Wall clock time and date at job start Tue Mar 31 2020 17:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46812 * 2 1 4 4 O 1.42897 * 109.47040 * 119.99386 * 2 1 3 5 5 C 1.35681 * 117.00220 * 150.00428 * 4 2 1 6 6 C 1.38893 * 119.62792 * 179.97438 * 5 4 2 7 7 C 1.39575 * 118.94896 * 179.97438 * 6 5 4 8 8 C 1.48160 * 120.89031 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99617 * 163.44980 * 8 7 6 10 10 N 1.34778 * 120.00269 * 343.45558 * 8 7 6 11 11 C 1.47422 * 125.64593 * 354.03695 * 10 8 7 12 12 C 1.54915 * 104.82680 * 204.09419 * 11 10 8 13 13 C 1.55157 * 101.58428 * 322.98863 * 12 11 10 14 14 H 1.09000 * 110.72012 * 276.96735 * 13 12 11 15 15 N 1.46499 * 110.71709 * 153.86707 * 13 12 11 16 16 C 1.36932 * 119.99798 * 86.45803 * 15 13 12 17 17 H 1.07995 * 120.00419 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99787 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99920 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00130 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47089 * 270.00426 * 20 18 16 22 22 H 1.48509 * 109.47101 * 30.00213 * 20 18 16 23 23 H 1.48500 * 109.47180 * 150.00223 * 20 18 16 24 24 C 1.47028 * 125.64626 * 173.99573 * 10 8 7 25 25 H 1.08998 * 109.88208 * 59.56028 * 24 10 8 26 26 C 1.52998 * 109.88176 * 298.39226 * 24 10 8 27 27 C 1.39968 * 118.21567 * 0.27743 * 7 6 5 28 28 C 1.37976 * 119.13307 * 359.43498 * 27 7 6 29 29 N 1.31914 * 120.97585 * 0.57364 * 28 27 7 30 30 H 1.08999 * 109.47764 * 300.00020 * 1 2 3 31 31 H 1.08996 * 109.46914 * 60.00717 * 1 2 3 32 32 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47393 * 239.99371 * 2 1 3 34 34 H 1.09006 * 109.47119 * 179.97438 * 3 2 1 35 35 H 1.09010 * 109.46939 * 299.99511 * 3 2 1 36 36 H 1.08993 * 109.47655 * 59.99532 * 3 2 1 37 37 H 1.07997 * 120.52744 * 0.02562 * 6 5 4 38 38 H 1.08995 * 110.36753 * 85.25859 * 11 10 8 39 39 H 1.08988 * 110.36908 * 322.92830 * 11 10 8 40 40 H 1.09007 * 110.99835 * 204.92014 * 12 11 10 41 41 H 1.08996 * 111.03626 * 81.08477 * 12 11 10 42 42 H 0.96999 * 119.99785 * 266.45402 * 15 13 12 43 43 H 0.97010 * 119.99462 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.47034 * 302.19566 * 26 24 10 45 45 H 1.08995 * 109.47022 * 62.19285 * 26 24 10 46 46 H 1.08999 * 109.46519 * 182.19184 * 26 24 10 47 47 H 1.07996 * 120.43190 * 179.72451 * 27 7 6 48 48 H 1.08000 * 119.51293 * 180.32321 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 3.1988 -1.3128 1.0655 6 6 3.7134 -1.9847 2.1668 7 6 4.9410 -2.6380 2.0466 8 6 5.5301 -3.3672 3.1938 9 8 6.4241 -4.1693 3.0095 10 7 5.0744 -3.1411 4.4419 11 6 4.0883 -2.1137 4.8235 12 6 4.3629 -1.8383 6.3230 13 6 4.7200 -3.2569 6.8401 14 1 3.8167 -3.8242 7.0646 15 7 5.5855 -3.1760 8.0193 16 6 5.0338 -3.0503 9.2662 17 1 3.9606 -3.0104 9.3804 18 6 5.8539 -2.9742 10.3836 19 7 7.1619 -3.0224 10.2444 20 14 5.1014 -2.8020 12.0846 21 1 4.9412 -1.3623 12.4115 22 1 3.7731 -3.4657 12.1077 23 1 5.9916 -3.4412 13.0867 24 6 5.4777 -3.8787 5.6481 25 1 6.5525 -3.7808 5.8005 26 6 5.1017 -5.3548 5.5054 27 6 5.6035 -2.5803 0.8150 28 6 5.0191 -1.8957 -0.2308 29 7 3.8569 -1.2899 -0.0805 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 3.1720 -2.0020 3.1011 38 1 3.0750 -2.4911 4.6865 39 1 4.2389 -1.2072 4.2375 40 1 3.4714 -1.4545 6.8193 41 1 5.2022 -1.1541 6.4479 42 1 6.5494 -3.2116 7.9167 43 1 7.7350 -2.9696 11.0253 44 1 4.0288 -5.4416 5.3341 45 1 5.6403 -5.7870 4.6621 46 1 5.3683 -5.8875 6.4183 47 1 6.5574 -3.0692 0.6836 48 1 5.5225 -1.8517 -1.1853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987335362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:36 Heat of formation + Delta-G solvation = -9.552996 kcal Electronic energy + Delta-G solvation = -28857.123848 eV Core-core repulsion = 24913.400438 eV Total energy + Delta-G solvation = -3943.723410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18293 -39.96566 -38.42185 -37.39937 -34.36204 -33.59070 -33.10529 -31.44438 -30.98172 -30.29706 -29.14220 -27.60172 -25.53034 -25.16100 -23.82820 -22.91186 -22.76556 -21.50737 -20.37953 -19.54459 -18.21245 -17.34996 -17.04387 -16.66356 -16.19639 -16.06565 -15.84575 -15.11846 -14.76673 -14.60347 -14.34960 -14.17174 -13.83551 -13.66488 -13.45953 -13.43370 -12.96058 -12.83856 -12.65280 -12.64190 -12.34412 -12.28488 -12.17603 -11.95292 -11.47274 -11.27234 -11.21335 -11.11142 -11.06502 -10.85982 -10.63203 -10.34281 -10.23543 -10.09969 -9.99550 -9.75968 -9.65947 -8.98202 -8.76757 -8.52199 -7.06818 -5.84449 -3.15230 0.52748 0.91531 2.65809 2.81446 2.96396 3.39306 3.44731 3.46509 3.61862 3.96337 4.31146 4.51827 4.53155 4.63927 4.66843 4.73983 4.87939 4.90676 4.98076 5.11140 5.20620 5.26739 5.32877 5.37902 5.41714 5.42612 5.49120 5.50589 5.55874 5.61794 5.71723 5.77102 5.82413 5.85298 5.91755 6.01613 6.07947 6.11412 6.23836 6.38242 6.51809 6.55212 6.63458 6.87163 6.99887 7.53361 7.57464 7.63115 8.12865 8.32641 9.44324 9.98073 10.32801 11.37633 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.002661 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.530563 B =10518.535214 C =11749.757148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 C -0.169 4.169 4 O -0.300 6.300 5 C 0.320 3.680 6 C -0.177 4.177 7 C -0.043 4.043 8 C 0.570 3.430 9 O -0.529 6.529 10 N -0.598 5.598 11 C 0.088 3.912 12 C -0.157 4.157 13 C 0.177 3.823 14 H 0.067 0.933 15 N -0.714 5.714 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.291 1.291 24 C 0.127 3.873 25 H 0.082 0.918 26 C -0.155 4.155 27 C -0.158 4.158 28 C 0.135 3.865 29 N -0.530 5.530 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.164 0.836 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.149 0.851 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 5.384 -23.005 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.207 6.207 5 C 0.141 3.859 6 C -0.198 4.198 7 C -0.054 4.054 8 C 0.358 3.642 9 O -0.406 6.406 10 N -0.331 5.331 11 C -0.034 4.034 12 C -0.198 4.198 13 C 0.065 3.935 14 H 0.084 0.916 15 N -0.355 5.355 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.024 3.976 25 H 0.100 0.900 26 C -0.213 4.213 27 C -0.179 4.179 28 C -0.021 4.021 29 N -0.255 5.255 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.181 0.819 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.167 0.833 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.836 5.404 -23.437 26.380 hybrid contribution 0.338 -0.110 1.371 1.416 sum -10.498 5.294 -22.066 25.003 Atomic orbital electron populations 1.21914 0.92815 1.03069 1.03058 1.22353 0.94475 0.92748 0.87888 1.22223 1.02157 0.95603 1.02662 1.86314 1.31377 1.64350 1.38689 1.19647 0.86299 0.90513 0.89412 1.22057 0.97212 1.00203 1.00326 1.20189 0.94057 0.96264 0.94860 1.17715 0.82423 0.82644 0.81468 1.90776 1.29390 1.36118 1.84355 1.48457 1.42751 1.35382 1.06464 1.22805 0.91727 0.90885 0.98016 1.23634 1.02723 1.01712 0.91745 1.21246 0.93764 0.92457 0.86024 0.91555 1.42344 1.05097 1.87334 1.00711 1.19188 0.91835 1.43023 0.83473 0.90954 1.24772 0.95351 1.02488 0.98005 1.69669 1.02042 1.56760 1.29214 0.86179 0.78002 0.77641 0.84258 1.21649 1.20667 1.21739 1.21978 1.00481 0.91632 0.83542 0.90031 1.22047 1.01033 0.95357 1.02834 1.22112 1.02341 1.01234 0.92252 1.22375 0.89510 0.91400 0.98771 1.67106 1.10649 1.23040 1.24655 0.91486 0.90507 0.91790 0.89291 0.91985 0.91127 0.91847 0.81857 0.90975 0.90474 0.90267 0.90428 0.77945 0.93342 0.92921 0.92151 0.90782 0.83340 0.81734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.56 37.16 0.36 -0.62 16 2 C 0.08 0.69 3.11 -26.73 -0.08 0.61 16 3 C -0.17 -1.29 9.53 37.16 0.35 -0.93 16 4 O -0.30 -3.29 9.76 -18.74 -0.18 -3.47 16 5 C 0.32 3.73 7.45 -17.16 -0.13 3.61 16 6 C -0.18 -2.10 8.18 -38.84 -0.32 -2.42 16 7 C -0.04 -0.56 5.81 -104.68 -0.61 -1.17 16 8 C 0.57 8.97 7.50 -12.19 -0.09 8.88 16 9 O -0.53 -9.81 15.85 5.35 0.08 -9.72 16 10 N -0.60 -9.16 3.07 -164.00 -0.50 -9.67 16 11 C 0.09 1.15 4.94 -2.53 -0.01 1.14 16 12 C -0.16 -2.50 6.77 -24.58 -0.17 -2.66 16 13 C 0.18 3.28 3.11 -66.10 -0.21 3.08 16 14 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 15 N -0.71 -16.98 5.25 -51.65 -0.27 -17.25 16 16 C -0.24 -6.44 9.98 -15.06 -0.15 -6.59 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 20 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.13 2.19 3.18 -66.95 -0.21 1.98 16 25 H 0.08 1.59 7.69 -51.93 -0.40 1.19 16 26 C -0.15 -2.51 9.10 37.16 0.34 -2.17 16 27 C -0.16 -1.77 9.67 -39.03 -0.38 -2.14 16 28 C 0.13 1.29 11.17 -17.61 -0.20 1.09 16 29 N -0.53 -5.82 8.61 -13.38 -0.12 -5.93 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.79 6.98 -51.93 -0.36 0.43 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.16 1.79 4.05 -52.49 -0.21 1.58 16 38 H 0.07 0.81 7.06 -51.93 -0.37 0.44 16 39 H 0.08 0.91 6.45 -51.94 -0.33 0.58 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.39 9.95 7.51 -40.82 -0.31 9.64 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.01 7.11 -51.93 -0.37 0.64 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.15 1.55 7.83 -52.49 -0.41 1.14 16 48 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -31.25 389.14 -8.39 -39.63 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.36 Total: 9.19 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.60 Total: 1.32 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.16 Total: -59.50 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.10 Total: -13.20 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.25 -8.39 -39.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987335362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.080 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds