Wall clock time and date at job start Tue Mar 31 2020 17:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46739 * 2 1 4 4 O 1.42901 * 109.47551 * 120.00240 * 2 1 3 5 5 C 1.35683 * 117.00052 * 150.00019 * 4 2 1 6 6 C 1.38892 * 119.62121 * 180.25743 * 5 4 2 7 7 C 1.39577 * 118.94271 * 180.31444 * 6 5 4 8 8 C 1.48161 * 120.88801 * 179.70979 * 7 6 5 9 9 O 1.21512 * 120.00114 * 24.81474 * 8 7 6 10 10 N 1.34780 * 119.99815 * 204.80834 * 8 7 6 11 11 C 1.47417 * 125.64988 * 356.52832 * 10 8 7 12 12 C 1.54906 * 104.83531 * 155.83256 * 11 10 8 13 13 C 1.55158 * 101.58139 * 37.00897 * 12 11 10 14 14 H 1.08997 * 110.72082 * 82.86515 * 13 12 11 15 15 N 1.46497 * 110.72014 * 205.95927 * 13 12 11 16 16 C 1.36941 * 120.00017 * 273.54266 * 15 13 12 17 17 H 1.07991 * 119.99797 * 0.02562 * 16 15 13 18 18 C 1.38819 * 119.99912 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99841 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47243 * 60.00354 * 20 18 16 22 22 H 1.48502 * 109.47170 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47291 * 300.00425 * 20 18 16 24 24 C 1.47021 * 125.64740 * 176.21531 * 10 8 7 25 25 H 1.09007 * 109.88563 * 300.51811 * 24 10 8 26 26 C 1.53003 * 109.88290 * 61.68066 * 24 10 8 27 27 C 1.39962 * 118.21759 * 359.44533 * 7 6 5 28 28 C 1.37980 * 119.13441 * 0.26615 * 27 7 6 29 29 N 1.31906 * 120.97580 * 0.02857 * 28 27 7 30 30 H 1.08993 * 109.46859 * 299.99545 * 1 2 3 31 31 H 1.08990 * 109.47188 * 59.99699 * 1 2 3 32 32 H 1.08998 * 109.46530 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46821 * 240.00930 * 2 1 3 34 34 H 1.08999 * 109.46649 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47261 * 300.00512 * 3 2 1 36 36 H 1.08999 * 109.46705 * 60.00858 * 3 2 1 37 37 H 1.07999 * 120.53346 * 0.05130 * 6 5 4 38 38 H 1.08999 * 110.36681 * 274.67318 * 11 10 8 39 39 H 1.09005 * 110.36869 * 36.88243 * 11 10 8 40 40 H 1.09000 * 111.00768 * 155.08436 * 12 11 10 41 41 H 1.09004 * 111.00664 * 278.93681 * 12 11 10 42 42 H 0.97006 * 120.00325 * 93.54619 * 15 13 12 43 43 H 0.97003 * 119.99265 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.46695 * 58.54790 * 26 24 10 45 45 H 1.08996 * 109.47092 * 178.54386 * 26 24 10 46 46 H 1.08997 * 109.47287 * 298.54572 * 26 24 10 47 47 H 1.08003 * 120.43012 * 180.29718 * 27 7 6 48 48 H 1.07997 * 119.50871 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 3.1989 -1.3130 1.0651 6 6 3.7108 -1.9899 2.1646 7 6 4.9418 -2.6371 2.0463 8 6 5.5310 -3.3665 3.1934 9 8 4.8119 -3.7996 4.0721 10 7 6.8645 -3.5498 3.2624 11 6 7.8418 -3.1432 2.2363 12 6 9.1793 -2.9876 3.0021 13 6 9.0886 -4.1493 4.0266 14 1 9.4037 -5.0890 3.5731 15 7 9.8917 -3.8552 5.2161 16 6 11.2238 -4.1717 5.2382 17 1 11.6825 -4.6376 4.3787 18 6 11.9849 -3.8925 6.3651 19 7 11.4260 -3.3242 7.4125 20 14 13.8022 -4.3235 6.3950 21 1 14.5006 -3.6000 5.3023 22 1 14.3836 -3.9268 7.7026 23 1 13.9671 -5.7870 6.2041 24 6 7.5860 -4.1825 4.3762 25 1 7.4054 -3.6283 5.2974 26 6 7.1243 -5.6321 4.5387 27 6 5.6020 -2.5833 0.8133 28 6 5.0202 -1.8937 -0.2307 29 7 3.8577 -1.2887 -0.0805 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 3.1671 -2.0116 3.0975 38 1 7.9306 -3.9138 1.4705 39 1 7.5475 -2.1948 1.7868 40 1 10.0300 -3.1214 2.3340 41 1 9.2299 -2.0235 3.5082 42 1 9.4798 -3.4364 5.9881 43 1 11.9578 -3.1295 8.2000 44 1 7.3029 -6.1764 3.6113 45 1 7.6815 -6.1023 5.3489 46 1 6.0596 -5.6504 4.7715 47 1 6.5541 -3.0756 0.6806 48 1 5.5241 -1.8487 -1.1848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987335356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:30 Heat of formation + Delta-G solvation = -32.260308 kcal Electronic energy + Delta-G solvation = -28558.893138 eV Core-core repulsion = 24614.185065 eV Total energy + Delta-G solvation = -3944.708073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11966 -41.11146 -39.30368 -38.72388 -36.00381 -34.36248 -34.13056 -33.08660 -32.26229 -31.21548 -30.69736 -28.16846 -26.97239 -26.25101 -25.13016 -24.22690 -23.80320 -22.42730 -21.59472 -20.74231 -19.39684 -19.10294 -18.27093 -17.61745 -17.08194 -16.93091 -16.75164 -16.54217 -16.26895 -15.55748 -15.46284 -15.38842 -15.08874 -14.87129 -14.76571 -14.54330 -14.17305 -14.05270 -13.70073 -13.45124 -13.29377 -13.24609 -13.18618 -12.98215 -12.86843 -12.81167 -12.59877 -12.40271 -12.19926 -12.10769 -11.92887 -11.81381 -11.68765 -11.57401 -11.29944 -11.04493 -10.89291 -10.60369 -9.80500 -9.56394 -9.01415 -7.92548 -5.22576 -0.39099 0.07488 1.49693 1.52699 1.53566 1.59308 1.73406 2.07157 2.58660 2.70312 3.15183 3.28970 3.41018 3.64216 3.73950 3.86755 3.87827 3.97611 3.98690 4.03342 4.08481 4.16442 4.28135 4.33094 4.38669 4.48728 4.59476 4.61329 4.67000 4.69647 4.70018 4.83478 4.85014 4.88826 4.91353 4.96173 5.03752 5.19502 5.21406 5.24503 5.26136 5.27393 5.38286 5.45937 5.56635 6.21658 6.27212 6.37988 6.71710 6.90665 7.33917 8.06030 8.29315 9.30778 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.002215 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.232805 B =12636.650628 C =12893.612765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.164 4.164 4 O -0.316 6.316 5 C 0.315 3.685 6 C -0.159 4.159 7 C -0.053 4.053 8 C 0.566 3.434 9 O -0.571 6.571 10 N -0.596 5.596 11 C 0.092 3.908 12 C -0.149 4.149 13 C 0.171 3.829 14 H 0.076 0.924 15 N -0.730 5.730 16 C -0.234 4.234 17 H 0.086 0.914 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.974 3.026 21 H -0.274 1.274 22 H -0.303 1.303 23 H -0.277 1.277 24 C 0.133 3.867 25 H 0.047 0.953 26 C -0.146 4.146 27 C -0.184 4.184 28 C 0.148 3.852 29 N -0.531 5.531 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.134 0.866 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.183 0.817 48 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.683 5.227 -22.971 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.222 4.222 4 O -0.224 6.224 5 C 0.137 3.863 6 C -0.181 4.181 7 C -0.063 4.063 8 C 0.356 3.644 9 O -0.452 6.452 10 N -0.328 5.328 11 C -0.030 4.030 12 C -0.190 4.190 13 C 0.062 3.938 14 H 0.094 0.906 15 N -0.369 5.369 16 C -0.366 4.366 17 H 0.104 0.896 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.803 3.197 21 H -0.200 1.200 22 H -0.230 1.230 23 H -0.203 1.203 24 C 0.028 3.972 25 H 0.065 0.935 26 C -0.204 4.204 27 C -0.204 4.204 28 C -0.008 4.008 29 N -0.256 5.256 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.200 0.800 48 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -17.523 5.413 -23.020 29.433 hybrid contribution 1.105 -0.314 1.953 2.266 sum -16.418 5.099 -21.067 27.191 Atomic orbital electron populations 1.21934 0.91316 1.03154 1.04078 1.22633 0.95679 0.92940 0.86912 1.22197 1.01238 0.95167 1.03566 1.86308 1.31336 1.64513 1.40293 1.19575 0.86734 0.90518 0.89455 1.21018 0.96439 1.00975 0.99697 1.19922 0.94412 0.97264 0.94741 1.18177 0.80883 0.79642 0.85721 1.90755 1.60588 1.52142 1.41673 1.48423 1.05013 1.57670 1.21649 1.23077 0.86819 1.02300 0.90763 1.23441 0.97061 0.99692 0.98777 1.21457 0.86962 0.97296 0.88113 0.90585 1.42526 1.06905 1.72783 1.14695 1.19587 0.86027 1.31620 0.99366 0.89595 1.25598 1.02508 1.02528 0.96392 1.69833 1.36795 1.49978 1.05666 0.85204 0.80210 0.78059 0.76221 1.20020 1.22955 1.20340 1.21703 0.92502 0.94050 0.88898 0.93517 1.21960 1.01095 0.94722 1.02609 1.23041 1.03272 1.02312 0.91784 1.23151 0.88421 0.89213 0.99992 1.67237 1.11343 1.23367 1.23620 0.91793 0.88081 0.92193 0.89322 0.93327 0.88840 0.92278 0.84852 0.87063 0.87773 0.88485 0.92774 0.79810 0.94202 0.90834 0.92136 0.92971 0.80043 0.77309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.56 71.98 0.69 -1.04 16 2 C 0.07 1.20 3.11 30.60 0.10 1.29 16 3 C -0.16 -2.30 9.53 71.98 0.69 -1.61 16 4 O -0.32 -7.26 9.76 -90.02 -0.88 -8.14 16 5 C 0.32 7.44 7.45 84.80 0.63 8.07 16 6 C -0.16 -4.21 9.62 22.75 0.22 -3.99 16 7 C -0.05 -1.31 5.75 -19.90 -0.11 -1.42 16 8 C 0.57 17.69 7.52 86.88 0.65 18.34 16 9 O -0.57 -22.41 15.61 -3.75 -0.06 -22.47 16 10 N -0.60 -17.07 3.07 -791.10 -2.42 -19.49 16 11 C 0.09 1.87 5.04 86.86 0.44 2.30 16 12 C -0.15 -4.21 6.76 31.99 0.22 -3.99 16 13 C 0.17 6.09 3.11 46.18 0.14 6.23 16 14 H 0.08 2.58 7.84 -2.39 -0.02 2.57 16 15 N -0.73 -34.82 5.25 -317.35 -1.67 -36.48 16 16 C -0.23 -12.18 9.98 84.03 0.84 -11.34 16 17 H 0.09 4.14 7.83 -2.92 -0.02 4.12 16 18 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 19 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 20 Si 0.97 44.59 29.55 68.60 2.03 46.61 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 C 0.13 4.57 3.23 45.34 0.15 4.72 16 25 H 0.05 1.92 7.70 -2.38 -0.02 1.91 16 26 C -0.15 -4.76 9.10 71.98 0.65 -4.10 16 27 C -0.18 -2.98 8.06 22.63 0.18 -2.80 16 28 C 0.15 2.05 11.17 84.62 0.94 3.00 16 29 N -0.53 -10.30 8.61 -309.15 -2.66 -12.97 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 1.44 6.98 -2.39 -0.02 1.42 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.13 3.85 7.92 -2.91 -0.02 3.83 16 38 H 0.11 1.51 7.37 -2.39 -0.02 1.49 16 39 H 0.10 1.68 6.05 -2.38 -0.01 1.67 16 40 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.37 19.79 7.51 -92.70 -0.70 19.09 16 43 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 1.82 6.77 -2.39 -0.02 1.81 16 47 H 0.18 1.93 4.52 -2.91 -0.01 1.92 16 48 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -72.03 388.97 1.78 -70.25 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.27 Total: 31.43 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.89 Total: 9.78 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -6.47 Total: -127.46 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.94 Total: -30.61 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.03 1.78 -70.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987335356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.990 kcal (2) G-P(sol) polarization free energy of solvation -72.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds