Wall clock time and date at job start Tue Mar 31 2020 17:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.00206 * 2 1 4 4 C 1.54328 * 109.87685 * 238.90365 * 2 1 3 5 5 H 1.09006 * 110.86343 * 144.34523 * 4 2 1 6 6 N 1.46496 * 110.71942 * 21.14305 * 4 2 1 7 7 C 1.36945 * 119.99718 * 160.02194 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55157 * 102.94124 * 262.77564 * 4 2 1 16 16 C 1.54907 * 101.58315 * 324.50162 * 15 4 2 17 17 N 1.47022 * 109.88002 * 121.10128 * 2 1 3 18 18 C 1.34783 * 125.64548 * 300.43215 * 17 2 1 19 19 O 1.21603 * 120.00117 * 0.02562 * 18 17 2 20 20 C 1.47423 * 119.99385 * 180.02562 * 18 17 2 21 21 C 1.36092 * 126.44357 * 179.68765 * 20 18 17 22 22 O 1.34255 * 106.94867 * 179.90022 * 21 20 18 23 23 C 1.34050 * 108.22703 * 0.36926 * 22 21 20 24 24 C 1.50694 * 125.37928 * 179.72973 * 23 22 21 25 25 C 1.54269 * 110.03267 * 57.20467 * 24 23 22 26 26 C 1.54888 * 104.19693 * 217.10347 * 25 24 23 27 27 C 1.54886 * 102.74851 * 37.94692 * 26 25 24 28 28 C 1.53882 * 110.03412 * 300.04185 * 24 23 22 29 29 N 1.29938 * 109.23936 * 359.76687 * 23 22 21 30 30 H 1.08991 * 109.47376 * 181.09476 * 1 2 3 31 31 H 1.09004 * 109.46838 * 301.09832 * 1 2 3 32 32 H 1.08997 * 109.47235 * 61.08835 * 1 2 3 33 33 H 0.96996 * 120.00499 * 340.01924 * 6 4 2 34 34 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 35 35 H 1.08999 * 111.00148 * 82.57800 * 15 4 2 36 36 H 1.08997 * 111.00067 * 206.38814 * 15 4 2 37 37 H 1.09004 * 110.36391 * 155.84646 * 16 15 4 38 38 H 1.08999 * 110.36376 * 278.16831 * 16 15 4 39 39 H 1.08005 * 126.52324 * 0.03998 * 21 20 18 40 40 H 1.08997 * 110.02071 * 178.65153 * 24 23 22 41 41 H 1.08991 * 110.48855 * 335.78835 * 25 24 23 42 42 H 1.09011 * 110.48091 * 98.42856 * 25 24 23 43 43 H 1.09000 * 110.75741 * 279.62984 * 26 25 24 44 44 H 1.09003 * 110.75180 * 156.26292 * 26 25 24 45 45 H 1.09001 * 110.48663 * 203.37431 * 27 26 25 46 46 H 1.09005 * 110.60026 * 80.78764 * 27 26 25 47 47 H 1.08998 * 110.03069 * 238.57176 * 28 24 23 48 48 H 1.08999 * 110.02914 * 359.95034 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2428 5 1 2.9651 -0.2844 -1.6211 6 7 1.0291 -0.8025 -2.2875 7 6 1.3876 -1.0416 -3.5874 8 1 2.4264 -1.1906 -3.8423 9 6 0.4158 -1.0923 -4.5772 10 7 -0.8502 -0.9101 -4.2665 11 14 0.9049 -1.4176 -6.3505 12 1 1.1793 -0.1276 -7.0329 13 1 2.1255 -2.2628 -6.3802 14 1 -0.2014 -2.1211 -7.0479 15 6 2.3517 -2.1696 -0.6924 16 6 2.8567 -1.8499 0.7367 17 7 2.0300 -0.7142 1.1839 18 6 1.7754 -0.3846 2.4657 19 8 1.0768 0.5781 2.7187 20 6 2.3439 -1.1911 3.5610 21 6 2.1780 -0.9751 4.8944 22 8 2.8597 -1.9383 5.5347 23 6 3.4385 -2.7240 4.6157 24 6 4.3021 -3.9229 4.9120 25 6 3.5214 -4.9364 5.7741 26 6 4.5848 -5.5085 6.7442 27 6 5.4517 -4.2674 7.0715 28 6 5.5294 -3.4975 5.7370 29 7 3.1380 -2.2880 3.4291 30 1 -0.3633 -1.0274 0.0196 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4968 -0.8995 33 1 0.0962 -0.6683 -2.0586 34 1 -1.5292 -0.9452 -4.9583 35 1 1.4450 -2.7736 -0.6605 36 1 3.1264 -2.6621 -1.2801 37 1 2.7086 -2.7082 1.3921 38 1 3.9091 -1.5669 0.7127 39 1 1.6049 -0.1813 5.3505 40 1 4.6220 -4.3915 3.9813 41 1 2.7292 -4.4344 6.3294 42 1 3.1081 -5.7292 5.1504 43 1 5.1811 -6.2778 6.2536 44 1 4.1140 -5.8997 7.6461 45 1 6.4471 -4.5719 7.3949 46 1 4.9732 -3.6565 7.8371 47 1 6.4449 -3.7604 5.2070 48 1 5.5009 -2.4238 5.9223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987288093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:55 Heat of formation + Delta-G solvation = 1.992447 kcal Electronic energy + Delta-G solvation = -28928.922369 eV Core-core repulsion = 24985.699607 eV Total energy + Delta-G solvation = -3943.222762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.63611 -39.84582 -38.50377 -37.42724 -35.08571 -34.05532 -31.79881 -31.34911 -30.62135 -29.21105 -28.96219 -28.29783 -25.13941 -24.64178 -23.25257 -22.68198 -22.17205 -21.16807 -20.78426 -19.34658 -18.75472 -17.68155 -17.37437 -17.01163 -16.74154 -16.09205 -15.83131 -15.43318 -15.26819 -14.58029 -14.26638 -14.17394 -13.82688 -13.69733 -13.62238 -13.27393 -12.86814 -12.43319 -12.25729 -12.08640 -11.94901 -11.77445 -11.61478 -11.55710 -11.54441 -11.36237 -11.21200 -11.18803 -11.05199 -10.96223 -10.86211 -10.60453 -10.39210 -10.16562 -9.94783 -9.84021 -9.60279 -9.17139 -8.90830 -8.32223 -6.98825 -5.79064 -3.08540 0.98848 1.89174 2.34797 3.08015 3.37642 3.42967 3.48132 3.49812 3.58406 4.07601 4.11003 4.40315 4.57648 4.62783 4.70602 4.92126 4.97426 5.00211 5.08355 5.18372 5.21617 5.27443 5.35140 5.39012 5.45261 5.47951 5.50355 5.60843 5.65034 5.68140 5.69254 5.76454 5.80679 5.83965 5.87652 5.98736 6.16290 6.25209 6.30525 6.44347 6.60386 6.66247 6.77013 6.85815 7.04088 7.34054 7.69023 7.76975 8.28838 8.39741 9.51119 10.06605 10.41829 11.43536 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.002462 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.443806 B =11370.551477 C =12316.438622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.073 0.927 4 C 0.173 3.827 5 H 0.063 0.937 6 N -0.718 5.718 7 C -0.242 4.242 8 H 0.071 0.929 9 C -0.012 4.012 10 N -0.932 5.932 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.282 1.282 14 H -0.292 1.292 15 C -0.155 4.155 16 C 0.102 3.898 17 N -0.589 5.589 18 C 0.609 3.391 19 O -0.543 6.543 20 C -0.058 4.058 21 C 0.004 3.996 22 O -0.195 6.195 23 C 0.200 3.800 24 C 0.003 3.997 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.125 4.125 28 C -0.120 4.120 29 N -0.452 5.452 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.391 0.609 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.230 0.770 40 H 0.118 0.882 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.237 -7.442 24.670 28.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.091 0.909 4 C 0.062 3.938 5 H 0.081 0.919 6 N -0.362 5.362 7 C -0.373 4.373 8 H 0.089 0.911 9 C -0.208 4.208 10 N -0.580 5.580 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.207 1.207 14 H -0.218 1.218 15 C -0.196 4.196 16 C -0.021 4.021 17 N -0.321 5.321 18 C 0.396 3.604 19 O -0.421 6.421 20 C -0.178 4.178 21 C -0.070 4.070 22 O -0.081 6.081 23 C -0.009 4.009 24 C -0.016 4.016 25 C -0.159 4.159 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.158 4.158 29 N -0.182 5.182 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.229 0.771 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.246 0.754 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.106 -7.200 24.101 27.915 hybrid contribution -0.364 0.236 -0.429 0.610 sum 11.742 -6.963 23.672 27.327 Atomic orbital electron populations 1.22010 0.94409 1.02504 1.02758 1.21882 0.95489 0.95755 0.84341 0.90890 1.21192 0.93137 0.92267 0.87235 0.91919 1.42685 1.05203 1.85295 1.02975 1.19240 0.93029 1.40996 0.84011 0.91070 1.24753 0.95309 1.02625 0.98125 1.69663 0.99327 1.56483 1.32506 0.86172 0.77168 0.77727 0.84989 1.21701 1.20737 1.21802 1.23570 1.01612 1.00954 0.93477 1.22546 0.93868 0.89053 0.96609 1.48352 1.49047 1.30345 1.04332 1.16349 0.80276 0.83148 0.80592 1.90796 1.39458 1.28537 1.83326 1.21833 1.04070 0.97700 0.94240 1.25247 0.97213 0.92953 0.91579 1.84342 1.50814 1.33451 1.39484 1.26280 0.97562 0.95719 0.81292 1.20482 0.92070 0.87357 1.01708 1.22503 0.98182 0.97699 0.97526 1.22503 0.96884 0.97561 0.99150 1.22384 1.00361 0.96563 0.96924 1.22251 0.96739 1.00964 0.95851 1.70951 1.13630 1.09874 1.23740 0.92480 0.92115 0.90040 0.77114 0.93419 0.90863 0.90678 0.89164 0.91981 0.75400 0.86399 0.90824 0.90360 0.90895 0.91017 0.91152 0.91321 0.90297 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 7.95 37.16 0.30 -2.81 16 2 C 0.13 2.41 3.48 -66.95 -0.23 2.18 16 3 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.17 3.48 3.46 -66.10 -0.23 3.25 16 5 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 6 N -0.72 -17.74 5.02 -51.65 -0.26 -18.00 16 7 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 10 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 11 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 C -0.15 -2.75 6.77 -24.58 -0.17 -2.91 16 16 C 0.10 1.59 6.14 -2.53 -0.02 1.58 16 17 N -0.59 -10.17 3.08 -164.27 -0.51 -10.68 16 18 C 0.61 10.48 7.63 -12.52 -0.10 10.38 16 19 O -0.54 -10.41 15.80 5.28 0.08 -10.32 16 20 C -0.06 -0.84 6.81 -83.03 -0.57 -1.40 16 21 C 0.00 0.04 11.95 29.96 0.36 0.40 16 22 O -0.19 -2.06 10.55 6.52 0.07 -1.99 16 23 C 0.20 2.13 6.50 -13.08 -0.09 2.05 16 24 C 0.00 0.02 3.44 -90.65 -0.31 -0.29 16 25 C -0.12 -0.74 6.35 -25.07 -0.16 -0.90 16 26 C -0.12 -0.58 6.91 -24.74 -0.17 -0.75 16 27 C -0.12 -0.61 6.83 -25.07 -0.17 -0.78 16 28 C -0.12 -0.72 6.45 -25.61 -0.17 -0.89 16 29 N -0.45 -6.00 8.44 -7.66 -0.06 -6.07 16 30 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.06 1.17 6.77 -51.93 -0.35 0.82 16 32 H 0.08 1.71 6.67 -51.93 -0.35 1.36 16 33 H 0.39 10.19 4.92 -40.82 -0.20 9.99 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.37 6.15 -51.93 -0.32 1.05 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.23 1.93 8.06 -52.48 -0.42 1.51 16 40 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.51 7.71 -51.93 -0.40 0.11 16 42 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -32.20 382.80 -8.65 -40.85 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.48 Total: 8.51 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.96 Total: 1.95 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.11 Total: -61.91 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.15 Total: -12.32 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.20 -8.65 -40.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987288093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.843 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds