Wall clock time and date at job start Tue Mar 31 2020 17:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.87328 * 2 1 4 4 C 1.54329 * 110.00960 * 121.09411 * 2 1 3 5 5 H 1.08995 * 110.72063 * 260.05142 * 4 2 1 6 6 N 1.46503 * 110.71560 * 23.14633 * 4 2 1 7 7 C 1.36940 * 119.99768 * 205.00051 * 6 4 2 8 8 H 1.08006 * 119.99728 * 359.97438 * 7 6 4 9 9 C 1.38805 * 120.00104 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00032 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00217 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46750 * 89.99851 * 11 9 7 13 13 H 1.48495 * 109.47444 * 210.00051 * 11 9 7 14 14 H 1.48498 * 109.47175 * 330.00260 * 11 9 7 15 15 C 1.55152 * 102.94030 * 141.68253 * 4 2 1 16 16 C 1.55132 * 101.48808 * 324.33715 * 15 4 2 17 17 N 1.47016 * 109.88741 * 238.98415 * 2 1 3 18 18 C 1.34777 * 125.64839 * 61.44721 * 17 2 1 19 19 O 1.21613 * 119.99966 * 0.02562 * 18 17 2 20 20 C 1.47425 * 119.99932 * 180.27999 * 18 17 2 21 21 C 1.36088 * 126.44683 * 179.75172 * 20 18 17 22 22 O 1.34255 * 106.94860 * 179.97438 * 21 20 18 23 23 C 1.34050 * 108.22840 * 359.97438 * 22 21 20 24 24 C 1.50699 * 125.37970 * 180.02562 * 23 22 21 25 25 C 1.54273 * 110.03031 * 57.88776 * 24 23 22 26 26 C 1.54961 * 104.15783 * 217.13293 * 25 24 23 27 27 C 1.54891 * 102.77898 * 37.88978 * 26 25 24 28 28 C 1.53875 * 110.03461 * 300.67043 * 24 23 22 29 29 N 1.29937 * 109.24195 * 359.72503 * 23 22 21 30 30 H 1.08997 * 109.47165 * 179.56252 * 1 2 3 31 31 H 1.08997 * 109.47388 * 299.56793 * 1 2 3 32 32 H 1.09002 * 109.46610 * 59.56059 * 1 2 3 33 33 H 0.97000 * 120.00361 * 24.99982 * 6 4 2 34 34 H 0.97001 * 120.00134 * 180.02562 * 10 9 7 35 35 H 1.09005 * 111.00216 * 82.57712 * 15 4 2 36 36 H 1.09005 * 111.00739 * 206.38536 * 15 4 2 37 37 H 1.09004 * 110.49570 * 278.44917 * 16 15 4 38 38 H 1.09004 * 110.34175 * 156.06204 * 16 15 4 39 39 H 1.08000 * 126.52864 * 359.96732 * 21 20 18 40 40 H 1.09006 * 110.01675 * 179.27429 * 24 23 22 41 41 H 1.08989 * 110.48403 * 335.78331 * 25 24 23 42 42 H 1.09000 * 110.48698 * 98.42361 * 25 24 23 43 43 H 1.09001 * 110.72556 * 279.57546 * 26 25 24 44 44 H 1.08998 * 110.92056 * 156.29750 * 26 25 24 45 45 H 1.09000 * 110.48597 * 203.40482 * 27 26 25 46 46 H 1.09001 * 110.60267 * 80.81502 * 27 26 25 47 47 H 1.09003 * 110.02751 * 238.57094 * 28 24 23 48 48 H 1.08995 * 110.03091 * 359.95010 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7489 1.2418 5 1 2.3555 -0.0451 2.0190 6 7 1.0514 -1.6843 1.7498 7 6 1.0684 -2.0597 3.0666 8 1 1.8241 -1.6665 3.7305 9 6 0.1150 -2.9464 3.5479 10 7 -0.8056 -3.4259 2.7387 11 14 0.1385 -3.4590 5.3440 12 1 -0.6943 -2.5201 6.1376 13 1 -0.4061 -4.8344 5.4734 14 1 1.5348 -3.4300 5.8488 15 6 3.2917 -1.5107 0.6895 16 6 2.8130 -1.8793 -0.7393 17 7 2.0301 -0.7124 -1.1848 18 6 1.8050 -0.3603 -2.4662 19 8 1.1369 0.6242 -2.7179 20 6 2.3642 -1.1717 -3.5627 21 6 2.2161 -0.9413 -4.8957 22 8 2.8827 -1.9140 -5.5375 23 6 3.4288 -2.7241 -4.6196 24 6 4.2622 -3.9438 -4.9175 25 6 5.4864 -3.5518 -5.7706 26 6 5.6651 -4.7422 -6.7466 27 6 4.2042 -5.1316 -7.0831 28 6 3.4474 -4.9481 -5.7514 29 7 3.1315 -2.2878 -3.4323 30 1 -0.3633 -1.0276 -0.0078 31 1 -0.3634 0.5071 0.8938 32 1 -0.3632 0.5207 -0.8861 33 1 0.3729 -2.0377 1.1534 34 1 -1.4721 -4.0453 3.0750 35 1 4.1681 -0.8633 0.6567 36 1 3.4925 -2.4070 1.2765 37 1 2.1852 -2.7701 -0.7136 38 1 3.6682 -2.0359 -1.3968 39 1 1.6668 -0.1304 -5.3508 40 1 4.5888 -4.4089 -3.9874 41 1 5.2884 -2.6329 -6.3222 42 1 6.3690 -3.4375 -5.1414 43 1 6.1820 -5.5678 -6.2574 44 1 6.1989 -4.4322 -7.6449 45 1 4.1521 -6.1697 -7.4115 46 1 3.7971 -4.4697 -7.8475 47 1 3.3793 -5.9008 -5.2262 48 1 2.4489 -4.5537 -5.9397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987288090.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:53 Heat of formation + Delta-G solvation = 0.384493 kcal Electronic energy + Delta-G solvation = -29217.821408 eV Core-core repulsion = 25274.528920 eV Total energy + Delta-G solvation = -3943.292488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.55117 -39.77198 -38.42695 -37.37348 -34.99173 -33.85698 -31.72402 -31.26659 -30.67646 -29.13826 -28.88958 -28.23372 -25.11109 -24.48136 -23.44513 -22.62964 -22.00307 -21.09822 -20.67937 -19.35742 -18.72080 -17.52202 -17.33979 -16.88091 -16.64823 -15.98297 -15.96407 -15.64016 -14.80156 -14.58341 -14.15902 -13.93840 -13.80904 -13.74363 -13.56564 -13.13600 -12.73292 -12.59749 -12.20672 -12.18736 -11.90801 -11.71894 -11.53751 -11.49661 -11.33472 -11.23209 -11.13501 -11.01551 -10.97398 -10.92820 -10.81265 -10.55875 -10.45621 -10.16555 -9.99616 -9.74950 -9.57090 -9.09142 -8.91980 -8.21769 -6.99116 -5.78786 -3.08103 1.06746 1.98123 2.42752 3.17941 3.42637 3.46219 3.48052 3.49518 3.67545 4.14596 4.18298 4.48587 4.57112 4.71299 4.78174 4.99196 5.04604 5.07348 5.15907 5.23432 5.24966 5.32719 5.43072 5.45743 5.52006 5.55636 5.56524 5.64249 5.69586 5.75169 5.76440 5.84713 5.86720 5.90710 5.93932 6.01825 6.13841 6.38736 6.43457 6.51562 6.62540 6.67661 6.84418 6.90663 7.06327 7.42992 7.68900 7.86207 8.36663 8.39772 9.50941 10.06811 10.42034 11.43515 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.002866 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.402702 B = 9765.821661 C =10870.988664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.125 3.875 3 H 0.072 0.928 4 C 0.172 3.828 5 H 0.070 0.930 6 N -0.713 5.713 7 C -0.242 4.242 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.162 4.162 16 C 0.110 3.890 17 N -0.588 5.588 18 C 0.608 3.392 19 O -0.547 6.547 20 C -0.057 4.057 21 C 0.002 3.998 22 O -0.195 6.195 23 C 0.200 3.800 24 C 0.003 3.997 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.121 4.121 29 N -0.451 5.451 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.388 0.612 34 H 0.255 0.745 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.229 0.771 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.799 -0.671 -20.551 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 H 0.090 0.910 4 C 0.060 3.940 5 H 0.088 0.912 6 N -0.355 5.355 7 C -0.373 4.373 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.579 5.579 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.219 1.219 14 H -0.208 1.208 15 C -0.203 4.203 16 C -0.013 4.013 17 N -0.319 5.319 18 C 0.396 3.604 19 O -0.426 6.426 20 C -0.177 4.177 21 C -0.072 4.072 22 O -0.082 6.082 23 C -0.009 4.009 24 C -0.016 4.016 25 C -0.158 4.158 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.159 4.159 29 N -0.180 5.180 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.225 0.775 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.245 0.755 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.623 -0.461 -19.975 23.634 hybrid contribution -0.613 -0.131 0.279 0.686 sum 12.010 -0.592 -19.696 23.076 Atomic orbital electron populations 1.21922 0.94130 1.03008 1.01660 1.22084 0.95519 0.95640 0.84545 0.91029 1.21197 0.89223 0.91688 0.91901 0.91226 1.42552 1.32568 1.51515 1.08895 1.19243 1.10703 1.21184 0.86152 0.91035 1.24742 0.97983 1.00108 0.97877 1.69666 1.18380 1.35609 1.34203 0.86192 0.77419 0.77635 0.84918 1.21740 1.21858 1.20750 1.23589 0.98973 1.02205 0.95551 1.22512 0.95442 0.87705 0.95596 1.48409 1.50736 1.28467 1.04266 1.16347 0.80113 0.83301 0.80672 1.90784 1.40900 1.27466 1.83442 1.21841 1.04455 0.97190 0.94244 1.25219 0.97430 0.92976 0.91566 1.84336 1.52184 1.32131 1.39502 1.26282 0.97988 0.95294 0.81312 1.20481 0.92423 0.86997 1.01717 1.22503 0.96519 0.99247 0.97526 1.22511 0.96839 0.97701 0.99041 1.22381 0.95132 1.01720 0.96964 1.22253 0.99113 0.98778 0.95744 1.70975 1.13619 1.09745 1.23658 0.91561 0.91355 0.92735 0.77546 0.93468 0.92237 0.89529 0.91325 0.89498 0.75464 0.86381 0.90887 0.90436 0.90928 0.91076 0.91149 0.91349 0.90215 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.51 37.16 0.32 -2.63 16 2 C 0.13 2.34 3.42 -66.95 -0.23 2.11 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.17 3.40 3.47 -66.09 -0.23 3.17 16 5 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 6 N -0.71 -17.33 4.56 -51.65 -0.24 -17.56 16 7 C -0.24 -6.49 9.96 -15.06 -0.15 -6.64 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 11 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C -0.16 -2.83 6.79 -24.46 -0.17 -2.99 16 16 C 0.11 1.91 6.14 -2.41 -0.01 1.89 16 17 N -0.59 -10.64 3.06 -164.13 -0.50 -11.14 16 18 C 0.61 10.96 7.64 -12.52 -0.10 10.86 16 19 O -0.55 -10.76 15.91 5.27 0.08 -10.68 16 20 C -0.06 -0.88 6.82 -83.02 -0.57 -1.44 16 21 C 0.00 0.02 11.95 29.96 0.36 0.38 16 22 O -0.20 -2.24 10.57 6.52 0.07 -2.18 16 23 C 0.20 2.35 6.50 -13.08 -0.08 2.27 16 24 C 0.00 0.03 3.44 -90.65 -0.31 -0.29 16 25 C -0.12 -0.81 6.36 -25.03 -0.16 -0.97 16 26 C -0.12 -0.66 6.91 -24.70 -0.17 -0.83 16 27 C -0.12 -0.73 6.83 -25.07 -0.17 -0.90 16 28 C -0.12 -0.89 6.45 -25.61 -0.17 -1.05 16 29 N -0.45 -6.55 8.43 -7.65 -0.06 -6.61 16 30 H 0.07 1.46 6.21 -51.93 -0.32 1.14 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.05 1.06 6.87 -51.93 -0.36 0.71 16 33 H 0.39 10.19 5.68 -40.82 -0.23 9.96 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.41 6.13 -51.93 -0.32 1.09 16 39 H 0.23 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.54 7.72 -51.93 -0.40 0.14 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 LS Contribution 383.41 15.07 5.78 5.78 Total: -1.00 -31.78 383.41 -8.60 -40.37 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.49 Total: 9.44 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.94 Total: 2.53 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.08 Total: -62.31 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.15 Total: -12.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.78 -8.60 -40.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987288090.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.759 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds