Wall clock time and date at job start Tue Mar 31 2020 17:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.87583 * 2 1 4 4 C 1.54327 * 110.01113 * 121.10135 * 2 1 3 5 5 H 1.08999 * 110.71962 * 215.66018 * 4 2 1 6 6 N 1.46501 * 110.71932 * 338.93069 * 4 2 1 7 7 C 1.36941 * 120.00084 * 205.00312 * 6 4 2 8 8 H 1.07997 * 119.99754 * 359.97438 * 7 6 4 9 9 C 1.38808 * 119.99662 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00527 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99681 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46898 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47318 * 119.99461 * 11 9 7 14 14 H 1.48502 * 109.47227 * 239.99993 * 11 9 7 15 15 C 1.55154 * 102.94403 * 97.29408 * 4 2 1 16 16 C 1.54913 * 101.58067 * 35.49922 * 15 4 2 17 17 N 1.47022 * 109.87895 * 238.98473 * 2 1 3 18 18 C 1.34778 * 125.65004 * 59.40674 * 17 2 1 19 19 O 1.21582 * 119.99567 * 359.97438 * 18 17 2 20 20 C 1.47512 * 119.99853 * 179.97438 * 18 17 2 21 21 C 1.36827 * 126.94318 * 180.02562 * 20 18 17 22 22 C 1.41257 * 103.84667 * 179.97438 * 21 20 18 23 23 C 1.50700 * 126.70438 * 180.02562 * 22 21 20 24 24 C 1.54269 * 110.03186 * 32.16429 * 23 22 21 25 25 C 1.54883 * 104.19613 * 217.10399 * 24 23 22 26 26 C 1.54887 * 102.74718 * 37.94702 * 25 24 23 27 27 C 1.53874 * 110.03171 * 275.00248 * 23 22 21 28 28 N 1.30128 * 106.58977 * 359.97438 * 22 21 20 29 29 O 1.20886 * 111.98165 * 359.69850 * 28 22 21 30 30 H 1.08991 * 109.47360 * 179.29923 * 1 2 3 31 31 H 1.09006 * 109.46753 * 299.30009 * 1 2 3 32 32 H 1.09004 * 109.46911 * 59.29657 * 1 2 3 33 33 H 0.97001 * 120.00107 * 25.00112 * 6 4 2 34 34 H 0.97002 * 120.00276 * 180.02562 * 10 9 7 35 35 H 1.09001 * 111.00629 * 277.43051 * 15 4 2 36 36 H 1.08993 * 111.00541 * 153.57905 * 15 4 2 37 37 H 1.08998 * 110.36898 * 204.14917 * 16 15 4 38 38 H 1.09001 * 110.45585 * 81.87477 * 16 15 4 39 39 H 1.08004 * 128.07011 * 0.02562 * 21 20 18 40 40 H 1.08997 * 110.02047 * 153.60545 * 23 22 21 41 41 H 1.08995 * 110.48875 * 335.78764 * 24 23 22 42 42 H 1.09005 * 110.48524 * 98.42959 * 24 23 22 43 43 H 1.08995 * 110.75817 * 279.62709 * 25 24 23 44 44 H 1.09004 * 110.91340 * 156.33266 * 25 24 23 45 45 H 1.09007 * 110.48519 * 203.37403 * 26 25 24 46 46 H 1.08993 * 110.60196 * 80.79210 * 26 25 24 47 47 H 1.09004 * 110.02910 * 238.57027 * 27 23 22 48 48 H 1.08998 * 110.03486 * 359.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7491 1.2417 5 1 2.9684 -0.2809 1.6162 6 7 1.0341 -0.8048 2.2878 7 6 1.4022 -0.9408 3.5998 8 1 2.4474 -1.0073 3.8632 9 6 0.4318 -0.9942 4.5908 10 7 -0.8421 -0.9137 4.2697 11 14 0.9338 -1.1804 6.3805 12 1 2.4144 -1.2488 6.4747 13 1 0.4414 -0.0142 7.1567 14 1 0.3451 -2.4269 6.9327 15 6 2.3575 -2.1681 0.6903 16 6 2.8598 -1.8466 -0.7395 17 7 2.0300 -0.7124 -1.1849 18 6 1.7729 -0.3827 -2.4662 19 8 1.0719 0.5783 -2.7177 20 6 2.3420 -1.1879 -3.5634 21 6 2.1753 -0.9831 -4.9059 22 6 2.9224 -2.0232 -5.5020 23 6 3.0900 -2.2805 -6.9774 24 6 3.0657 -0.9469 -7.7525 25 6 2.3097 -1.2825 -9.0620 26 6 1.2105 -2.2619 -8.5807 27 6 1.9104 -3.1166 -7.5040 28 7 3.4384 -2.7152 -4.5282 29 8 3.1365 -2.2686 -3.4462 30 1 -0.3633 -1.0275 -0.0126 31 1 -0.3633 0.5030 0.8963 32 1 -0.3633 0.5247 -0.8836 33 1 0.0952 -0.7454 2.0511 34 1 -1.5202 -0.9506 4.9624 35 1 1.4521 -2.7742 0.6591 36 1 3.1344 -2.6591 1.2762 37 1 2.7128 -2.7048 -1.3952 38 1 3.9117 -1.5618 -0.7186 39 1 1.6061 -0.2067 -5.3955 40 1 4.0291 -2.8027 -7.1607 41 1 2.5286 -0.1862 -7.1861 42 1 4.0804 -0.6148 -7.9722 43 1 2.9732 -1.7679 -9.7776 44 1 1.8657 -0.3863 -9.4955 45 1 0.8712 -2.8894 -9.4049 46 1 0.3723 -1.7154 -8.1486 47 1 2.2771 -4.0442 -7.9436 48 1 1.2169 -3.3366 -6.6924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987550870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:41 Heat of formation + Delta-G solvation = 21.417103 kcal Electronic energy + Delta-G solvation = -28845.455186 eV Core-core repulsion = 24903.074741 eV Total energy + Delta-G solvation = -3942.380446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.12659 -41.37700 -39.33897 -39.03583 -36.03230 -34.98988 -33.82691 -32.87587 -32.13257 -30.62552 -29.68953 -29.63231 -26.82170 -26.05752 -24.94804 -24.51046 -23.30845 -21.94905 -21.43022 -20.83303 -20.02954 -19.46268 -18.92554 -18.73359 -17.53964 -17.13594 -17.00351 -16.54441 -16.32686 -16.10508 -15.81646 -15.41273 -14.99408 -14.84830 -14.60399 -14.31926 -14.17067 -13.91469 -13.67324 -13.29945 -13.10697 -12.98168 -12.93314 -12.88126 -12.83981 -12.57775 -12.37845 -12.09109 -12.02020 -12.00411 -11.93341 -11.65008 -11.59121 -11.55553 -11.45664 -11.34523 -11.06932 -10.92751 -10.85650 -9.85165 -9.00843 -7.92508 -5.21413 -0.34607 0.94576 1.34832 1.51051 1.51614 1.61136 1.80958 1.96411 2.58744 2.86764 3.15375 3.39292 3.55438 3.67412 3.69205 3.76656 3.85718 3.93294 3.95373 4.01781 4.16378 4.32359 4.35051 4.38764 4.50268 4.50916 4.52591 4.58366 4.63792 4.70980 4.77554 4.80743 4.84077 4.84365 4.95349 5.02165 5.07644 5.19961 5.20792 5.25595 5.26450 5.27821 5.34756 5.45924 5.48390 5.57296 6.23200 6.29277 6.67347 6.99488 7.36883 8.09385 8.33073 9.31132 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032586 B = 0.002207 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.069143 B =12682.834156 C =12995.428608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.134 3.866 3 H 0.079 0.921 4 C 0.167 3.833 5 H 0.077 0.923 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.083 0.917 9 C -0.076 4.076 10 N -0.970 5.970 11 Si 0.971 3.029 12 H -0.263 1.263 13 H -0.298 1.298 14 H -0.297 1.297 15 C -0.144 4.144 16 C 0.101 3.899 17 N -0.594 5.594 18 C 0.615 3.385 19 O -0.544 6.544 20 C -0.084 4.084 21 C -0.143 4.143 22 C 0.030 3.970 23 C -0.016 4.016 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.115 4.115 28 N -0.364 5.364 29 O 0.112 5.888 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.381 0.619 34 H 0.250 0.750 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.196 0.804 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 -2.661 -27.038 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.031 3.969 3 H 0.097 0.903 4 C 0.057 3.943 5 H 0.095 0.905 6 N -0.372 5.372 7 C -0.368 4.368 8 H 0.101 0.899 9 C -0.268 4.268 10 N -0.621 5.621 11 Si 0.801 3.199 12 H -0.187 1.187 13 H -0.225 1.225 14 H -0.225 1.225 15 C -0.184 4.184 16 C -0.021 4.021 17 N -0.325 5.325 18 C 0.401 3.599 19 O -0.422 6.422 20 C -0.149 4.149 21 C -0.165 4.165 22 C -0.128 4.128 23 C -0.035 4.035 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.162 4.162 27 C -0.154 4.154 28 N -0.066 5.066 29 O 0.042 5.958 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.217 0.783 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.213 0.787 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.279 -3.221 -26.987 29.057 hybrid contribution -1.034 0.455 1.216 1.660 sum 9.245 -2.766 -25.770 27.518 Atomic orbital electron populations 1.21859 0.95181 1.01620 1.01903 1.21786 0.94736 0.96143 0.84275 0.90258 1.21396 0.92387 0.93867 0.86646 0.90505 1.42821 1.05036 1.87183 1.02134 1.19698 0.92924 1.39967 0.84166 0.89898 1.25537 0.95360 1.03914 1.01999 1.69819 0.99873 1.59422 1.32939 0.85100 0.77970 0.76337 0.80487 1.18686 1.22538 1.22496 1.23391 1.01644 0.99134 0.94281 1.22645 0.95370 0.88164 0.95929 1.48489 1.49092 1.30822 1.04126 1.16308 0.80244 0.83063 0.80271 1.90834 1.39518 1.28802 1.83094 1.23979 1.00994 0.93449 0.96521 1.23016 1.01565 1.01235 0.90711 1.23991 0.97261 0.93067 0.98503 1.20411 1.00913 0.98913 0.83309 1.22533 1.02022 0.94878 0.96301 1.22487 0.97142 0.99640 0.96380 1.22388 0.98074 0.97826 0.97912 1.22198 0.95768 0.98907 0.98482 1.73715 1.20111 1.21173 0.91650 1.85062 1.50032 1.34473 1.26244 0.93361 0.91831 0.91989 0.78290 0.94139 0.92369 0.88885 0.89228 0.88494 0.78685 0.88504 0.90986 0.90153 0.90272 0.90289 0.90298 0.91758 0.90068 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 7.93 71.98 0.57 -4.90 16 2 C 0.13 4.55 3.47 45.34 0.16 4.70 16 3 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 4 C 0.17 6.07 3.49 46.18 0.16 6.23 16 5 H 0.08 2.69 8.09 -2.39 -0.02 2.67 16 6 N -0.73 -34.54 4.94 -317.33 -1.57 -36.10 16 7 C -0.24 -12.33 9.96 84.03 0.84 -11.50 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 C -0.08 -4.21 5.50 84.86 0.47 -3.75 16 10 N -0.97 -58.05 13.06 21.65 0.28 -57.76 16 11 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 12 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 13 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 15 C -0.14 -4.41 6.77 31.99 0.22 -4.19 16 16 C 0.10 2.53 6.20 86.86 0.54 3.07 16 17 N -0.59 -17.57 3.08 -791.79 -2.44 -20.01 16 18 C 0.61 18.56 7.63 86.69 0.66 19.22 16 19 O -0.54 -19.14 15.80 -3.97 -0.06 -19.20 16 20 C -0.08 -2.13 7.06 24.39 0.17 -1.96 16 21 C -0.14 -3.07 9.88 22.68 0.22 -2.84 16 22 C 0.03 0.60 6.02 43.55 0.26 0.86 16 23 C -0.02 -0.23 3.44 -10.81 -0.04 -0.26 16 24 C -0.12 -1.28 6.31 31.67 0.20 -1.08 16 25 C -0.12 -0.97 6.91 31.88 0.22 -0.75 16 26 C -0.12 -1.23 6.83 31.67 0.22 -1.01 16 27 C -0.12 -1.47 6.45 31.32 0.20 -1.27 16 28 N -0.36 -8.76 12.04 -48.87 -0.59 -9.35 16 29 O 0.11 2.77 8.58 65.89 0.57 3.34 16 30 H 0.05 1.84 8.02 -2.39 -0.02 1.82 16 31 H 0.06 2.62 6.81 -2.38 -0.02 2.60 16 32 H 0.06 2.26 6.74 -2.39 -0.02 2.24 16 33 H 0.38 19.51 5.07 -92.71 -0.47 19.04 16 34 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.09 2.09 6.29 -2.39 -0.02 2.07 16 38 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.20 3.50 7.25 -2.91 -0.02 3.48 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 0.83 6.22 -2.39 -0.01 0.82 16 42 H 0.08 0.74 8.14 -2.38 -0.02 0.73 16 43 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 48 H 0.05 0.82 7.67 -2.39 -0.02 0.80 16 Total: -1.00 -64.53 380.07 3.79 -60.74 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.50 Total: 30.84 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.07 Total: 0.58 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -4.31 Total: -123.23 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.50 Total: -15.86 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.53 3.79 -60.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987550870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.157 kcal (2) G-P(sol) polarization free energy of solvation -64.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds