Wall clock time and date at job start Tue Mar 31 2020 17:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87209 * 2 1 4 4 C 1.54321 * 109.88370 * 121.17274 * 2 1 3 5 5 H 1.09007 * 110.71794 * 23.25039 * 4 2 1 6 6 N 1.46496 * 110.72315 * 259.97886 * 4 2 1 7 7 C 1.36931 * 120.00138 * 155.00074 * 6 4 2 8 8 H 1.07998 * 120.00260 * 359.97438 * 7 6 4 9 9 C 1.38818 * 120.00045 * 180.02562 * 7 6 4 10 10 N 1.31613 * 120.00243 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99843 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46962 * 90.00242 * 11 9 7 13 13 H 1.48495 * 109.47003 * 210.00322 * 11 9 7 14 14 H 1.48504 * 109.47332 * 330.00456 * 11 9 7 15 15 C 1.55160 * 102.94080 * 141.61069 * 4 2 1 16 16 C 1.54906 * 101.58189 * 324.50123 * 15 4 2 17 17 N 1.47022 * 109.88102 * 238.98415 * 2 1 3 18 18 C 1.34770 * 125.65017 * 61.68195 * 17 2 1 19 19 O 1.21593 * 120.00085 * 359.97438 * 18 17 2 20 20 C 1.47514 * 120.00330 * 180.02562 * 18 17 2 21 21 C 1.36824 * 126.94806 * 180.02562 * 20 18 17 22 22 C 1.41257 * 103.84729 * 179.97438 * 21 20 18 23 23 C 1.50700 * 126.70508 * 179.97438 * 22 21 20 24 24 C 1.54261 * 110.03122 * 32.16337 * 23 22 21 25 25 C 1.54895 * 104.19772 * 217.10423 * 24 23 22 26 26 C 1.54892 * 102.74638 * 37.94445 * 25 24 23 27 27 C 1.53872 * 110.03320 * 274.99856 * 23 22 21 28 28 N 1.30122 * 106.59127 * 359.97438 * 22 21 20 29 29 O 1.20890 * 111.98710 * 359.69686 * 28 22 21 30 30 H 1.09001 * 109.47002 * 179.56040 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.56478 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.56306 * 1 2 3 33 33 H 0.97000 * 119.99470 * 334.99416 * 6 4 2 34 34 H 0.96995 * 120.00492 * 179.97438 * 10 9 7 35 35 H 1.09004 * 111.00105 * 206.42306 * 15 4 2 36 36 H 1.08996 * 110.99790 * 82.57419 * 15 4 2 37 37 H 1.08998 * 110.36713 * 278.16811 * 16 15 4 38 38 H 1.09001 * 110.36405 * 155.85087 * 16 15 4 39 39 H 1.08002 * 128.07499 * 359.96381 * 21 20 18 40 40 H 1.09000 * 110.01933 * 153.60508 * 23 22 21 41 41 H 1.09003 * 110.48914 * 335.78591 * 24 23 22 42 42 H 1.09004 * 110.48861 * 98.43076 * 24 23 22 43 43 H 1.08996 * 110.75237 * 279.62942 * 25 24 23 44 44 H 1.08996 * 110.91456 * 156.33416 * 25 24 23 45 45 H 1.08994 * 110.48514 * 203.37760 * 26 25 24 46 46 H 1.09004 * 110.59559 * 80.78971 * 26 25 24 47 47 H 1.08996 * 110.03287 * 238.56947 * 27 23 22 48 48 H 1.09005 * 110.03349 * 359.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7512 1.2417 5 1 1.3052 -1.4482 1.6162 6 7 2.4554 0.1929 2.2878 7 6 2.4582 -0.1995 3.5997 8 1 2.1647 -1.2048 3.8633 9 6 2.8372 0.6953 4.5910 10 7 2.8404 0.3181 5.8519 11 14 3.3442 2.4345 4.1352 12 1 2.1494 3.3164 4.1427 13 1 4.3354 2.9355 5.1209 14 1 3.9507 2.4342 2.7797 15 6 3.2877 -1.5151 0.6902 16 6 2.8146 -1.8783 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8086 -0.3578 -2.4661 19 8 1.1436 0.6285 -2.7178 20 6 2.3721 -1.1669 -3.5634 21 6 2.2381 -0.9392 -4.9058 22 6 2.9621 -1.9956 -5.5019 23 6 3.1487 -2.2397 -6.9772 24 6 3.1819 -0.8964 -7.7350 25 6 2.4398 -1.1907 -9.0624 26 6 1.3009 -2.1398 -8.6141 27 6 1.9528 -3.0302 -7.5362 28 7 3.4364 -2.7168 -4.5282 29 8 3.1285 -2.2747 -3.4459 30 1 -0.3633 -1.0277 -0.0079 31 1 -0.3633 0.5070 0.8938 32 1 -0.3633 0.5206 -0.8860 33 1 2.7188 1.0960 2.0511 34 1 3.1056 0.9431 6.5445 35 1 3.4853 -2.4127 1.2763 36 1 4.1654 -0.8696 0.6592 37 1 2.1888 -2.7704 -0.7167 38 1 3.6718 -2.0318 -1.3950 39 1 1.7033 -0.1388 -5.3955 40 1 4.0737 -2.7898 -7.1504 41 1 2.6591 -0.1257 -7.1685 42 1 4.2106 -0.5947 -7.9319 43 1 3.1006 -1.6884 -9.7721 44 1 2.0332 -0.2752 -9.4921 45 1 0.9569 -2.7455 -9.4525 46 1 0.4729 -1.5717 -8.1901 47 1 2.2974 -3.9636 -7.9812 48 1 1.2375 -3.2378 -6.7402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987550872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:47 Heat of formation + Delta-G solvation = 35.463214 kcal Electronic energy + Delta-G solvation = -28814.513985 eV Core-core repulsion = 24872.742625 eV Total energy + Delta-G solvation = -3941.771361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.22736 -40.14776 -38.79511 -37.72917 -34.50378 -34.10717 -32.55147 -31.52923 -31.02696 -29.66989 -29.17620 -29.08112 -25.44510 -24.70691 -23.66151 -22.73963 -22.14959 -21.03805 -20.92593 -20.25845 -19.24554 -17.98024 -17.69835 -17.61994 -16.59891 -16.43275 -15.90014 -15.56736 -15.32123 -14.69798 -14.34195 -14.04804 -13.99710 -13.71418 -13.56408 -13.43910 -13.01501 -12.78312 -12.38512 -12.37587 -12.14418 -12.07346 -11.94338 -11.70965 -11.56859 -11.51924 -11.37927 -11.30231 -11.10759 -10.96115 -10.92522 -10.70021 -10.45145 -10.29626 -10.26165 -10.08014 -9.91147 -9.66601 -9.01809 -8.68685 -7.39070 -5.85082 -3.22879 0.63416 1.79152 2.40294 2.89294 3.00070 3.33665 3.36860 3.42226 3.61374 3.97016 4.17268 4.29978 4.48857 4.52240 4.63097 4.84602 4.85410 4.92973 4.98716 5.02239 5.06905 5.10846 5.14536 5.21189 5.28440 5.35529 5.42713 5.47755 5.50214 5.52218 5.55499 5.61644 5.70102 5.72993 5.75106 5.84695 5.86467 5.88758 5.92291 6.14253 6.25579 6.42382 6.45341 6.48906 6.73243 7.35336 7.74523 7.88188 7.97223 8.33000 9.09294 9.81802 9.99580 11.32444 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028095 B = 0.002323 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.370768 B =12051.713667 C =12260.345846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 H 0.080 0.920 4 C 0.182 3.818 5 H 0.080 0.920 6 N -0.737 5.737 7 C -0.249 4.249 8 H 0.093 0.907 9 C 0.009 3.991 10 N -0.929 5.929 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.154 4.154 16 C 0.092 3.908 17 N -0.594 5.594 18 C 0.613 3.387 19 O -0.517 6.517 20 C -0.070 4.070 21 C -0.154 4.154 22 C 0.021 3.979 23 C -0.014 4.014 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.115 4.115 28 N -0.349 5.349 29 O 0.119 5.881 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.363 0.637 34 H 0.261 0.739 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.181 0.819 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 -5.736 -28.859 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.098 0.902 4 C 0.071 3.929 5 H 0.098 0.902 6 N -0.379 5.379 7 C -0.379 4.379 8 H 0.111 0.889 9 C -0.187 4.187 10 N -0.576 5.576 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.195 4.195 16 C -0.031 4.031 17 N -0.326 5.326 18 C 0.398 3.602 19 O -0.393 6.393 20 C -0.136 4.136 21 C -0.176 4.176 22 C -0.136 4.136 23 C -0.034 4.034 24 C -0.158 4.158 25 C -0.162 4.162 26 C -0.163 4.163 27 C -0.154 4.154 28 N -0.049 5.049 29 O 0.047 5.953 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.197 0.803 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.198 0.802 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.867 -6.408 -28.721 29.440 hybrid contribution 0.130 1.806 -0.358 1.846 sum -0.737 -4.602 -29.080 29.451 Atomic orbital electron populations 1.22081 0.94197 1.02225 1.03019 1.22104 0.95016 0.96821 0.84044 0.90236 1.21234 0.94051 0.91317 0.86339 0.90228 1.42691 1.80696 1.11157 1.03347 1.19021 1.39095 0.99092 0.80662 0.88916 1.24668 1.01172 0.97797 0.95075 1.69687 1.53722 1.35262 0.98903 0.86596 0.78496 0.86196 0.77495 1.20904 1.21640 1.20272 1.23561 1.00966 1.02239 0.92775 1.22621 0.95130 0.87864 0.97437 1.48466 1.50976 1.28710 1.04444 1.16152 0.80642 0.83345 0.80052 1.90857 1.39961 1.25894 1.82636 1.24270 1.00628 0.92037 0.96636 1.22737 1.02348 1.01218 0.91334 1.23550 0.99033 0.93555 0.97500 1.20222 1.00227 0.97926 0.85003 1.22511 1.01418 0.95864 0.95997 1.22494 0.97246 0.99639 0.96784 1.22381 0.98057 0.97721 0.98109 1.22192 0.96307 0.98453 0.98417 1.73726 1.19050 1.20848 0.91299 1.85092 1.50965 1.33299 1.25942 0.92556 0.90673 0.91844 0.80331 0.92904 0.89666 0.90602 0.90767 0.90291 0.80157 0.88991 0.90631 0.90932 0.91241 0.91085 0.91353 0.91299 0.90982 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.11 37.16 0.34 -2.01 16 2 C 0.12 1.97 3.21 -66.95 -0.21 1.76 16 3 H 0.08 1.37 7.72 -51.93 -0.40 0.97 16 4 C 0.18 3.20 3.14 -66.10 -0.21 2.99 16 5 H 0.08 1.41 7.80 -51.93 -0.41 1.01 16 6 N -0.74 -16.27 5.03 -51.65 -0.26 -16.53 16 7 C -0.25 -6.61 10.44 -15.06 -0.16 -6.77 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 10 N -0.93 -28.21 13.97 55.49 0.78 -27.44 16 11 Si 0.88 21.45 27.74 -169.99 -4.71 16.73 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 15 C -0.15 -2.35 6.77 -24.58 -0.17 -2.51 16 16 C 0.09 1.18 6.21 -2.53 -0.02 1.17 16 17 N -0.59 -8.61 3.06 -164.25 -0.50 -9.11 16 18 C 0.61 9.06 7.64 -12.48 -0.10 8.96 16 19 O -0.52 -8.79 15.95 5.28 0.08 -8.71 16 20 C -0.07 -0.89 7.06 -36.31 -0.26 -1.15 16 21 C -0.15 -1.69 9.88 -38.95 -0.38 -2.07 16 22 C 0.02 0.23 6.02 -82.17 -0.49 -0.27 16 23 C -0.01 -0.11 3.44 -90.66 -0.31 -0.42 16 24 C -0.12 -0.76 6.31 -25.07 -0.16 -0.92 16 25 C -0.12 -0.64 6.91 -24.73 -0.17 -0.81 16 26 C -0.13 -0.70 6.83 -25.07 -0.17 -0.87 16 27 C -0.12 -0.78 6.45 -25.61 -0.17 -0.95 16 28 N -0.35 -4.32 12.04 33.52 0.40 -3.92 16 29 O 0.12 1.50 8.57 15.53 0.13 1.63 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.97 6.88 -51.93 -0.36 0.61 16 33 H 0.36 8.03 5.43 -40.82 -0.22 7.81 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.94 6.27 -51.93 -0.33 0.61 16 39 H 0.18 1.68 7.25 -52.49 -0.38 1.30 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.50 6.22 -51.93 -0.32 0.18 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -30.80 381.31 -8.54 -39.34 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.48 Total: 5.95 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.73 Total: -3.72 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.42 Total: -56.99 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.22 Total: -7.08 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.80 -8.54 -39.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987550872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.806 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds