Wall clock time and date at job start Tue Mar 31 2020 17:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47075 * 2 1 4 4 O 1.42895 * 109.47476 * 119.99891 * 2 1 3 5 5 C 1.35668 * 117.00402 * 149.99680 * 4 2 1 6 6 C 1.39282 * 119.62002 * 179.97438 * 5 4 2 7 7 C 1.38329 * 119.30554 * 180.02562 * 6 5 4 8 8 C 1.38779 * 118.56247 * 0.02562 * 7 6 5 9 9 C 1.39137 * 119.18513 * 0.02562 * 8 7 6 10 10 C 1.48151 * 119.68819 * 179.97438 * 9 8 7 11 11 O 1.21515 * 120.00237 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00017 * 179.97438 * 10 9 8 13 13 C 1.47428 * 125.64702 * 359.69461 * 12 10 9 14 14 C 1.54687 * 104.94140 * 204.07060 * 13 12 10 15 15 C 1.55150 * 101.67938 * 323.27562 * 14 13 12 16 16 H 1.09002 * 110.72332 * 276.97492 * 15 14 13 17 17 N 1.46506 * 110.72209 * 153.69787 * 15 14 13 18 18 C 1.36940 * 119.99555 * 91.48120 * 17 15 14 19 19 H 1.07991 * 120.00210 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99445 * 180.02562 * 18 17 15 21 21 N 1.31627 * 120.00387 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99996 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47022 * 59.99702 * 22 20 18 24 24 H 1.48499 * 109.47203 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46678 * 299.99659 * 22 20 18 26 26 C 1.47023 * 125.65277 * 179.97438 * 12 10 9 27 27 H 1.09002 * 109.87401 * 59.49069 * 26 12 10 28 28 C 1.52993 * 109.88406 * 298.32725 * 26 12 10 29 29 N 1.31904 * 119.61367 * 0.02562 * 5 4 2 30 30 H 1.08998 * 109.46920 * 300.00141 * 1 2 3 31 31 H 1.09003 * 109.47192 * 59.99671 * 1 2 3 32 32 H 1.08999 * 109.47144 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47388 * 240.00429 * 2 1 3 34 34 H 1.08994 * 109.47384 * 299.99914 * 3 2 1 35 35 H 1.09002 * 109.46662 * 59.99985 * 3 2 1 36 36 H 1.09000 * 109.47325 * 179.97438 * 3 2 1 37 37 H 1.08004 * 120.34926 * 0.02562 * 6 5 4 38 38 H 1.07998 * 120.71994 * 179.97438 * 7 6 5 39 39 H 1.07995 * 120.41353 * 180.02562 * 8 7 6 40 40 H 1.09006 * 110.36854 * 323.00461 * 13 12 10 41 41 H 1.09001 * 110.36793 * 85.32027 * 13 12 10 42 42 H 1.09009 * 111.09840 * 205.10724 * 14 13 12 43 43 H 1.08996 * 110.84649 * 81.33805 * 14 13 12 44 44 H 0.96999 * 119.99826 * 271.47726 * 17 15 14 45 45 H 0.96992 * 119.99965 * 179.97438 * 21 20 18 46 46 H 1.09010 * 109.47135 * 61.44847 * 28 26 12 47 47 H 1.08994 * 109.47157 * 181.45057 * 28 26 12 48 48 H 1.09002 * 109.47326 * 301.45671 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.1987 -1.3129 1.0652 6 6 3.7147 -1.9867 2.1696 7 6 4.9311 -2.6359 2.0591 8 6 5.5987 -2.5918 0.8432 9 6 5.0271 -1.8997 -0.2199 10 6 5.7304 -1.8450 -1.5227 11 8 6.8014 -2.4026 -1.6590 12 7 5.1822 -1.1768 -2.5569 13 6 3.8918 -0.4642 -2.5322 14 6 3.4319 -0.4208 -4.0085 15 6 4.7793 -0.2218 -4.7515 16 1 5.0615 0.8310 -4.7632 17 7 4.7036 -0.7548 -6.1140 18 6 4.3253 0.0598 -7.1478 19 1 4.0823 1.0948 -6.9586 20 6 4.2531 -0.4454 -8.4386 21 7 4.5487 -1.7071 -8.6692 22 14 3.7363 0.6655 -9.8487 23 1 4.6885 1.7995 -9.9600 24 1 3.7382 -0.1094 -11.1156 25 1 2.3707 1.1890 -9.5914 26 6 5.7692 -1.0425 -3.8981 27 1 5.9113 -2.0283 -4.3408 28 6 7.1100 -0.3110 -3.8084 29 7 3.8562 -1.2884 -0.0780 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4426 0.0005 37 1 3.1708 -2.0021 3.1026 38 1 5.3527 -3.1650 2.9010 39 1 6.5501 -3.0886 0.7235 40 1 3.1689 -1.0093 -1.9251 41 1 4.0243 0.5474 -2.1486 42 1 2.7602 0.4193 -4.1857 43 1 2.9622 -1.3613 -4.2963 44 1 4.9215 -1.6846 -6.2839 45 1 4.4978 -2.0602 -9.5711 46 1 7.7994 -0.8899 -3.1938 47 1 7.5267 -0.1923 -4.8085 48 1 6.9591 0.6705 -3.3589 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987285540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:36 Heat of formation + Delta-G solvation = -31.134470 kcal Electronic energy + Delta-G solvation = -29701.825983 eV Core-core repulsion = 25757.166730 eV Total energy + Delta-G solvation = -3944.659253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.11252 -40.92557 -39.41236 -38.53062 -35.97347 -34.36483 -33.92133 -33.07808 -32.26521 -31.43613 -30.59180 -28.13195 -26.89578 -26.16466 -25.00724 -24.42709 -23.50099 -22.15973 -21.84127 -20.89264 -19.22292 -18.95863 -18.55081 -17.48085 -17.04916 -16.92333 -16.82224 -16.54999 -16.20342 -15.63035 -15.44097 -15.38221 -14.98639 -14.73930 -14.63007 -14.36363 -14.15940 -13.95969 -13.60391 -13.38176 -13.24491 -13.16741 -13.09789 -13.06634 -12.90746 -12.80968 -12.63326 -12.57667 -12.21575 -12.14563 -11.84958 -11.81387 -11.72202 -11.51083 -11.33880 -10.98387 -10.92665 -10.44137 -9.82388 -9.49777 -9.02595 -7.93266 -5.23665 -0.41584 0.24671 1.49722 1.52624 1.58473 1.64555 1.77575 2.00376 2.57635 2.76923 2.87416 3.38006 3.55058 3.73082 3.79450 3.89798 3.95300 4.00925 4.03220 4.06713 4.15555 4.21765 4.27632 4.36137 4.40077 4.47710 4.52591 4.65148 4.74644 4.81123 4.86400 4.87902 4.90762 4.96593 5.01527 5.04940 5.11428 5.18637 5.20453 5.27885 5.29782 5.34877 5.41227 5.41749 5.54393 6.19589 6.26454 6.42463 6.58011 6.99688 7.33051 8.03920 8.28846 9.30001 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.003332 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.840098 B = 8402.364196 C = 9906.888733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 C -0.165 4.165 4 O -0.304 6.304 5 C 0.305 3.695 6 C -0.159 4.159 7 C -0.032 4.032 8 C -0.151 4.151 9 C 0.100 3.900 10 C 0.573 3.427 11 O -0.567 6.567 12 N -0.589 5.589 13 C 0.116 3.884 14 C -0.151 4.151 15 C 0.174 3.826 16 H 0.073 0.927 17 N -0.727 5.727 18 C -0.239 4.239 19 H 0.083 0.917 20 C -0.074 4.074 21 N -0.971 5.971 22 Si 0.974 3.026 23 H -0.277 1.277 24 H -0.300 1.300 25 H -0.275 1.275 26 C 0.129 3.871 27 H 0.050 0.950 28 C -0.143 4.143 29 N -0.521 5.521 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.175 0.825 38 H 0.191 0.809 39 H 0.150 0.850 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.720 3.429 26.581 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 C -0.222 4.222 4 O -0.212 6.212 5 C 0.123 3.877 6 C -0.180 4.180 7 C -0.057 4.057 8 C -0.173 4.173 9 C -0.035 4.035 10 C 0.361 3.639 11 O -0.447 6.447 12 N -0.320 5.320 13 C -0.006 4.006 14 C -0.192 4.192 15 C 0.064 3.936 16 H 0.091 0.909 17 N -0.366 5.366 18 C -0.371 4.371 19 H 0.101 0.899 20 C -0.266 4.266 21 N -0.621 5.621 22 Si 0.803 3.197 23 H -0.203 1.203 24 H -0.227 1.227 25 H -0.201 1.201 26 C 0.024 3.976 27 H 0.068 0.932 28 C -0.201 4.201 29 N -0.248 5.248 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.192 0.808 38 H 0.208 0.792 39 H 0.168 0.832 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.711 3.756 25.923 26.809 hybrid contribution 0.385 -0.495 -1.012 1.190 sum -5.325 3.261 24.912 25.682 Atomic orbital electron populations 1.21913 0.91266 1.03182 1.04073 1.22676 0.95784 0.93045 0.87095 1.22204 1.01119 0.95203 1.03709 1.86303 1.31112 1.64475 1.39276 1.20227 0.86562 0.91008 0.89880 1.21718 0.97708 0.99296 0.99242 1.21865 0.92063 0.94489 0.97306 1.22138 1.02423 0.99791 0.92922 1.20500 0.91367 0.97697 0.93946 1.18019 0.84384 0.78283 0.83199 1.90740 1.22842 1.47552 1.83534 1.48430 1.22517 1.50621 1.10443 1.22724 0.84109 0.97208 0.96589 1.23441 0.99249 1.02328 0.94165 1.21393 0.92461 0.96125 0.83641 0.90875 1.42489 1.81083 1.10764 1.02220 1.19592 1.36349 0.93801 0.87315 0.89890 1.25571 1.03398 0.97540 1.00086 1.69830 1.56965 1.14768 1.20568 0.85210 0.78457 0.77707 0.78359 1.20337 1.22666 1.20090 1.21787 0.94638 0.98939 0.82208 0.93210 1.21925 0.95867 1.00172 1.02142 1.67302 1.09077 1.23070 1.25386 0.90897 0.89090 0.92123 0.90230 0.89666 0.91291 0.93456 0.80772 0.79205 0.83216 0.87645 0.90480 0.89108 0.92805 0.79684 0.94092 0.92619 0.91877 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.56 71.98 0.69 -1.30 16 2 C 0.07 1.23 3.11 30.60 0.10 1.32 16 3 C -0.16 -2.63 9.53 71.98 0.69 -1.94 16 4 O -0.30 -5.92 9.76 -89.85 -0.88 -6.80 16 5 C 0.30 6.23 7.46 84.93 0.63 6.87 16 6 C -0.16 -2.27 10.05 22.54 0.23 -2.05 16 7 C -0.03 -0.42 10.16 22.42 0.23 -0.19 16 8 C -0.15 -3.12 9.63 22.62 0.22 -2.90 16 9 C 0.10 2.70 6.72 41.84 0.28 2.98 16 10 C 0.57 19.33 7.63 86.88 0.66 19.99 16 11 O -0.57 -22.04 15.36 -3.76 -0.06 -22.10 16 12 N -0.59 -19.69 3.07 -791.51 -2.43 -22.12 16 13 C 0.12 3.30 5.77 86.78 0.50 3.80 16 14 C -0.15 -5.02 6.76 31.91 0.22 -4.81 16 15 C 0.17 6.78 3.14 46.18 0.15 6.93 16 16 H 0.07 2.78 7.80 -2.39 -0.02 2.76 16 17 N -0.73 -36.16 5.22 -317.33 -1.66 -37.81 16 18 C -0.24 -12.84 9.96 84.03 0.84 -12.01 16 19 H 0.08 4.18 7.83 -2.92 -0.02 4.16 16 20 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 21 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 22 Si 0.97 45.29 29.55 68.60 2.03 47.31 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 C 0.13 4.83 3.21 45.34 0.15 4.97 16 27 H 0.05 2.16 7.72 -2.39 -0.02 2.14 16 28 C -0.14 -4.97 9.10 71.98 0.66 -4.32 16 29 N -0.52 -12.70 5.36 -298.20 -1.60 -14.30 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.65 4.81 -2.39 -0.01 1.63 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 39 H 0.15 3.05 7.63 -2.91 -0.02 3.03 16 40 H 0.11 2.87 3.82 -2.38 -0.01 2.86 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 43 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.37 20.42 7.56 -92.71 -0.70 19.72 16 45 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 46 H 0.05 2.00 6.88 -2.38 -0.02 1.98 16 47 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -69.31 388.02 2.65 -66.66 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: 0.27 Total: 34.54 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.68 Total: 13.65 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -5.40 Total: -133.28 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.93 Total: -28.89 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.31 2.65 -66.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987285540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.528 kcal (2) G-P(sol) polarization free energy of solvation -69.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds