Wall clock time and date at job start Tue Mar 31 2020 17:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46739 * 2 1 4 4 O 1.42901 * 109.47551 * 120.00240 * 2 1 3 5 5 C 1.35683 * 117.00052 * 150.00019 * 4 2 1 6 6 C 1.38892 * 119.62121 * 180.25743 * 5 4 2 7 7 C 1.39577 * 118.94271 * 180.31444 * 6 5 4 8 8 C 1.48161 * 120.88801 * 179.70979 * 7 6 5 9 9 O 1.21512 * 120.00114 * 24.81474 * 8 7 6 10 10 N 1.34780 * 119.99815 * 204.80834 * 8 7 6 11 11 C 1.47417 * 125.64988 * 356.52832 * 10 8 7 12 12 C 1.54906 * 104.83531 * 155.83256 * 11 10 8 13 13 C 1.55158 * 101.58139 * 37.00897 * 12 11 10 14 14 H 1.08997 * 110.72082 * 82.86515 * 13 12 11 15 15 N 1.46497 * 110.72014 * 205.95927 * 13 12 11 16 16 C 1.36941 * 120.00017 * 273.54266 * 15 13 12 17 17 H 1.07991 * 119.99797 * 0.02562 * 16 15 13 18 18 C 1.38819 * 119.99912 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99841 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47243 * 60.00354 * 20 18 16 22 22 H 1.48502 * 109.47170 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47291 * 300.00425 * 20 18 16 24 24 C 1.47021 * 125.64740 * 176.21531 * 10 8 7 25 25 H 1.09007 * 109.88563 * 300.51811 * 24 10 8 26 26 C 1.53003 * 109.88290 * 61.68066 * 24 10 8 27 27 C 1.39962 * 118.21759 * 359.44533 * 7 6 5 28 28 C 1.37980 * 119.13441 * 0.26615 * 27 7 6 29 29 N 1.31906 * 120.97580 * 0.02857 * 28 27 7 30 30 H 1.08993 * 109.46859 * 299.99545 * 1 2 3 31 31 H 1.08990 * 109.47188 * 59.99699 * 1 2 3 32 32 H 1.08998 * 109.46530 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46821 * 240.00930 * 2 1 3 34 34 H 1.08999 * 109.46649 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47261 * 300.00512 * 3 2 1 36 36 H 1.08999 * 109.46705 * 60.00858 * 3 2 1 37 37 H 1.07999 * 120.53346 * 0.05130 * 6 5 4 38 38 H 1.08999 * 110.36681 * 274.67318 * 11 10 8 39 39 H 1.09005 * 110.36869 * 36.88243 * 11 10 8 40 40 H 1.09000 * 111.00768 * 155.08436 * 12 11 10 41 41 H 1.09004 * 111.00664 * 278.93681 * 12 11 10 42 42 H 0.97006 * 120.00325 * 93.54619 * 15 13 12 43 43 H 0.97003 * 119.99265 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.46695 * 58.54790 * 26 24 10 45 45 H 1.08996 * 109.47092 * 178.54386 * 26 24 10 46 46 H 1.08997 * 109.47287 * 298.54572 * 26 24 10 47 47 H 1.08003 * 120.43012 * 180.29718 * 27 7 6 48 48 H 1.07997 * 119.50871 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 3.1989 -1.3130 1.0651 6 6 3.7108 -1.9899 2.1646 7 6 4.9418 -2.6371 2.0463 8 6 5.5310 -3.3665 3.1934 9 8 4.8119 -3.7996 4.0721 10 7 6.8645 -3.5498 3.2624 11 6 7.8418 -3.1432 2.2363 12 6 9.1793 -2.9876 3.0021 13 6 9.0886 -4.1493 4.0266 14 1 9.4037 -5.0890 3.5731 15 7 9.8917 -3.8552 5.2161 16 6 11.2238 -4.1717 5.2382 17 1 11.6825 -4.6376 4.3787 18 6 11.9849 -3.8925 6.3651 19 7 11.4260 -3.3242 7.4125 20 14 13.8022 -4.3235 6.3950 21 1 14.5006 -3.6000 5.3023 22 1 14.3836 -3.9268 7.7026 23 1 13.9671 -5.7870 6.2041 24 6 7.5860 -4.1825 4.3762 25 1 7.4054 -3.6283 5.2974 26 6 7.1243 -5.6321 4.5387 27 6 5.6020 -2.5833 0.8133 28 6 5.0202 -1.8937 -0.2307 29 7 3.8577 -1.2887 -0.0805 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 3.1671 -2.0116 3.0975 38 1 7.9306 -3.9138 1.4705 39 1 7.5475 -2.1948 1.7868 40 1 10.0300 -3.1214 2.3340 41 1 9.2299 -2.0235 3.5082 42 1 9.4798 -3.4364 5.9881 43 1 11.9578 -3.1295 8.2000 44 1 7.3029 -6.1764 3.6113 45 1 7.6815 -6.1023 5.3489 46 1 6.0596 -5.6504 4.7715 47 1 6.5541 -3.0756 0.6806 48 1 5.5241 -1.8487 -1.1848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987335356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:31 Heat of formation + Delta-G solvation = -11.227361 kcal Electronic energy + Delta-G solvation = -28557.981081 eV Core-core repulsion = 24614.185065 eV Total energy + Delta-G solvation = -3943.796016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16658 -40.00725 -38.38364 -37.44599 -34.32714 -33.60517 -33.03978 -31.52654 -31.01580 -30.27981 -29.15882 -27.61083 -25.45182 -25.21186 -23.78726 -22.98634 -22.74925 -21.49157 -20.31973 -19.61337 -18.30522 -17.43666 -17.20846 -16.41335 -16.08605 -15.95364 -15.83048 -15.26478 -14.76668 -14.68189 -14.32571 -14.15851 -13.96959 -13.63317 -13.45771 -13.41898 -12.97855 -12.84991 -12.69378 -12.65757 -12.39586 -12.26162 -12.19961 -11.91550 -11.47697 -11.28885 -11.22541 -11.08369 -11.07823 -10.84545 -10.64563 -10.37086 -10.25889 -10.10573 -10.01047 -9.77215 -9.62985 -8.98771 -8.75992 -8.53647 -7.07887 -5.85219 -3.16125 0.55954 0.89931 2.55275 2.81856 3.05102 3.38913 3.43724 3.44944 3.59028 3.97140 4.26210 4.51039 4.52117 4.63159 4.67250 4.73033 4.80519 4.92433 4.97177 5.13283 5.19649 5.24874 5.35674 5.38680 5.40882 5.43220 5.47665 5.48835 5.53949 5.61242 5.71061 5.76178 5.82813 5.84182 5.87674 6.00952 6.06806 6.10968 6.23150 6.38599 6.51583 6.56287 6.64046 6.85907 6.99993 7.53207 7.56784 7.61518 8.12789 8.31857 9.43346 9.97141 10.31720 11.36752 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.002215 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.232805 B =12636.650628 C =12893.612765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.169 4.169 4 O -0.300 6.300 5 C 0.321 3.679 6 C -0.138 4.138 7 C -0.041 4.041 8 C 0.569 3.431 9 O -0.529 6.529 10 N -0.597 5.597 11 C 0.087 3.913 12 C -0.157 4.157 13 C 0.177 3.823 14 H 0.066 0.934 15 N -0.714 5.714 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.127 3.873 25 H 0.081 0.919 26 C -0.155 4.155 27 C -0.196 4.196 28 C 0.136 3.864 29 N -0.530 5.530 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.151 0.849 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.157 0.843 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.209 5.200 -18.666 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.207 6.207 5 C 0.142 3.858 6 C -0.159 4.159 7 C -0.051 4.051 8 C 0.357 3.643 9 O -0.406 6.406 10 N -0.330 5.330 11 C -0.036 4.036 12 C -0.199 4.199 13 C 0.065 3.935 14 H 0.084 0.916 15 N -0.355 5.355 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.024 3.976 25 H 0.099 0.901 26 C -0.214 4.214 27 C -0.216 4.216 28 C -0.019 4.019 29 N -0.254 5.254 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.169 0.831 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.220 0.780 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.174 0.826 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.033 5.386 -18.632 26.483 hybrid contribution 1.356 -0.317 0.717 1.566 sum -16.677 5.070 -17.915 24.995 Atomic orbital electron populations 1.21912 0.92841 1.03067 1.03018 1.22362 0.94467 0.92762 0.87905 1.22221 1.02206 0.95586 1.02620 1.86321 1.31408 1.64329 1.38678 1.19585 0.86354 0.90431 0.89396 1.21087 0.95826 0.99362 0.99635 1.20115 0.94004 0.96522 0.94504 1.17712 0.81054 0.80140 0.85415 1.90781 1.59565 1.50392 1.39831 1.48421 1.04779 1.58082 1.21706 1.22820 0.89802 0.99593 0.91349 1.23628 0.94254 1.02586 0.99402 1.21249 0.87306 0.95745 0.89196 0.91568 1.42336 1.07039 1.72694 1.13406 1.19141 0.85021 1.33902 0.99572 0.91007 1.24779 0.98342 1.01231 0.96271 1.69655 1.35556 1.47413 1.05031 0.86247 0.84941 0.78071 0.76750 1.21187 1.21677 1.21171 1.21984 0.92618 0.93812 0.89157 0.90145 1.22066 1.02183 0.95103 1.02007 1.22790 1.02782 1.02864 0.93204 1.22382 0.89428 0.91336 0.98744 1.67109 1.10627 1.23245 1.24466 0.91559 0.90475 0.91781 0.89231 0.91936 0.91095 0.91922 0.83105 0.91074 0.90330 0.90319 0.90475 0.77955 0.93277 0.92994 0.90958 0.91787 0.82577 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.56 37.16 0.36 -0.64 16 2 C 0.08 0.71 3.11 -26.72 -0.08 0.62 16 3 C -0.17 -1.30 9.53 37.16 0.35 -0.95 16 4 O -0.30 -3.45 9.76 -18.75 -0.18 -3.63 16 5 C 0.32 3.89 7.45 -17.16 -0.13 3.77 16 6 C -0.14 -1.79 9.62 -38.84 -0.37 -2.16 16 7 C -0.04 -0.53 5.75 -104.68 -0.60 -1.13 16 8 C 0.57 8.93 7.52 -12.18 -0.09 8.84 16 9 O -0.53 -9.93 15.61 5.36 0.08 -9.85 16 10 N -0.60 -8.92 3.07 -164.01 -0.50 -9.43 16 11 C 0.09 1.05 5.04 -2.53 -0.01 1.04 16 12 C -0.16 -2.41 6.76 -24.58 -0.17 -2.58 16 13 C 0.18 3.23 3.11 -66.10 -0.21 3.02 16 14 H 0.07 1.20 7.84 -51.93 -0.41 0.80 16 15 N -0.71 -16.83 5.25 -51.66 -0.27 -17.11 16 16 C -0.25 -6.42 9.98 -15.05 -0.15 -6.57 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 20 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.13 2.18 3.23 -66.96 -0.22 1.97 16 25 H 0.08 1.56 7.70 -51.93 -0.40 1.16 16 26 C -0.16 -2.53 9.10 37.16 0.34 -2.19 16 27 C -0.20 -1.96 8.06 -39.03 -0.31 -2.28 16 28 C 0.14 1.24 11.17 -17.61 -0.20 1.04 16 29 N -0.53 -5.81 8.61 -13.38 -0.12 -5.93 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.80 6.98 -51.93 -0.36 0.44 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.15 1.99 7.92 -52.49 -0.42 1.57 16 38 H 0.07 0.70 7.37 -51.93 -0.38 0.32 16 39 H 0.08 0.82 6.05 -51.93 -0.31 0.51 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.39 9.89 7.51 -40.82 -0.31 9.58 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.06 1.09 6.77 -51.93 -0.35 0.74 16 47 H 0.16 1.28 4.52 -52.48 -0.24 1.05 16 48 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -31.38 388.97 -8.39 -39.77 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.37 Total: 8.81 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.59 Total: 1.44 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.16 Total: -58.98 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.10 Total: -13.48 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.38 -8.39 -39.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987335356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.539 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds