 1.08 6.88 -51.92 -0.36 0.72 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -31.10 388.02 -8.57 -39.68 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.36 Total: 9.64 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.83 Total: 2.58 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.10 Total: -61.17 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.10 Total: -13.43 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.10 -8.57 -39.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987285540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.915 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds