Wall clock time and date at job start Tue Mar 31 2020 17:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.00206 * 2 1 4 4 C 1.54328 * 109.87685 * 238.90365 * 2 1 3 5 5 H 1.09006 * 110.86343 * 144.34523 * 4 2 1 6 6 N 1.46496 * 110.71942 * 21.14305 * 4 2 1 7 7 C 1.36945 * 119.99718 * 160.02194 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55157 * 102.94124 * 262.77564 * 4 2 1 16 16 C 1.54907 * 101.58315 * 324.50162 * 15 4 2 17 17 N 1.47022 * 109.88002 * 121.10128 * 2 1 3 18 18 C 1.34783 * 125.64548 * 300.43215 * 17 2 1 19 19 O 1.21603 * 120.00117 * 0.02562 * 18 17 2 20 20 C 1.47423 * 119.99385 * 180.02562 * 18 17 2 21 21 C 1.36092 * 126.44357 * 179.68765 * 20 18 17 22 22 O 1.34255 * 106.94867 * 179.90022 * 21 20 18 23 23 C 1.34050 * 108.22703 * 0.36926 * 22 21 20 24 24 C 1.50694 * 125.37928 * 179.72973 * 23 22 21 25 25 C 1.54269 * 110.03267 * 57.20467 * 24 23 22 26 26 C 1.54888 * 104.19693 * 217.10347 * 25 24 23 27 27 C 1.54886 * 102.74851 * 37.94692 * 26 25 24 28 28 C 1.53882 * 110.03412 * 300.04185 * 24 23 22 29 29 N 1.29938 * 109.23936 * 359.76687 * 23 22 21 30 30 H 1.08991 * 109.47376 * 181.09476 * 1 2 3 31 31 H 1.09004 * 109.46838 * 301.09832 * 1 2 3 32 32 H 1.08997 * 109.47235 * 61.08835 * 1 2 3 33 33 H 0.96996 * 120.00499 * 340.01924 * 6 4 2 34 34 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 35 35 H 1.08999 * 111.00148 * 82.57800 * 15 4 2 36 36 H 1.08997 * 111.00067 * 206.38814 * 15 4 2 37 37 H 1.09004 * 110.36391 * 155.84646 * 16 15 4 38 38 H 1.08999 * 110.36376 * 278.16831 * 16 15 4 39 39 H 1.08005 * 126.52324 * 0.03998 * 21 20 18 40 40 H 1.08997 * 110.02071 * 178.65153 * 24 23 22 41 41 H 1.08991 * 110.48855 * 335.78835 * 25 24 23 42 42 H 1.09011 * 110.48091 * 98.42856 * 25 24 23 43 43 H 1.09000 * 110.75741 * 279.62984 * 26 25 24 44 44 H 1.09003 * 110.75180 * 156.26292 * 26 25 24 45 45 H 1.09001 * 110.48663 * 203.37431 * 27 26 25 46 46 H 1.09005 * 110.60026 * 80.78764 * 27 26 25 47 47 H 1.08998 * 110.03069 * 238.57176 * 28 24 23 48 48 H 1.08999 * 110.02914 * 359.95034 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2428 5 1 2.9651 -0.2844 -1.6211 6 7 1.0291 -0.8025 -2.2875 7 6 1.3876 -1.0416 -3.5874 8 1 2.4264 -1.1906 -3.8423 9 6 0.4158 -1.0923 -4.5772 10 7 -0.8502 -0.9101 -4.2665 11 14 0.9049 -1.4176 -6.3505 12 1 1.1793 -0.1276 -7.0329 13 1 2.1255 -2.2628 -6.3802 14 1 -0.2014 -2.1211 -7.0479 15 6 2.3517 -2.1696 -0.6924 16 6 2.8567 -1.8499 0.7367 17 7 2.0300 -0.7142 1.1839 18 6 1.7754 -0.3846 2.4657 19 8 1.0768 0.5781 2.7187 20 6 2.3439 -1.1911 3.5610 21 6 2.1780 -0.9751 4.8944 22 8 2.8597 -1.9383 5.5347 23 6 3.4385 -2.7240 4.6157 24 6 4.3021 -3.9229 4.9120 25 6 3.5214 -4.9364 5.7741 26 6 4.5848 -5.5085 6.7442 27 6 5.4517 -4.2674 7.0715 28 6 5.5294 -3.4975 5.7370 29 7 3.1380 -2.2880 3.4291 30 1 -0.3633 -1.0274 0.0196 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4968 -0.8995 33 1 0.0962 -0.6683 -2.0586 34 1 -1.5292 -0.9452 -4.9583 35 1 1.4450 -2.7736 -0.6605 36 1 3.1264 -2.6621 -1.2801 37 1 2.7086 -2.7082 1.3921 38 1 3.9091 -1.5669 0.7127 39 1 1.6049 -0.1813 5.3505 40 1 4.6220 -4.3915 3.9813 41 1 2.7292 -4.4344 6.3294 42 1 3.1081 -5.7292 5.1504 43 1 5.1811 -6.2778 6.2536 44 1 4.1140 -5.8997 7.6461 45 1 6.4471 -4.5719 7.3949 46 1 4.9732 -3.6565 7.8371 47 1 6.4449 -3.7604 5.2070 48 1 5.5009 -2.4238 5.9223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987288093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:54 Heat of formation + Delta-G solvation = -18.305784 kcal Electronic energy + Delta-G solvation = -28929.802567 eV Core-core repulsion = 24985.699607 eV Total energy + Delta-G solvation = -3944.102959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.54583 -41.26013 -39.06804 -38.83502 -36.18734 -35.75125 -33.43845 -32.38187 -32.08877 -30.64813 -29.64285 -29.06245 -26.80818 -26.04800 -24.95566 -23.48934 -23.43250 -21.84890 -21.49693 -20.58105 -20.00400 -19.44814 -18.69665 -17.95441 -17.75309 -16.99964 -16.80936 -16.73160 -16.35303 -16.20295 -15.81510 -15.39193 -14.89826 -14.79055 -14.56216 -14.48681 -14.25326 -13.97362 -13.64846 -13.30670 -13.10470 -12.93109 -12.91024 -12.85047 -12.63320 -12.52658 -12.23916 -12.08603 -12.05748 -12.01444 -11.93081 -11.84491 -11.67751 -11.60088 -11.44920 -11.42314 -11.20411 -10.89875 -10.13603 -9.69299 -9.01653 -7.93263 -5.22684 0.02120 0.91001 1.48952 1.50367 1.51212 1.59473 1.80876 2.15302 2.57670 2.69983 3.34033 3.44497 3.58635 3.65094 3.73641 3.79212 3.82597 3.92695 4.05703 4.17254 4.34153 4.38572 4.46011 4.46587 4.48559 4.53682 4.54233 4.55246 4.63500 4.70075 4.79977 4.81932 4.83722 4.95558 4.99694 5.08844 5.09534 5.16526 5.23124 5.25591 5.28397 5.31945 5.35199 5.45872 5.50815 5.54894 6.27952 6.34856 6.47807 6.95465 7.35419 8.07637 8.32537 9.30415 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.002462 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.443806 B =11370.551477 C =12316.438622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.134 3.866 3 H 0.072 0.928 4 C 0.168 3.832 5 H 0.069 0.931 6 N -0.731 5.731 7 C -0.238 4.238 8 H 0.081 0.919 9 C -0.076 4.076 10 N -0.971 5.971 11 Si 0.974 3.026 12 H -0.289 1.289 13 H -0.267 1.267 14 H -0.299 1.299 15 C -0.144 4.144 16 C 0.116 3.884 17 N -0.594 5.594 18 C 0.607 3.393 19 O -0.570 6.570 20 C -0.093 4.093 21 C 0.028 3.972 22 O -0.190 6.190 23 C 0.211 3.789 24 C 0.001 3.999 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.123 4.123 28 C -0.117 4.117 29 N -0.475 5.475 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.381 0.619 34 H 0.250 0.750 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.255 0.745 40 H 0.125 0.875 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.532 -8.751 26.185 31.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.090 0.910 4 C 0.058 3.942 5 H 0.087 0.913 6 N -0.374 5.374 7 C -0.370 4.370 8 H 0.099 0.901 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.216 1.216 13 H -0.191 1.191 14 H -0.226 1.226 15 C -0.185 4.185 16 C -0.006 4.006 17 N -0.325 5.325 18 C 0.397 3.603 19 O -0.450 6.450 20 C -0.212 4.212 21 C -0.046 4.046 22 O -0.075 6.075 23 C 0.001 3.999 24 C -0.018 4.018 25 C -0.158 4.158 26 C -0.156 4.156 27 C -0.160 4.160 28 C -0.156 4.156 29 N -0.204 5.204 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.217 0.783 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.143 0.857 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.109 0.891 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.463 -8.528 25.643 30.651 hybrid contribution -1.028 0.642 -0.757 1.428 sum 13.436 -7.886 24.887 29.361 Atomic orbital electron populations 1.21827 0.95256 1.01409 1.01712 1.21665 0.94671 0.95822 0.84796 0.90974 1.21361 0.92165 0.93976 0.86727 0.91334 1.42846 1.05700 1.85472 1.03389 1.19647 0.93356 1.38955 0.85026 0.90096 1.25568 0.95372 1.03723 1.02155 1.69828 1.00328 1.58659 1.33337 0.85126 0.76955 0.77481 0.80092 1.21618 1.19128 1.22564 1.23391 1.01253 0.98885 0.94961 1.22504 0.94235 0.88844 0.95005 1.48368 1.49387 1.30611 1.04117 1.16719 0.79707 0.83013 0.80905 1.90769 1.40695 1.29819 1.83757 1.21528 1.06393 0.98991 0.94289 1.25710 0.95603 0.92624 0.90689 1.84395 1.50595 1.33265 1.39285 1.26953 0.96603 0.95726 0.80607 1.20753 0.92201 0.86324 1.02558 1.22510 0.98302 0.97390 0.97638 1.22501 0.96403 0.97612 0.99065 1.22387 1.01110 0.96405 0.96127 1.22259 0.96502 1.00399 0.96397 1.70862 1.14436 1.10057 1.25087 0.93584 0.92080 0.91892 0.78287 0.94087 0.92760 0.89369 0.88324 0.90313 0.72878 0.85741 0.91774 0.90008 0.89880 0.90350 0.89900 0.91728 0.89082 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.81 7.95 71.98 0.57 -5.24 16 2 C 0.13 5.08 3.48 45.34 0.16 5.24 16 3 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 4 C 0.17 6.70 3.46 46.18 0.16 6.86 16 5 H 0.07 2.67 8.12 -2.38 -0.02 2.65 16 6 N -0.73 -36.63 5.02 -317.32 -1.59 -38.22 16 7 C -0.24 -12.96 9.98 84.03 0.84 -12.12 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 10 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16 11 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 15 C -0.14 -4.99 6.77 31.99 0.22 -4.77 16 16 C 0.12 3.47 6.14 86.86 0.53 4.01 16 17 N -0.59 -20.22 3.08 -791.89 -2.44 -22.66 16 18 C 0.61 20.63 7.63 86.66 0.66 21.29 16 19 O -0.57 -21.83 15.80 -4.04 -0.06 -21.90 16 20 C -0.09 -2.57 6.81 40.41 0.28 -2.30 16 21 C 0.03 0.59 11.95 67.32 0.80 1.39 16 22 O -0.19 -3.64 10.55 0.40 0.00 -3.64 16 23 C 0.21 4.11 6.50 88.39 0.57 4.68 16 24 C 0.00 0.01 3.44 -10.81 -0.04 -0.03 16 25 C -0.12 -1.22 6.35 31.67 0.20 -1.02 16 26 C -0.12 -0.79 6.91 31.88 0.22 -0.57 16 27 C -0.12 -0.89 6.83 31.67 0.22 -0.67 16 28 C -0.12 -1.14 6.45 31.32 0.20 -0.93 16 29 N -0.48 -11.89 8.44 -293.04 -2.47 -14.37 16 30 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 31 H 0.06 2.43 6.77 -2.38 -0.02 2.41 16 32 H 0.06 2.76 6.67 -2.39 -0.02 2.75 16 33 H 0.38 20.50 4.92 -92.71 -0.46 20.04 16 34 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.10 2.85 6.15 -2.38 -0.01 2.84 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.26 3.74 8.06 -2.91 -0.02 3.71 16 40 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 0.78 7.71 -2.39 -0.02 0.76 16 42 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 47 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 0.71 7.67 -2.39 -0.02 0.69 16 Total: -1.00 -69.54 382.80 2.32 -67.22 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.51 Total: 32.95 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 6.06 Total: 11.96 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -6.22 Total: -134.44 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.06 Total: -25.53 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -69.54 2.32 -67.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987288093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.911 kcal (2) G-P(sol) polarization free energy of solvation -69.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds