Wall clock time and date at job start Tue Mar 31 2020 17:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87209 * 2 1 4 4 C 1.54321 * 109.88370 * 121.17274 * 2 1 3 5 5 H 1.09007 * 110.71794 * 23.25039 * 4 2 1 6 6 N 1.46496 * 110.72315 * 259.97886 * 4 2 1 7 7 C 1.36931 * 120.00138 * 155.00074 * 6 4 2 8 8 H 1.07998 * 120.00260 * 359.97438 * 7 6 4 9 9 C 1.38818 * 120.00045 * 180.02562 * 7 6 4 10 10 N 1.31613 * 120.00243 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99843 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46962 * 90.00242 * 11 9 7 13 13 H 1.48495 * 109.47003 * 210.00322 * 11 9 7 14 14 H 1.48504 * 109.47332 * 330.00456 * 11 9 7 15 15 C 1.55160 * 102.94080 * 141.61069 * 4 2 1 16 16 C 1.54906 * 101.58189 * 324.50123 * 15 4 2 17 17 N 1.47022 * 109.88102 * 238.98415 * 2 1 3 18 18 C 1.34770 * 125.65017 * 61.68195 * 17 2 1 19 19 O 1.21593 * 120.00085 * 359.97438 * 18 17 2 20 20 C 1.47514 * 120.00330 * 180.02562 * 18 17 2 21 21 C 1.36824 * 126.94806 * 180.02562 * 20 18 17 22 22 C 1.41257 * 103.84729 * 179.97438 * 21 20 18 23 23 C 1.50700 * 126.70508 * 179.97438 * 22 21 20 24 24 C 1.54261 * 110.03122 * 32.16337 * 23 22 21 25 25 C 1.54895 * 104.19772 * 217.10423 * 24 23 22 26 26 C 1.54892 * 102.74638 * 37.94445 * 25 24 23 27 27 C 1.53872 * 110.03320 * 274.99856 * 23 22 21 28 28 N 1.30122 * 106.59127 * 359.97438 * 22 21 20 29 29 O 1.20890 * 111.98710 * 359.69686 * 28 22 21 30 30 H 1.09001 * 109.47002 * 179.56040 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.56478 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.56306 * 1 2 3 33 33 H 0.97000 * 119.99470 * 334.99416 * 6 4 2 34 34 H 0.96995 * 120.00492 * 179.97438 * 10 9 7 35 35 H 1.09004 * 111.00105 * 206.42306 * 15 4 2 36 36 H 1.08996 * 110.99790 * 82.57419 * 15 4 2 37 37 H 1.08998 * 110.36713 * 278.16811 * 16 15 4 38 38 H 1.09001 * 110.36405 * 155.85087 * 16 15 4 39 39 H 1.08002 * 128.07499 * 359.96381 * 21 20 18 40 40 H 1.09000 * 110.01933 * 153.60508 * 23 22 21 41 41 H 1.09003 * 110.48914 * 335.78591 * 24 23 22 42 42 H 1.09004 * 110.48861 * 98.43076 * 24 23 22 43 43 H 1.08996 * 110.75237 * 279.62942 * 25 24 23 44 44 H 1.08996 * 110.91456 * 156.33416 * 25 24 23 45 45 H 1.08994 * 110.48514 * 203.37760 * 26 25 24 46 46 H 1.09004 * 110.59559 * 80.78971 * 26 25 24 47 47 H 1.08996 * 110.03287 * 238.56947 * 27 23 22 48 48 H 1.09005 * 110.03349 * 359.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7512 1.2417 5 1 1.3052 -1.4482 1.6162 6 7 2.4554 0.1929 2.2878 7 6 2.4582 -0.1995 3.5997 8 1 2.1647 -1.2048 3.8633 9 6 2.8372 0.6953 4.5910 10 7 2.8404 0.3181 5.8519 11 14 3.3442 2.4345 4.1352 12 1 2.1494 3.3164 4.1427 13 1 4.3354 2.9355 5.1209 14 1 3.9507 2.4342 2.7797 15 6 3.2877 -1.5151 0.6902 16 6 2.8146 -1.8783 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8086 -0.3578 -2.4661 19 8 1.1436 0.6285 -2.7178 20 6 2.3721 -1.1669 -3.5634 21 6 2.2381 -0.9392 -4.9058 22 6 2.9621 -1.9956 -5.5019 23 6 3.1487 -2.2397 -6.9772 24 6 3.1819 -0.8964 -7.7350 25 6 2.4398 -1.1907 -9.0624 26 6 1.3009 -2.1398 -8.6141 27 6 1.9528 -3.0302 -7.5362 28 7 3.4364 -2.7168 -4.5282 29 8 3.1285 -2.2747 -3.4459 30 1 -0.3633 -1.0277 -0.0079 31 1 -0.3633 0.5070 0.8938 32 1 -0.3633 0.5206 -0.8860 33 1 2.7188 1.0960 2.0511 34 1 3.1056 0.9431 6.5445 35 1 3.4853 -2.4127 1.2763 36 1 4.1654 -0.8696 0.6592 37 1 2.1888 -2.7704 -0.7167 38 1 3.6718 -2.0318 -1.3950 39 1 1.7033 -0.1388 -5.3955 40 1 4.0737 -2.7898 -7.1504 41 1 2.6591 -0.1257 -7.1685 42 1 4.2106 -0.5947 -7.9319 43 1 3.1006 -1.6884 -9.7721 44 1 2.0332 -0.2752 -9.4921 45 1 0.9569 -2.7455 -9.4525 46 1 0.4729 -1.5717 -8.1901 47 1 2.2974 -3.9636 -7.9812 48 1 1.2375 -3.2378 -6.7402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987550872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:46 Heat of formation + Delta-G solvation = 17.753096 kcal Electronic energy + Delta-G solvation = -28815.281954 eV Core-core repulsion = 24872.742625 eV Total energy + Delta-G solvation = -3942.539329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.13577 -41.37307 -39.34417 -39.02967 -36.12672 -35.00131 -33.87892 -33.11007 -32.22648 -31.17790 -29.69616 -29.63983 -26.96440 -25.81295 -24.57677 -24.39204 -23.19717 -22.00459 -21.54522 -21.43214 -20.19064 -19.56497 -18.92582 -18.65868 -17.79817 -17.35903 -16.77616 -16.46752 -16.34210 -16.10345 -15.85337 -15.37974 -14.91571 -14.80032 -14.64063 -14.43814 -14.22496 -14.09220 -13.82345 -13.50761 -13.37024 -13.06292 -12.98660 -12.85608 -12.70106 -12.59883 -12.39681 -12.16255 -12.08537 -12.02195 -11.93977 -11.81617 -11.62722 -11.57436 -11.46057 -11.42173 -11.07869 -10.96004 -10.86921 -9.87973 -9.33190 -8.00924 -5.35402 -0.35616 0.93918 1.32522 1.40258 1.41720 1.48318 1.78798 1.94467 2.48930 2.86117 3.13199 3.29544 3.46636 3.52917 3.66451 3.68641 3.78115 3.90888 3.94886 4.00814 4.10771 4.27235 4.30967 4.34255 4.41780 4.49609 4.51709 4.57903 4.62931 4.70993 4.72523 4.80074 4.83219 4.86160 4.94936 4.99002 5.07226 5.17505 5.20139 5.23414 5.25881 5.27243 5.34322 5.36551 5.47879 5.78579 6.19416 6.22470 6.64916 6.98818 7.06606 7.80935 7.98772 9.19732 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028095 B = 0.002323 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.370768 B =12051.713667 C =12260.345846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.130 3.870 3 H 0.067 0.933 4 C 0.175 3.825 5 H 0.079 0.921 6 N -0.742 5.742 7 C -0.224 4.224 8 H 0.067 0.933 9 C -0.059 4.059 10 N -0.979 5.979 11 Si 0.946 3.054 12 H -0.280 1.280 13 H -0.298 1.298 14 H -0.255 1.255 15 C -0.147 4.147 16 C 0.101 3.899 17 N -0.594 5.594 18 C 0.616 3.384 19 O -0.543 6.543 20 C -0.084 4.084 21 C -0.142 4.142 22 C 0.029 3.971 23 C -0.017 4.017 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.114 4.114 28 N -0.364 5.364 29 O 0.113 5.887 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.365 0.635 34 H 0.257 0.743 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.196 0.804 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 -5.776 -32.143 32.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.026 3.974 3 H 0.085 0.915 4 C 0.065 3.935 5 H 0.097 0.903 6 N -0.384 5.384 7 C -0.355 4.355 8 H 0.085 0.915 9 C -0.251 4.251 10 N -0.630 5.630 11 Si 0.774 3.226 12 H -0.207 1.207 13 H -0.225 1.225 14 H -0.180 1.180 15 C -0.188 4.188 16 C -0.021 4.021 17 N -0.326 5.326 18 C 0.403 3.597 19 O -0.421 6.421 20 C -0.150 4.150 21 C -0.164 4.164 22 C -0.129 4.129 23 C -0.036 4.036 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.161 4.161 27 C -0.152 4.152 28 N -0.066 5.066 29 O 0.042 5.958 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.198 0.802 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.214 0.786 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.649 -6.475 -32.067 32.721 hybrid contribution 0.032 1.694 0.555 1.783 sum -0.617 -4.781 -31.512 31.878 Atomic orbital electron populations 1.22007 0.93400 1.02851 1.02530 1.21851 0.95545 0.96013 0.83959 0.91451 1.21405 0.95164 0.90913 0.85974 0.90334 1.42662 1.81021 1.12046 1.02658 1.18982 1.36297 0.97694 0.82516 0.91487 1.25398 1.02673 1.01999 0.95015 1.69851 1.56332 1.36665 1.00118 0.85545 0.77929 0.81214 0.77882 1.20665 1.22524 1.17974 1.23398 0.99267 1.01819 0.94296 1.22647 0.95798 0.87807 0.95820 1.48446 1.51069 1.28957 1.04137 1.16277 0.80145 0.83089 0.80213 1.90841 1.41167 1.27067 1.83065 1.23976 1.01872 0.92657 0.96514 1.23013 1.01427 1.01266 0.90726 1.23984 0.97769 0.92642 0.98467 1.20406 1.00794 0.99052 0.83352 1.22536 1.01990 0.94866 0.96405 1.22490 0.97001 0.99959 0.96246 1.22386 0.98042 0.97695 0.98004 1.22192 0.95649 0.99033 0.98375 1.73720 1.19800 1.21457 0.91664 1.85068 1.51260 1.33269 1.26202 0.91395 0.91292 0.92125 0.80183 0.93395 0.89168 0.91487 0.88786 0.88899 0.78648 0.88667 0.90951 0.90371 0.90376 0.90309 0.90284 0.91615 0.90115 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.11 71.98 0.66 -3.67 16 2 C 0.13 4.01 3.21 45.34 0.15 4.16 16 3 H 0.07 2.27 7.72 -2.39 -0.02 2.25 16 4 C 0.17 5.99 3.14 46.18 0.14 6.13 16 5 H 0.08 2.73 7.80 -2.38 -0.02 2.71 16 6 N -0.74 -32.28 5.03 -317.33 -1.60 -33.88 16 7 C -0.22 -11.99 10.44 84.04 0.88 -11.11 16 8 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 9 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 10 N -0.98 -61.04 13.97 21.65 0.30 -60.73 16 11 Si 0.95 44.56 27.74 68.60 1.90 46.47 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 14 H -0.25 -10.93 6.52 99.48 0.65 -10.28 16 15 C -0.15 -4.27 6.77 31.99 0.22 -4.05 16 16 C 0.10 2.39 6.21 86.85 0.54 2.93 16 17 N -0.59 -16.30 3.06 -791.81 -2.43 -18.73 16 18 C 0.62 17.34 7.64 86.69 0.66 18.00 16 19 O -0.54 -17.87 15.95 -4.01 -0.06 -17.93 16 20 C -0.08 -2.02 7.06 24.39 0.17 -1.85 16 21 C -0.14 -2.86 9.88 22.68 0.22 -2.63 16 22 C 0.03 0.56 6.02 43.55 0.26 0.82 16 23 C -0.02 -0.22 3.44 -10.82 -0.04 -0.26 16 24 C -0.12 -1.23 6.31 31.67 0.20 -1.03 16 25 C -0.12 -0.90 6.91 31.89 0.22 -0.68 16 26 C -0.12 -1.08 6.83 31.67 0.22 -0.86 16 27 C -0.11 -1.32 6.45 31.32 0.20 -1.11 16 28 N -0.36 -8.41 12.04 -48.86 -0.59 -9.00 16 29 O 0.11 2.64 8.57 65.76 0.56 3.21 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 1.79 6.88 -2.39 -0.02 1.78 16 33 H 0.36 15.68 5.43 -92.71 -0.50 15.18 16 34 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 2.00 6.27 -2.39 -0.01 1.99 16 39 H 0.20 3.23 7.25 -2.91 -0.02 3.21 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 0.79 6.22 -2.39 -0.01 0.78 16 42 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.08 0.53 8.14 -2.39 -0.02 0.52 16 46 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.05 0.77 7.67 -2.38 -0.02 0.75 16 Total: -1.00 -66.52 381.31 3.67 -62.85 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.41 Total: 25.88 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.17 Total: 1.87 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -4.31 Total: -122.34 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.50 Total: -14.73 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.47 kcal Total: -66.52 3.67 -62.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987550872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.599 kcal (2) G-P(sol) polarization free energy of solvation -66.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds